Wall clock time and date at job start Wed Apr 1 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46823 * 2 1 4 4 C 1.34264 * 125.75405 * 124.99929 * 3 2 1 5 5 C 1.38040 * 107.41523 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41445 * 179.97438 * 5 4 3 7 7 O 1.21605 * 119.99742 * 180.02562 * 6 5 4 8 8 N 1.34769 * 120.00221 * 0.02562 * 6 5 4 9 9 C 1.46504 * 120.00573 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.45260 * 34.97224 * 9 8 6 11 11 C 1.53043 * 109.45718 * 275.00202 * 9 8 6 12 12 C 1.53193 * 109.30963 * 178.62629 * 11 9 8 13 13 N 1.46924 * 108.77570 * 54.63298 * 12 11 9 14 14 C 1.36942 * 120.62759 * 126.37031 * 13 12 11 15 15 H 1.07996 * 119.99665 * 209.86526 * 14 13 12 16 16 C 1.38808 * 119.99877 * 29.86809 * 14 13 12 17 17 N 1.31618 * 120.00552 * 15.52077 * 16 14 13 18 18 Si 1.86804 * 119.99669 * 195.52646 * 16 14 13 19 19 H 1.48498 * 109.47155 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.46909 * 300.00011 * 18 16 14 21 21 H 1.48501 * 109.47361 * 59.99417 * 18 16 14 22 22 C 1.46923 * 118.74187 * 306.64404 * 13 12 11 23 23 H 1.09004 * 109.58631 * 293.57127 * 22 13 12 24 24 C 1.52996 * 109.58910 * 173.14615 * 22 13 12 25 25 C 1.52760 * 109.00965 * 53.30656 * 22 13 12 26 26 C 1.41295 * 107.17278 * 0.24054 * 5 4 3 27 27 C 1.50697 * 125.99092 * 179.73409 * 26 5 4 28 28 C 1.52998 * 117.50090 * 188.74955 * 27 26 5 29 29 C 1.53006 * 117.49744 * 120.08767 * 27 26 5 30 30 N 1.30446 * 108.01893 * 359.58931 * 26 5 4 31 31 H 1.09004 * 109.47068 * 60.00576 * 1 2 3 32 32 H 1.09003 * 109.47078 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47572 * 300.00467 * 1 2 3 34 34 H 1.08995 * 109.47661 * 239.99942 * 2 1 3 35 35 H 1.09004 * 109.47068 * 119.99424 * 2 1 3 36 36 H 1.07995 * 126.28993 * 359.97438 * 4 3 2 37 37 H 0.97009 * 119.99697 * 0.02562 * 8 6 5 38 38 H 1.08996 * 109.49796 * 58.67194 * 11 9 8 39 39 H 1.09000 * 109.52406 * 298.59412 * 11 9 8 40 40 H 1.08998 * 109.58588 * 294.84653 * 12 11 9 41 41 H 1.08997 * 109.70252 * 174.49039 * 12 11 9 42 42 H 0.96996 * 120.00275 * 179.97438 * 17 16 14 43 43 H 1.08997 * 109.47177 * 59.99973 * 24 22 13 44 44 H 1.08998 * 109.46969 * 180.02562 * 24 22 13 45 45 H 1.08997 * 109.47304 * 299.99802 * 24 22 13 46 46 H 1.08997 * 109.56594 * 185.55354 * 25 22 13 47 47 H 1.09005 * 109.35800 * 65.49870 * 25 22 13 48 48 H 1.09006 * 115.54974 * 334.42195 * 27 26 5 49 49 H 1.09006 * 117.49861 * 359.97438 * 28 27 26 50 50 H 1.08996 * 117.50235 * 145.02116 * 28 27 26 51 51 H 1.09002 * 117.49170 * 214.98035 * 29 27 26 52 52 H 1.08993 * 117.49774 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8689 1.9127 0.8925 5 6 3.0712 3.2309 0.5364 6 6 3.9324 4.2035 1.2336 7 8 4.0251 5.3420 0.8164 8 7 4.6167 3.8309 2.3332 9 6 5.4720 4.7976 3.0263 10 1 5.0188 5.7874 2.9724 11 6 6.8490 4.8301 2.3592 12 6 7.7294 5.8664 3.0649 13 7 7.7618 5.5598 4.5014 14 6 8.9552 5.4101 5.1561 15 1 9.0242 4.7514 6.0091 16 6 10.0761 6.1051 4.7233 17 7 9.9422 7.1224 3.8989 18 14 11.7749 5.5965 5.3108 19 1 12.7954 6.4916 4.7088 20 1 11.8381 5.6996 6.7909 21 1 12.0414 4.1944 4.9005 22 6 6.4895 5.4107 5.2209 23 1 5.9709 6.3691 5.2486 24 6 6.7604 4.9295 6.6477 25 6 5.6230 4.3851 4.4923 26 6 2.2936 3.4753 -0.6177 27 6 2.1963 4.7836 -1.3593 28 6 1.1420 4.8935 -2.4626 29 6 2.6255 4.7968 -2.8278 30 7 1.6772 2.3691 -0.9306 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.3132 1.4025 1.7343 37 1 4.5430 2.9226 2.6657 38 1 6.7384 5.1011 1.3093 39 1 7.3134 3.8468 2.4341 40 1 7.3140 6.8627 2.9132 41 1 8.7405 5.8265 2.6598 42 1 10.7254 7.6082 3.5968 43 1 7.3855 5.6577 7.1642 44 1 5.8153 4.8191 7.1795 45 1 7.2732 3.9682 6.6157 46 1 4.6398 4.3394 4.9606 47 1 6.0987 3.4058 4.5475 48 1 2.4002 5.6758 -0.7672 49 1 0.5191 4.0194 -2.6524 50 1 0.6526 5.8581 -2.5967 51 1 3.1113 5.6980 -3.2020 52 1 2.9786 3.8594 -3.2574 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947358206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:53 Heat of formation + Delta-G solvation = 58.812786 kcal Electronic energy + Delta-G solvation = -30855.871821 eV Core-core repulsion = 26857.294017 eV Total energy + Delta-G solvation = -3998.577804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49252 -40.59916 -39.06099 -38.10791 -35.99086 -35.11303 -34.20092 -33.05156 -31.80407 -31.03779 -30.27412 -27.90662 -26.67392 -25.62496 -24.59638 -23.57811 -23.28445 -22.76061 -22.22369 -21.25746 -20.77186 -20.14438 -18.73600 -18.16956 -17.27763 -17.13641 -16.80931 -16.56347 -16.15725 -15.79836 -15.74586 -15.55201 -15.44902 -15.07265 -14.84626 -14.75631 -14.49051 -14.19309 -14.01595 -13.43412 -13.30176 -13.11405 -12.91258 -12.79774 -12.69305 -12.63942 -12.58070 -12.48222 -12.43585 -12.32859 -12.08908 -11.83942 -11.81271 -11.73103 -11.67824 -11.45362 -11.38673 -11.22124 -10.68893 -10.51396 -10.20353 -9.99659 -9.54161 -8.61016 -7.80893 -5.27617 0.55369 1.03830 1.40816 1.49059 1.51357 1.57757 2.31049 2.46836 2.55046 3.02552 3.28798 3.35431 3.55548 3.63202 3.85391 3.92738 3.97732 4.08756 4.09260 4.13358 4.14796 4.30445 4.33045 4.37954 4.44630 4.46268 4.64859 4.67219 4.72456 4.76946 4.80214 4.81365 4.88108 4.89706 4.94667 5.00046 5.13262 5.14987 5.20065 5.21939 5.22887 5.24626 5.42759 5.45609 5.53318 5.59036 5.65716 5.74770 5.75846 5.94163 6.46147 6.53806 6.77843 7.20020 7.43401 7.92205 8.45655 9.26613 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.002417 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.474420 B =11582.493137 C =12459.196620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.352 5.352 4 C 0.124 3.876 5 C -0.313 4.313 6 C 0.588 3.412 7 O -0.586 6.586 8 N -0.707 5.707 9 C 0.166 3.834 10 H 0.053 0.947 11 C -0.128 4.128 12 C 0.184 3.816 13 N -0.602 5.602 14 C -0.248 4.248 15 H 0.081 0.919 16 C -0.058 4.058 17 N -0.942 5.942 18 Si 0.964 3.036 19 H -0.302 1.302 20 H -0.273 1.273 21 H -0.277 1.277 22 C 0.158 3.842 23 H 0.008 0.992 24 C -0.126 4.126 25 C -0.116 4.116 26 C 0.145 3.855 27 C -0.104 4.104 28 C -0.150 4.150 29 C -0.157 4.157 30 N -0.316 5.316 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.229 0.771 37 H 0.411 0.589 38 H 0.040 0.960 39 H 0.062 0.938 40 H -0.015 1.015 41 H 0.052 0.948 42 H 0.246 0.754 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.100 0.900 50 H 0.113 0.887 51 H 0.107 0.893 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 -18.805 -6.235 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 N -0.130 5.130 4 C -0.029 4.029 5 C -0.328 4.328 6 C 0.378 3.622 7 O -0.467 6.467 8 N -0.358 5.358 9 C 0.061 3.939 10 H 0.071 0.929 11 C -0.169 4.169 12 C 0.058 3.942 13 N -0.326 5.326 14 C -0.378 4.378 15 H 0.099 0.901 16 C -0.253 4.253 17 N -0.589 5.589 18 Si 0.793 3.207 19 H -0.228 1.228 20 H -0.199 1.199 21 H -0.203 1.203 22 C 0.052 3.948 23 H 0.025 0.975 24 C -0.184 4.184 25 C -0.155 4.155 26 C -0.022 4.022 27 C -0.124 4.124 28 C -0.187 4.187 29 C -0.195 4.195 30 N -0.137 5.137 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.157 0.843 36 H 0.246 0.754 37 H 0.248 0.752 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.097 0.903 48 H 0.133 0.867 49 H 0.118 0.882 50 H 0.132 0.868 51 H 0.126 0.874 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.322 -18.680 -7.367 29.289 hybrid contribution 1.894 0.715 0.625 2.119 sum -19.429 -17.965 -6.742 27.307 Atomic orbital electron populations 1.22025 0.93421 1.04210 1.02276 1.22298 0.96483 0.74841 1.06595 1.48888 1.33541 1.11201 1.19337 1.23668 0.91559 0.92377 0.95320 1.20178 1.12504 0.95817 1.04335 1.17617 0.78470 0.86473 0.79688 1.90727 1.66764 1.22215 1.67010 1.45764 1.46480 1.15354 1.28171 1.20606 0.88931 0.92185 0.92213 0.92906 1.22288 0.96187 1.00324 0.98078 1.20419 0.97466 0.92319 0.84028 1.44398 1.01431 1.82755 1.04030 1.19516 0.86906 1.18752 1.12647 0.90139 1.25900 1.02383 0.95992 1.00996 1.70201 1.28913 1.20912 1.38836 0.85388 0.79925 0.77332 0.78097 1.22827 1.19879 1.20259 1.20561 0.86520 0.94975 0.92716 0.97450 1.21707 1.01267 1.00808 0.94570 1.22101 1.00664 1.00267 0.92513 1.21534 0.93378 0.93664 0.93586 1.20452 1.07811 0.93136 0.91036 1.23037 0.91556 1.04186 0.99933 1.22987 0.98306 1.03660 0.94559 1.76999 1.25013 0.96904 1.14825 0.93225 0.87955 0.92700 0.88481 0.84349 0.75437 0.75188 0.94099 0.91922 0.99735 0.92917 0.94489 0.94322 0.90414 0.92424 0.89154 0.90275 0.86727 0.88164 0.86827 0.87441 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.09 71.98 0.73 -0.47 16 2 C 0.12 0.78 7.21 86.38 0.62 1.41 16 3 N -0.35 -5.67 3.65 -346.30 -1.26 -6.94 16 4 C 0.12 1.94 10.95 84.27 0.92 2.87 16 5 C -0.31 -8.05 6.13 -20.15 -0.12 -8.17 16 6 C 0.59 18.58 7.78 86.67 0.67 19.26 16 7 O -0.59 -23.98 14.66 -4.05 -0.06 -24.04 16 8 N -0.71 -18.82 5.07 -445.67 -2.26 -21.07 16 9 C 0.17 5.68 2.42 45.02 0.11 5.78 16 10 H 0.05 2.16 7.57 -2.39 -0.02 2.14 16 11 C -0.13 -5.25 5.65 30.67 0.17 -5.08 16 12 C 0.18 9.42 5.29 86.36 0.46 9.87 16 13 N -0.60 -29.83 2.99 -676.05 -2.02 -31.86 16 14 C -0.25 -13.22 8.57 84.03 0.72 -12.50 16 15 H 0.08 4.04 6.23 -2.91 -0.02 4.02 16 16 C -0.06 -3.26 4.94 84.86 0.42 -2.84 16 17 N -0.94 -57.45 11.23 21.65 0.24 -57.21 16 18 Si 0.96 44.97 29.58 68.60 2.03 47.00 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 22 C 0.16 6.26 3.48 44.83 0.16 6.41 16 23 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 24 C -0.13 -4.27 7.94 71.98 0.57 -3.70 16 25 C -0.12 -3.49 4.81 30.53 0.15 -3.35 16 26 C 0.14 3.96 6.79 43.52 0.30 4.26 16 27 C -0.10 -2.85 5.65 -11.54 -0.07 -2.92 16 28 C -0.15 -3.15 10.14 30.62 0.31 -2.84 16 29 C -0.16 -3.62 10.24 30.62 0.31 -3.30 16 30 N -0.32 -7.50 11.92 -46.68 -0.56 -8.05 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.14 -0.09 8.06 -2.38 -0.02 -0.11 16 36 H 0.23 1.15 7.46 -2.91 -0.02 1.13 16 37 H 0.41 7.25 7.53 -92.70 -0.70 6.56 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.05 3.03 6.14 -2.39 -0.01 3.02 16 42 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.04 1.48 7.62 -2.39 -0.02 1.46 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 1.90 7.44 -2.39 -0.02 1.88 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 48 H 0.11 3.68 6.73 -2.38 -0.02 3.66 16 49 H 0.10 2.07 7.90 -2.38 -0.02 2.05 16 50 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -79.41 413.48 2.76 -76.65 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.22 Total: 20.82 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.43 Total: 4.70 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -5.86 Total: -125.13 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.41 2.76 -76.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947358206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.466 kcal (2) G-P(sol) polarization free energy of solvation -79.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds