Wall clock time and date at job start Wed Apr 1 2020 05:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 N 1.28474 * 124.87962 * 90.02412 * 3 2 1 5 5 C 1.31806 * 110.07002 * 180.02562 * 4 3 2 6 6 C 1.47711 * 126.51892 * 179.97438 * 5 4 3 7 7 O 1.21567 * 119.99903 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99847 * 0.02733 * 6 5 4 9 9 C 1.46499 * 120.00048 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46253 * 324.97867 * 9 8 6 11 11 C 1.53041 * 109.44689 * 84.93765 * 9 8 6 12 12 C 1.52766 * 109.38583 * 181.25237 * 11 9 8 13 13 N 1.46923 * 109.00738 * 305.59243 * 12 11 9 14 14 C 1.36931 * 120.62975 * 233.58307 * 13 12 11 15 15 H 1.08000 * 120.00087 * 150.27281 * 14 13 12 16 16 C 1.38815 * 119.99962 * 330.26733 * 14 13 12 17 17 N 1.31616 * 119.99923 * 344.42202 * 16 14 13 18 18 Si 1.86802 * 119.99860 * 164.42123 * 16 14 13 19 19 H 1.48492 * 109.47071 * 266.31628 * 18 16 14 20 20 H 1.48504 * 109.47144 * 26.31902 * 18 16 14 21 21 H 1.48504 * 109.46762 * 146.31867 * 18 16 14 22 22 C 1.46928 * 118.73861 * 53.30417 * 13 12 11 23 23 H 1.09001 * 109.58728 * 66.57807 * 22 13 12 24 24 C 1.52997 * 109.58595 * 186.85390 * 22 13 12 25 25 C 1.53036 * 109.45985 * 204.99997 * 9 8 6 26 26 C 1.41502 * 106.96674 * 0.22602 * 5 4 3 27 27 C 1.35033 * 124.88802 * 270.02733 * 3 2 1 28 28 C 1.50701 * 126.38289 * 0.03043 * 27 3 2 29 29 C 1.52993 * 117.49627 * 213.74561 * 28 27 3 30 30 C 1.53006 * 117.49526 * 145.08668 * 28 27 3 31 31 H 1.08999 * 109.47518 * 299.99463 * 1 2 3 32 32 H 1.08994 * 109.47266 * 59.99926 * 1 2 3 33 33 H 1.09006 * 109.46928 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47175 * 240.00118 * 2 1 3 35 35 H 1.08999 * 109.47621 * 120.00377 * 2 1 3 36 36 H 0.96999 * 119.99922 * 359.97438 * 8 6 5 37 37 H 1.09004 * 109.50258 * 301.33440 * 11 9 8 38 38 H 1.09006 * 109.49628 * 61.42751 * 11 9 8 39 39 H 1.08992 * 109.51143 * 185.70597 * 12 11 9 40 40 H 1.08999 * 109.42622 * 65.42246 * 12 11 9 41 41 H 0.97002 * 120.00277 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.47164 * 60.00637 * 24 22 13 43 43 H 1.09005 * 109.47120 * 180.02562 * 24 22 13 44 44 H 1.08999 * 109.47362 * 300.00166 * 24 22 13 45 45 H 1.08999 * 109.49759 * 58.68156 * 25 9 8 46 46 H 1.08999 * 109.50063 * 298.58055 * 25 9 8 47 47 H 1.08004 * 127.25388 * 179.75057 * 26 5 4 48 48 H 1.08994 * 115.55334 * 359.41933 * 28 27 3 49 49 H 1.08998 * 117.50398 * 0.02562 * 29 28 27 50 50 H 1.09008 * 117.49927 * 145.02140 * 29 28 27 51 51 H 1.09001 * 117.49670 * 214.97401 * 30 28 27 52 52 H 1.08997 * 117.49976 * 0.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2636 2.0737 1.0539 5 6 2.6878 3.2753 0.7170 6 6 3.0719 4.3627 1.6400 7 8 3.4484 5.4307 1.1978 8 7 3.0051 4.1708 2.9724 9 6 3.3866 5.2490 3.8879 10 1 4.2120 5.8159 3.4573 11 6 2.1903 6.1778 4.1078 12 6 2.5986 7.3189 5.0378 13 7 3.1586 6.7529 6.2726 14 6 2.6656 7.1221 7.4955 15 1 2.6965 6.4278 8.3222 16 6 2.1263 8.3888 7.6728 17 7 2.3566 9.3323 6.7846 18 14 1.0735 8.7542 9.1721 19 1 -0.3577 8.5487 8.8339 20 1 1.4563 7.8424 10.2799 21 1 1.2852 10.1622 9.5942 22 6 4.2535 5.7784 6.1699 23 1 5.1430 6.2686 5.7743 24 6 4.5583 5.2018 7.5539 25 6 3.8229 4.6504 5.2270 26 6 2.6996 3.3276 -0.6970 27 6 2.2753 2.1095 -1.1076 28 6 2.1127 1.6538 -2.5348 29 6 3.1036 2.1960 -3.5667 30 6 1.6558 2.6931 -3.5606 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.7044 3.3187 3.3252 37 1 1.8654 6.5856 3.1506 38 1 1.3729 5.6170 4.5612 39 1 1.7243 7.9242 5.2770 40 1 3.3497 7.9367 4.5456 41 1 1.9795 10.2174 6.9082 42 1 3.6692 4.7076 7.9455 43 1 5.3710 4.4795 7.4756 44 1 4.8523 6.0075 8.2265 45 1 4.6600 3.9710 5.0664 46 1 2.9901 4.1040 5.6699 47 1 2.9885 4.1627 -1.3179 48 1 1.7608 0.6304 -2.6644 49 1 3.8734 2.8821 -3.2133 50 1 3.4034 1.5294 -4.3754 51 1 1.0037 2.3532 -4.3652 52 1 1.4732 3.7065 -3.2032 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947379132.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:31 Heat of formation + Delta-G solvation = 61.882532 kcal Electronic energy + Delta-G solvation = -30650.569911 eV Core-core repulsion = 26652.125221 eV Total energy + Delta-G solvation = -3998.444690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.79065 -40.88400 -39.21357 -38.12531 -36.13771 -35.58807 -34.22693 -33.05755 -31.65509 -31.33331 -30.61044 -28.02919 -26.86389 -25.66235 -24.74968 -23.74875 -23.27025 -23.20092 -22.19219 -21.52448 -21.08851 -20.27682 -18.71246 -18.25574 -17.66493 -17.25574 -17.00814 -16.74169 -16.06040 -15.85716 -15.72057 -15.58377 -15.45620 -15.26233 -14.96302 -14.78684 -14.54780 -14.44854 -14.32687 -13.50276 -13.34113 -13.07703 -12.98834 -12.78345 -12.72934 -12.67205 -12.63179 -12.40567 -12.38656 -12.30901 -12.07238 -12.02535 -11.95785 -11.86978 -11.73004 -11.52094 -11.46988 -11.33163 -11.04460 -10.55484 -10.25654 -9.96078 -9.75372 -8.64652 -7.83093 -5.29952 0.47299 0.97310 1.45594 1.47555 1.48885 1.57817 2.12117 2.32516 2.53065 3.03148 3.21578 3.32937 3.44323 3.58734 3.77393 3.86820 3.96410 4.00145 4.00846 4.04130 4.09723 4.25158 4.32311 4.33691 4.37750 4.47356 4.60274 4.69981 4.71682 4.74872 4.77778 4.81075 4.82421 4.83033 4.94383 5.02845 5.05254 5.07651 5.14743 5.16855 5.22237 5.27547 5.28204 5.37670 5.45559 5.53086 5.55172 5.69915 5.73663 5.82504 6.43514 6.45073 6.88403 7.16006 7.17297 7.88784 8.42700 9.24725 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.002173 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.695658 B =12880.718523 C =13151.879528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.268 5.268 4 N -0.266 5.266 5 C -0.038 4.038 6 C 0.598 3.402 7 O -0.575 6.575 8 N -0.698 5.698 9 C 0.161 3.839 10 H 0.060 0.940 11 C -0.130 4.130 12 C 0.186 3.814 13 N -0.603 5.603 14 C -0.248 4.248 15 H 0.081 0.919 16 C -0.058 4.058 17 N -0.941 5.941 18 Si 0.965 3.035 19 H -0.290 1.290 20 H -0.263 1.263 21 H -0.299 1.299 22 C 0.160 3.840 23 H 0.014 0.986 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.203 4.203 27 C 0.060 3.940 28 C -0.103 4.103 29 C -0.158 4.158 30 C -0.161 4.161 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.413 0.587 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.055 0.945 40 H -0.011 1.011 41 H 0.247 0.753 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.152 0.848 48 H 0.146 0.854 49 H 0.086 0.914 50 H 0.126 0.874 51 H 0.125 0.875 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -26.335 -20.256 33.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.016 4.016 3 N -0.057 5.057 4 N -0.102 5.102 5 C -0.196 4.196 6 C 0.384 3.616 7 O -0.453 6.453 8 N -0.348 5.348 9 C 0.057 3.943 10 H 0.079 0.921 11 C -0.171 4.171 12 C 0.059 3.941 13 N -0.326 5.326 14 C -0.378 4.378 15 H 0.098 0.902 16 C -0.253 4.253 17 N -0.588 5.588 18 Si 0.794 3.206 19 H -0.217 1.217 20 H -0.187 1.187 21 H -0.226 1.226 22 C 0.054 3.946 23 H 0.031 0.969 24 C -0.183 4.183 25 C -0.157 4.157 26 C -0.232 4.232 27 C -0.065 4.065 28 C -0.122 4.122 29 C -0.196 4.196 30 C -0.199 4.199 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.130 0.870 36 H 0.250 0.750 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.007 0.993 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.170 0.830 48 H 0.164 0.836 49 H 0.105 0.895 50 H 0.144 0.856 51 H 0.143 0.857 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.055 -26.238 -19.545 32.782 hybrid contribution -0.497 1.540 0.344 1.655 sum -2.552 -24.697 -19.201 31.387 Atomic orbital electron populations 1.22164 0.92730 1.05003 1.02523 1.22483 0.96550 0.75102 1.07424 1.45925 1.44662 1.13386 1.01705 1.73457 1.17569 1.04387 1.14815 1.21653 1.10369 0.93262 0.94340 1.17278 0.76783 0.85464 0.82110 1.90767 1.49287 1.27446 1.77816 1.45913 1.66545 1.17579 1.04766 1.20758 0.96267 0.87658 0.89617 0.92145 1.22251 0.98053 0.98237 0.98520 1.20329 0.96520 0.91985 0.85282 1.44405 1.37424 1.48844 1.01973 1.19559 1.32988 0.95293 0.89948 0.90175 1.25906 1.03304 0.95376 1.00681 1.70208 1.47608 1.02286 1.38659 0.85278 0.78714 0.76691 0.79951 1.21668 1.18685 1.22646 1.20637 0.89290 0.89173 0.95520 0.96855 1.21707 1.01210 0.99991 0.95435 1.22188 1.02019 0.98414 0.93036 1.21492 1.09601 0.99102 0.92961 1.20803 1.03679 0.91329 0.90711 1.20502 1.08112 1.00716 0.82873 1.23181 0.92859 1.03462 1.00093 1.23175 0.98289 0.98168 1.00227 0.93554 0.91786 0.87182 0.84872 0.87033 0.75029 0.93779 0.92235 0.92671 0.99260 0.94420 0.92631 0.90445 0.93943 0.89362 0.90741 0.83010 0.83596 0.89508 0.85581 0.85697 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 71.98 0.74 -0.47 16 2 C 0.10 0.84 6.74 86.38 0.58 1.43 16 3 N -0.27 -4.94 3.30 -334.61 -1.10 -6.04 16 4 N -0.27 -6.76 11.67 -48.18 -0.56 -7.33 16 5 C -0.04 -1.16 7.13 42.46 0.30 -0.85 16 6 C 0.60 21.70 7.79 86.75 0.68 22.38 16 7 O -0.58 -25.26 16.59 -3.93 -0.07 -25.33 16 8 N -0.70 -22.99 5.07 -445.41 -2.26 -25.25 16 9 C 0.16 6.12 2.42 45.02 0.11 6.23 16 10 H 0.06 2.60 7.58 -2.39 -0.02 2.58 16 11 C -0.13 -5.69 5.63 30.53 0.17 -5.51 16 12 C 0.19 9.76 5.26 86.22 0.45 10.21 16 13 N -0.60 -30.87 2.99 -676.06 -2.02 -32.90 16 14 C -0.25 -13.54 8.58 84.04 0.72 -12.82 16 15 H 0.08 4.15 6.23 -2.91 -0.02 4.13 16 16 C -0.06 -3.31 4.94 84.86 0.42 -2.90 16 17 N -0.94 -58.04 11.23 21.65 0.24 -57.80 16 18 Si 0.96 45.85 29.58 68.60 2.03 47.88 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 22 C 0.16 6.65 3.50 44.97 0.16 6.81 16 23 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 24 C -0.13 -4.51 7.95 71.98 0.57 -3.94 16 25 C -0.12 -3.97 4.84 30.67 0.15 -3.82 16 26 C -0.20 -5.36 9.86 22.41 0.22 -5.14 16 27 C 0.06 1.12 6.60 41.40 0.27 1.40 16 28 C -0.10 -1.07 5.94 -11.54 -0.07 -1.14 16 29 C -0.16 -1.50 10.05 30.62 0.31 -1.20 16 30 C -0.16 -1.60 10.06 30.62 0.31 -1.29 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.13 0.23 7.12 -2.39 -0.02 0.21 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.41 11.54 8.33 -92.71 -0.77 10.76 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 39 H 0.05 3.24 6.14 -2.39 -0.01 3.23 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.05 1.96 7.44 -2.38 -0.02 1.94 16 43 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.04 1.68 7.62 -2.39 -0.02 1.66 16 45 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 48 H 0.15 0.61 7.17 -2.39 -0.02 0.59 16 49 H 0.09 1.13 7.95 -2.39 -0.02 1.11 16 50 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.08 1.17 7.96 -2.39 -0.02 1.16 16 Total: -1.00 -77.48 415.00 2.49 -74.98 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.14 Total: 22.40 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.09 Total: 9.37 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -5.71 Total: -129.31 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.07 Total: -25.33 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.48 2.49 -74.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947379132.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.866 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds