Wall clock time and date at job start Wed Apr 1 2020 05:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46970 * 2 1 4 4 N 1.28460 * 124.88081 * 90.02566 * 3 2 1 5 5 C 1.31822 * 110.06895 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.51780 * 179.97438 * 5 4 3 7 7 O 1.21569 * 120.00150 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00181 * 0.02562 * 6 5 4 9 9 C 1.46495 * 120.00060 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.45476 * 34.97621 * 9 8 6 11 11 C 1.53039 * 109.46206 * 275.00213 * 9 8 6 12 12 C 1.53193 * 109.31319 * 178.61406 * 11 9 8 13 13 N 1.46932 * 108.77395 * 54.63137 * 12 11 9 14 14 C 1.36941 * 120.62840 * 126.39116 * 13 12 11 15 15 H 1.08001 * 120.00434 * 209.54632 * 14 13 12 16 16 C 1.38816 * 119.99785 * 29.54601 * 14 13 12 17 17 N 1.31610 * 120.00093 * 16.11392 * 16 14 13 18 18 Si 1.86800 * 119.99632 * 196.11853 * 16 14 13 19 19 H 1.48494 * 109.47174 * 94.02350 * 18 16 14 20 20 H 1.48505 * 109.46910 * 214.02130 * 18 16 14 21 21 H 1.48500 * 109.47374 * 334.01907 * 18 16 14 22 22 C 1.46925 * 118.74168 * 306.39389 * 13 12 11 23 23 H 1.08994 * 109.58310 * 293.81914 * 22 13 12 24 24 C 1.52996 * 109.58500 * 173.39602 * 22 13 12 25 25 C 1.53040 * 109.45932 * 154.92987 * 9 8 6 26 26 C 1.41502 * 106.96077 * 0.22545 * 5 4 3 27 27 C 1.35034 * 124.88123 * 270.02674 * 3 2 1 28 28 C 1.50700 * 126.38858 * 359.95772 * 27 3 2 29 29 C 1.52988 * 117.50142 * 213.75181 * 28 27 3 30 30 C 1.52997 * 117.49745 * 145.09068 * 28 27 3 31 31 H 1.09001 * 109.46757 * 300.00014 * 1 2 3 32 32 H 1.08999 * 109.46921 * 60.00302 * 1 2 3 33 33 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46879 * 239.99489 * 2 1 3 35 35 H 1.08999 * 109.46921 * 119.99698 * 2 1 3 36 36 H 0.97001 * 119.99914 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.49244 * 298.56221 * 11 9 8 38 38 H 1.08996 * 109.49598 * 58.66094 * 11 9 8 39 39 H 1.09001 * 109.58716 * 174.41883 * 12 11 9 40 40 H 1.08999 * 109.58484 * 294.84736 * 12 11 9 41 41 H 0.97002 * 120.00267 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.47306 * 300.70677 * 24 22 13 43 43 H 1.09000 * 109.47528 * 60.70806 * 24 22 13 44 44 H 1.09000 * 109.47151 * 180.71285 * 24 22 13 45 45 H 1.09003 * 109.50024 * 301.34458 * 25 9 8 46 46 H 1.09004 * 109.49726 * 61.43376 * 25 9 8 47 47 H 1.07997 * 127.24597 * 179.75737 * 26 5 4 48 48 H 1.09003 * 115.54871 * 359.42582 * 28 27 3 49 49 H 1.08997 * 117.50160 * 0.02562 * 29 28 27 50 50 H 1.09005 * 117.50327 * 145.02067 * 29 28 27 51 51 H 1.09001 * 117.50128 * 214.98426 * 30 28 27 52 52 H 1.08999 * 117.50001 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2637 2.0737 1.0538 5 6 2.6889 3.2751 0.7168 6 6 3.0733 4.3624 1.6398 7 8 3.4507 5.4301 1.1976 8 7 3.0057 4.1708 2.9722 9 6 3.3876 5.2490 3.8875 10 1 3.1023 6.2089 3.4569 11 6 4.9017 5.2187 4.1076 12 6 5.3016 6.3685 5.0376 13 7 4.5103 6.2752 6.2721 14 6 5.1257 6.2530 7.4953 15 1 4.6657 5.7318 8.3218 16 6 6.3408 6.9003 7.6727 17 7 6.7491 7.7871 6.7901 18 14 7.3964 6.5125 9.1643 19 1 8.3866 5.4638 8.8108 20 1 8.1097 7.7405 9.5986 21 1 6.5322 6.0250 10.2692 22 6 3.0463 6.2063 6.1693 23 1 2.6634 7.1459 5.7712 24 6 2.4465 5.9500 7.5533 25 6 2.6717 5.0584 5.2267 26 6 2.7013 3.3270 -0.6972 27 6 2.2753 2.1095 -1.1077 28 6 2.1142 1.6532 -2.5349 29 6 3.1052 2.1961 -3.5663 30 6 1.6570 2.6917 -3.5613 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.7043 3.3191 3.3250 37 1 5.1844 4.2688 4.5613 38 1 5.4108 5.3312 3.1504 39 1 6.3624 6.2929 5.2769 40 1 5.1025 7.3213 4.5471 41 1 7.5980 8.2397 6.9143 42 1 2.8367 5.0130 7.9506 43 1 2.7142 6.7678 8.2225 44 1 1.3614 5.8866 7.4730 45 1 1.5936 5.0566 5.0659 46 1 2.9754 4.1099 5.6697 47 1 2.9912 4.1617 -1.3181 48 1 1.7634 0.6293 -2.6644 49 1 3.8740 2.8830 -3.2126 50 1 3.4062 1.5295 -4.3746 51 1 1.0057 2.3510 -4.3662 52 1 1.4723 3.7048 -3.2041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947379134.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:41 Heat of formation + Delta-G solvation = 82.425429 kcal Electronic energy + Delta-G solvation = -30636.606595 eV Core-core repulsion = 26639.052711 eV Total energy + Delta-G solvation = -3997.553883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.89381 -39.39327 -37.63418 -37.47187 -34.91240 -34.46610 -32.35123 -31.38327 -30.54165 -30.25043 -29.23532 -26.34212 -25.30474 -24.48126 -23.87683 -22.79892 -22.56715 -21.79860 -20.81361 -20.25555 -19.61800 -18.96504 -17.82406 -16.76902 -16.20185 -16.08039 -15.63472 -15.46321 -15.01701 -14.90488 -14.60236 -14.39331 -13.89646 -13.77653 -13.69261 -13.48373 -13.17428 -13.01125 -12.73071 -12.66785 -12.51600 -12.14406 -11.97195 -11.84924 -11.53807 -11.40299 -11.21724 -11.14595 -11.05035 -10.85852 -10.83566 -10.74215 -10.61441 -10.24003 -10.08536 -9.97090 -9.87375 -9.65639 -9.31606 -9.22493 -8.93572 -8.58362 -8.34694 -6.57606 -5.71258 -3.14898 1.51721 1.92108 2.18703 3.40608 3.44808 3.48651 3.49628 3.49873 3.63958 3.96145 4.09369 4.41458 4.42901 4.54002 4.54321 4.56495 4.63800 4.71439 5.01887 5.17400 5.20488 5.23331 5.32519 5.39471 5.46545 5.48554 5.52019 5.56858 5.58300 5.68220 5.71084 5.82944 5.86984 6.07805 6.23465 6.27823 6.34583 6.38563 6.49635 6.53023 6.56922 6.60823 6.73425 6.88263 6.99716 7.10197 7.16974 7.45914 7.67413 7.75821 7.88731 7.95973 8.50628 8.53556 9.28568 9.92424 10.50099 11.37466 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002179 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.957711 B =12846.560730 C =13402.734892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.278 5.278 4 N -0.260 5.260 5 C -0.007 4.007 6 C 0.599 3.401 7 O -0.533 6.533 8 N -0.710 5.710 9 C 0.151 3.849 10 H 0.083 0.917 11 C -0.147 4.147 12 C 0.176 3.824 13 N -0.588 5.588 14 C -0.250 4.250 15 H 0.070 0.930 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.900 3.100 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.171 3.829 23 H 0.027 0.973 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.178 4.178 27 C 0.044 3.956 28 C -0.098 4.098 29 C -0.162 4.162 30 C -0.162 4.162 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.400 0.600 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.021 0.979 41 H 0.253 0.747 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.159 0.841 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 -17.556 -19.451 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.066 5.066 4 N -0.095 5.095 5 C -0.167 4.167 6 C 0.383 3.617 7 O -0.408 6.408 8 N -0.360 5.360 9 C 0.048 3.952 10 H 0.101 0.899 11 C -0.187 4.187 12 C 0.049 3.951 13 N -0.311 5.311 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.546 5.546 18 Si 0.730 3.270 19 H -0.216 1.216 20 H -0.219 1.219 21 H -0.204 1.204 22 C 0.064 3.936 23 H 0.045 0.955 24 C -0.192 4.192 25 C -0.173 4.173 26 C -0.206 4.206 27 C -0.080 4.080 28 C -0.117 4.117 29 C -0.200 4.200 30 C -0.199 4.199 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.234 0.766 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.176 0.824 48 H 0.132 0.868 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.119 0.881 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.184 -17.453 -18.762 28.817 hybrid contribution 0.660 -0.265 0.187 0.735 sum -12.524 -17.718 -18.575 28.562 Atomic orbital electron populations 1.22180 0.93462 1.03506 1.03712 1.21965 0.95974 0.77391 1.05253 1.45410 1.46498 1.12297 1.02413 1.73540 1.17564 1.04891 1.13506 1.22022 1.07639 0.92945 0.94100 1.16897 0.77735 0.85345 0.81753 1.90799 1.47304 1.25584 1.77114 1.46174 1.66622 1.17934 1.05249 1.21078 0.95844 0.89845 0.88467 0.89938 1.22574 0.93944 1.02045 1.00136 1.20734 0.97765 0.92139 0.84416 1.44172 0.98653 1.85613 1.02667 1.19178 1.03153 1.26414 0.89204 0.91255 1.25100 1.00441 0.96331 0.97795 1.70032 1.21692 1.26081 1.36771 0.86316 0.80723 0.77286 0.82676 1.21596 1.21869 1.20441 1.20358 0.86358 0.93769 0.93116 0.95507 1.21787 0.97499 1.02289 0.97664 1.22378 0.98312 1.01631 0.95017 1.21394 1.07832 0.97703 0.93655 1.20382 1.06093 0.92480 0.89055 1.20259 1.07198 0.99081 0.85196 1.23117 0.93328 1.03545 0.99994 1.23108 0.97677 0.99122 1.00030 0.91223 0.91682 0.90063 0.88330 0.87880 0.76565 0.92669 0.92821 0.89429 0.96086 0.93701 0.92782 0.91890 0.94335 0.92679 0.91796 0.82361 0.86799 0.87845 0.88020 0.88050 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.16 0.38 -0.46 16 2 C 0.11 0.68 6.74 -4.04 -0.03 0.65 16 3 N -0.28 -2.86 3.30 -57.10 -0.19 -3.04 16 4 N -0.26 -3.44 11.67 33.42 0.39 -3.05 16 5 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 6 C 0.60 10.54 7.79 -12.39 -0.10 10.44 16 7 O -0.53 -11.07 16.59 5.31 0.09 -10.99 16 8 N -0.71 -11.72 5.07 -54.76 -0.28 -12.00 16 9 C 0.15 2.83 2.42 -67.89 -0.16 2.66 16 10 H 0.08 1.71 7.57 -51.93 -0.39 1.31 16 11 C -0.15 -3.08 5.65 -26.61 -0.15 -3.23 16 12 C 0.18 4.38 5.29 -3.71 -0.02 4.36 16 13 N -0.59 -14.74 2.99 -164.77 -0.49 -15.23 16 14 C -0.25 -6.77 8.58 -15.06 -0.13 -6.89 16 15 H 0.07 1.83 6.22 -52.49 -0.33 1.50 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.60 11.25 55.49 0.62 -25.98 16 18 Si 0.90 21.92 29.58 -169.99 -5.03 16.89 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.17 3.60 3.50 -67.60 -0.24 3.37 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 24 C -0.13 -2.55 7.95 37.16 0.30 -2.26 16 25 C -0.13 -2.37 4.84 -26.61 -0.13 -2.50 16 26 C -0.18 -2.30 9.86 -39.36 -0.39 -2.69 16 27 C 0.04 0.45 6.60 -82.21 -0.54 -0.10 16 28 C -0.10 -0.66 5.94 -91.78 -0.54 -1.20 16 29 C -0.16 -0.98 10.05 -26.70 -0.27 -1.25 16 30 C -0.16 -0.96 10.06 -26.70 -0.27 -1.23 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.10 0.35 7.12 -51.93 -0.37 -0.02 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.40 5.83 8.33 -40.82 -0.34 5.49 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16 43 H 0.06 1.28 7.66 -51.93 -0.40 0.89 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.16 1.95 8.06 -52.49 -0.42 1.52 16 48 H 0.11 0.53 7.17 -51.93 -0.37 0.16 16 49 H 0.10 0.73 7.95 -51.93 -0.41 0.32 16 50 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.10 0.71 7.97 -51.93 -0.41 0.29 16 LS Contribution 415.06 15.07 6.25 6.25 Total: -1.00 -33.38 415.06 -10.38 -43.76 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.78 Total: 4.43 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.96 Total: -1.05 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.06 Total: -59.30 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.38 -10.38 -43.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947379134.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.185 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds