Wall clock time and date at job start Wed Apr 1 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46979 * 2 1 4 4 N 1.28470 * 124.88601 * 270.18947 * 3 2 1 5 5 C 1.31813 * 110.07559 * 180.29222 * 4 3 2 6 6 C 1.47706 * 126.51918 * 179.71949 * 5 4 3 7 7 O 1.21576 * 119.99937 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00289 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00373 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.45709 * 35.02651 * 9 8 6 11 11 C 1.53038 * 109.46266 * 275.06906 * 9 8 6 12 12 C 1.53188 * 109.31431 * 178.61359 * 11 9 8 13 13 N 1.46926 * 108.77518 * 54.63280 * 12 11 9 14 14 C 1.36938 * 120.62768 * 126.41280 * 13 12 11 15 15 H 1.08002 * 119.99788 * 207.66172 * 14 13 12 16 16 C 1.38813 * 119.99942 * 27.66726 * 14 13 12 17 17 N 1.31620 * 120.00144 * 17.36277 * 16 14 13 18 18 Si 1.86809 * 119.99683 * 197.36367 * 16 14 13 19 19 H 1.48498 * 109.46937 * 89.99967 * 18 16 14 20 20 H 1.48495 * 109.46603 * 209.99686 * 18 16 14 21 21 H 1.48493 * 109.47260 * 329.99814 * 18 16 14 22 22 C 1.46926 * 118.73961 * 306.39320 * 13 12 11 23 23 C 1.53038 * 109.46070 * 154.99744 * 9 8 6 24 24 H 1.09000 * 109.49877 * 61.43986 * 23 9 8 25 25 C 1.52999 * 109.50088 * 301.37072 * 23 9 8 26 26 C 1.41498 * 106.96017 * 359.72109 * 5 4 3 27 27 C 1.35038 * 124.88832 * 89.99926 * 3 2 1 28 28 C 1.50701 * 126.38232 * 359.97438 * 27 3 2 29 29 C 1.52998 * 117.49804 * 214.71172 * 28 27 3 30 30 C 1.52999 * 60.03076 * 252.52152 * 29 28 27 31 31 H 1.08999 * 109.47183 * 60.00198 * 1 2 3 32 32 H 1.09006 * 109.47076 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47305 * 300.00110 * 1 2 3 34 34 H 1.09001 * 109.46808 * 239.99845 * 2 1 3 35 35 H 1.08999 * 109.47183 * 119.99802 * 2 1 3 36 36 H 0.97006 * 119.99910 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.49824 * 298.56689 * 11 9 8 38 38 H 1.09004 * 109.49608 * 58.65888 * 11 9 8 39 39 H 1.09000 * 109.58275 * 294.84667 * 12 11 9 40 40 H 1.08996 * 109.58744 * 174.42221 * 12 11 9 41 41 H 0.97000 * 119.99910 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.58252 * 293.82036 * 22 13 12 43 43 H 1.09000 * 109.70336 * 173.46546 * 22 13 12 44 44 H 1.09000 * 109.46865 * 59.99949 * 25 23 9 45 45 H 1.08999 * 109.47609 * 179.97438 * 25 23 9 46 46 H 1.08998 * 109.47006 * 300.00528 * 25 23 9 47 47 H 1.07999 * 127.24902 * 179.97438 * 26 5 4 48 48 H 1.09002 * 115.56176 * 0.40194 * 28 27 3 49 49 H 1.09005 * 117.49514 * 145.02211 * 29 28 27 50 50 H 1.08996 * 117.49652 * 0.02571 * 29 28 27 51 51 H 1.09000 * 117.49744 * 107.48309 * 30 29 28 52 52 H 1.09006 * 117.49750 * 252.47458 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2599 2.0751 -1.0538 5 6 2.6917 3.2741 -0.7169 6 6 3.0807 4.3597 -1.6399 7 8 3.4650 5.4250 -1.1977 8 7 3.0095 4.1694 -2.9722 9 6 3.3948 5.2463 -3.8876 10 1 4.2245 5.8082 -3.4586 11 6 2.2035 6.1823 -4.1040 12 6 2.6201 7.3260 -5.0340 13 7 3.1701 6.7537 -6.2704 14 6 2.6771 7.1277 -7.4920 15 1 2.7283 6.4447 -8.3271 16 6 2.1115 8.3846 -7.6569 17 7 2.3442 9.3321 -6.7735 18 14 1.0199 8.7312 -9.1328 19 1 -0.3901 8.4148 -8.7907 20 1 1.1296 10.1649 -9.5036 21 1 1.4525 7.8894 -10.2770 22 6 4.2595 5.7728 -6.1712 23 6 3.8246 4.6465 -5.2284 24 1 2.9876 4.1055 -5.6699 25 6 4.9940 3.6853 -5.0065 26 6 2.7117 3.3234 0.6971 27 6 2.2757 2.1094 1.1077 28 6 2.1139 1.6534 2.5349 29 6 1.6620 2.6935 3.5619 30 6 3.1078 2.1932 3.5662 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.7025 3.3196 -3.3251 37 1 1.3817 5.6267 -4.5560 38 1 1.8832 6.5910 -3.1456 39 1 3.3789 7.9367 -4.5449 40 1 1.7509 7.9397 -5.2706 41 1 1.9486 10.2102 -6.8885 42 1 5.1520 6.2569 -5.7748 43 1 4.4745 5.3613 -7.1574 44 1 4.6844 2.8857 -4.3335 45 1 5.2995 3.2579 -5.9615 46 1 5.8310 4.2270 -4.5660 47 1 3.0120 4.1544 1.3180 48 1 1.7593 0.6309 2.6646 49 1 1.0100 2.3552 4.3673 50 1 1.4813 3.7074 3.2052 51 1 3.8784 2.8781 3.2121 52 1 3.4072 1.5262 4.3747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942118351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:03 Heat of formation + Delta-G solvation = 60.162175 kcal Electronic energy + Delta-G solvation = -30808.107168 eV Core-core repulsion = 26809.587878 eV Total energy + Delta-G solvation = -3998.519290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.78546 -40.97580 -39.13647 -38.12278 -36.21779 -35.58417 -34.20958 -32.95265 -31.91142 -31.35830 -30.71125 -27.43995 -27.19543 -25.57647 -24.75220 -23.77704 -23.22902 -22.92159 -22.64871 -21.58510 -21.06185 -20.20255 -18.84493 -18.50258 -17.66187 -17.26845 -16.95756 -16.71908 -16.06343 -15.86297 -15.61967 -15.59369 -15.45315 -15.22396 -14.93228 -14.68687 -14.56350 -14.42719 -14.24943 -13.64110 -13.48874 -13.08346 -13.06232 -13.03252 -12.77422 -12.73794 -12.61149 -12.40215 -12.33777 -12.30703 -12.09993 -12.03542 -12.01397 -11.94591 -11.70529 -11.59713 -11.40391 -11.33469 -11.09336 -10.57803 -10.24410 -9.94509 -9.74774 -8.72973 -7.87714 -5.34042 0.48176 0.97887 1.46000 1.47030 1.48795 1.57741 2.13290 2.33588 2.51023 3.03364 3.22024 3.27794 3.44691 3.61076 3.71726 3.82694 3.96357 4.00006 4.00596 4.01773 4.10049 4.14137 4.32590 4.33778 4.35825 4.47696 4.58089 4.69783 4.70449 4.72375 4.78275 4.82429 4.82822 4.83588 4.88562 4.98942 5.02984 5.08281 5.12039 5.16966 5.22284 5.26482 5.27646 5.29102 5.36265 5.49045 5.50205 5.62725 5.68030 5.82934 6.37328 6.45681 6.88952 7.12030 7.16952 7.82689 8.36193 9.19480 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002233 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.355829 B =12534.678229 C =12710.709078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.268 5.268 4 N -0.266 5.266 5 C -0.037 4.037 6 C 0.598 3.402 7 O -0.575 6.575 8 N -0.695 5.695 9 C 0.169 3.831 10 H 0.060 0.940 11 C -0.132 4.132 12 C 0.184 3.816 13 N -0.609 5.609 14 C -0.261 4.261 15 H 0.074 0.926 16 C -0.055 4.055 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.264 1.264 22 C 0.151 3.849 23 C -0.099 4.099 24 H 0.078 0.922 25 C -0.133 4.133 26 C -0.204 4.204 27 C 0.060 3.940 28 C -0.103 4.103 29 C -0.161 4.161 30 C -0.158 4.158 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.412 0.588 37 H 0.059 0.941 38 H 0.045 0.955 39 H -0.008 1.008 40 H 0.057 0.943 41 H 0.250 0.750 42 H 0.012 0.988 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.152 0.848 48 H 0.146 0.854 49 H 0.125 0.875 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -26.354 20.937 33.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.057 5.057 4 N -0.102 5.102 5 C -0.196 4.196 6 C 0.384 3.616 7 O -0.453 6.453 8 N -0.345 5.345 9 C 0.064 3.936 10 H 0.079 0.921 11 C -0.173 4.173 12 C 0.058 3.942 13 N -0.332 5.332 14 C -0.391 4.391 15 H 0.092 0.908 16 C -0.250 4.250 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.213 1.213 20 H -0.223 1.223 21 H -0.188 1.188 22 C 0.025 3.975 23 C -0.120 4.120 24 H 0.096 0.904 25 C -0.191 4.191 26 C -0.232 4.232 27 C -0.065 4.065 28 C -0.122 4.122 29 C -0.199 4.199 30 C -0.196 4.196 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.249 0.751 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.010 0.990 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.170 0.830 48 H 0.164 0.836 49 H 0.143 0.857 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.062 -26.246 20.230 33.202 hybrid contribution -0.467 1.438 -0.393 1.563 sum -2.529 -24.808 19.836 31.864 Atomic orbital electron populations 1.22167 0.92755 1.04988 1.02519 1.22481 0.96540 0.75115 1.07411 1.45919 1.44748 1.13300 1.01709 1.73457 1.17593 1.04359 1.14809 1.21650 1.10192 0.93394 0.94322 1.17259 0.76854 0.85416 0.82063 1.90770 1.49170 1.27581 1.77802 1.45876 1.66170 1.17744 1.04719 1.20756 0.96084 0.87412 0.89306 0.92140 1.22343 0.98155 0.98176 0.98595 1.20460 0.96706 0.92058 0.85011 1.44348 1.38356 1.48377 1.02129 1.19571 1.33599 0.96469 0.89450 0.90840 1.25879 1.03155 0.94990 1.00965 1.70215 1.46475 1.02561 1.39162 0.85219 0.78852 0.76576 0.79529 1.21335 1.22337 1.18847 1.21069 0.89380 0.89204 0.97853 1.21763 0.99585 0.97118 0.93519 0.90407 1.21700 0.96680 0.98266 1.02438 1.21485 1.09457 0.99241 0.92980 1.20794 1.03625 0.91402 0.90697 1.20510 1.08102 1.00714 0.82889 1.23159 0.98339 0.98148 1.00209 1.23181 0.92844 1.03463 1.00097 0.93553 0.87207 0.91794 0.87035 0.84883 0.75108 0.92254 0.93577 0.99035 0.92411 0.94142 0.96980 0.91370 0.91747 0.90790 0.93339 0.83033 0.83610 0.85718 0.89706 0.89504 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 71.98 0.74 -0.47 16 2 C 0.10 0.84 6.74 86.38 0.58 1.42 16 3 N -0.27 -4.91 3.30 -334.60 -1.10 -6.02 16 4 N -0.27 -6.72 11.67 -48.18 -0.56 -7.29 16 5 C -0.04 -1.13 7.13 42.45 0.30 -0.83 16 6 C 0.60 21.60 7.79 86.75 0.68 22.27 16 7 O -0.58 -25.15 16.59 -3.96 -0.07 -25.21 16 8 N -0.70 -22.84 4.36 -445.42 -1.94 -24.78 16 9 C 0.17 6.43 1.88 45.02 0.08 6.51 16 10 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 11 C -0.13 -5.81 5.65 30.67 0.17 -5.64 16 12 C 0.18 9.76 5.31 86.36 0.46 10.22 16 13 N -0.61 -31.91 2.99 -699.12 -2.09 -34.00 16 14 C -0.26 -14.65 9.59 84.03 0.81 -13.84 16 15 H 0.07 3.94 7.89 -2.91 -0.02 3.92 16 16 C -0.05 -3.15 4.91 84.86 0.42 -2.74 16 17 N -0.94 -57.91 11.19 21.65 0.24 -57.67 16 18 Si 0.97 45.95 29.59 68.60 2.03 47.98 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 20 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 22 C 0.15 6.41 5.80 86.36 0.50 6.91 16 23 C -0.10 -3.41 2.46 -10.72 -0.03 -3.43 16 24 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 25 C -0.13 -3.58 9.03 71.98 0.65 -2.93 16 26 C -0.20 -5.34 9.86 22.41 0.22 -5.12 16 27 C 0.06 1.12 6.60 41.40 0.27 1.39 16 28 C -0.10 -1.07 5.94 -11.52 -0.07 -1.14 16 29 C -0.16 -1.59 10.05 30.59 0.31 -1.29 16 30 C -0.16 -1.50 10.05 30.62 0.31 -1.19 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.13 0.22 7.12 -2.39 -0.02 0.21 16 36 H 0.41 11.60 8.03 -92.70 -0.74 10.86 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.06 3.41 6.04 -2.39 -0.01 3.40 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 2.73 7.94 -2.39 -0.02 2.71 16 44 H 0.06 1.55 7.36 -2.39 -0.02 1.53 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 48 H 0.15 0.61 7.17 -2.39 -0.02 0.59 16 49 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 50 H 0.08 1.17 7.97 -2.39 -0.02 1.15 16 51 H 0.09 1.13 7.94 -2.39 -0.02 1.11 16 52 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -77.49 417.27 3.07 -74.42 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.17 Total: 22.45 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.40 Total: 10.11 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -5.46 Total: -129.75 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.07 Total: -25.21 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.49 3.07 -74.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942118351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.578 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds