Wall clock time and date at job start Wed Apr 1 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47288 * 2 1 4 4 C 1.35405 * 126.43896 * 265.16121 * 3 2 1 5 5 C 1.35560 * 107.16670 * 180.22118 * 4 3 2 6 6 N 1.33102 * 108.34208 * 359.77389 * 5 4 3 7 7 C 1.31608 * 109.10212 * 359.97438 * 6 5 4 8 8 C 1.47404 * 125.86902 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00362 * 174.44575 * 8 7 6 10 10 N 1.34782 * 120.00012 * 354.44382 * 8 7 6 11 11 C 1.46927 * 120.62740 * 352.79156 * 10 8 7 12 12 C 1.53192 * 108.77703 * 233.58357 * 11 10 8 13 13 C 1.53042 * 109.31221 * 305.36748 * 12 11 10 14 14 C 1.53039 * 109.53730 * 61.36232 * 13 12 11 15 15 H 1.09006 * 109.52256 * 58.60360 * 14 13 12 16 16 C 1.53002 * 109.49819 * 178.68025 * 14 13 12 17 17 H 1.09001 * 110.77760 * 56.60064 * 16 14 13 18 18 C 1.55152 * 110.71941 * 179.84013 * 16 14 13 19 19 C 1.54906 * 101.58010 * 153.86771 * 18 16 14 20 20 N 1.47422 * 104.83393 * 322.99116 * 19 18 16 21 21 C 1.36937 * 125.64983 * 204.09461 * 20 19 18 22 22 H 1.08000 * 120.00216 * 172.32276 * 21 20 19 23 23 C 1.38809 * 119.99884 * 352.04709 * 21 20 19 24 24 N 1.31618 * 120.00247 * 347.08288 * 23 21 20 25 25 Si 1.86804 * 119.99967 * 167.08491 * 23 21 20 26 26 H 1.48494 * 109.47141 * 94.98980 * 25 23 21 27 27 H 1.48504 * 109.47141 * 214.98714 * 25 23 21 28 28 H 1.48494 * 109.47211 * 334.98718 * 25 23 21 29 29 C 1.47024 * 108.70256 * 24.35374 * 20 19 18 30 30 C 1.46921 * 120.63284 * 172.76740 * 10 8 7 31 31 H 1.09003 * 109.47221 * 300.00465 * 1 2 3 32 32 H 1.09006 * 109.46681 * 59.99820 * 1 2 3 33 33 H 1.08998 * 109.47134 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47221 * 239.99535 * 2 1 3 35 35 H 1.09007 * 109.46442 * 119.99687 * 2 1 3 36 36 H 1.08010 * 126.41632 * 0.02562 * 4 3 2 37 37 H 1.07994 * 125.83301 * 179.77125 * 5 4 3 38 38 H 1.08998 * 109.58633 * 353.37790 * 11 10 8 39 39 H 1.09005 * 109.58188 * 113.65237 * 11 10 8 40 40 H 1.08999 * 109.49596 * 65.31760 * 12 11 10 41 41 H 1.08996 * 109.49930 * 185.38617 * 12 11 10 42 42 H 1.08995 * 109.46109 * 301.34560 * 13 12 11 43 43 H 1.08994 * 109.45879 * 181.38195 * 13 12 11 44 44 H 1.08993 * 111.00916 * 35.79522 * 18 16 14 45 45 H 1.09004 * 111.03438 * 271.95204 * 18 16 14 46 46 H 1.09008 * 110.36768 * 204.14798 * 19 18 16 47 47 H 1.09000 * 110.46245 * 81.87924 * 19 18 16 48 48 H 0.96997 * 120.00230 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.87654 * 118.13290 * 29 20 19 50 50 H 1.08994 * 109.88350 * 239.30051 * 29 20 19 51 51 H 1.09004 * 109.58612 * 6.62802 * 30 10 8 52 52 H 1.09004 * 109.58831 * 246.20150 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3731 2.1088 -1.0854 5 6 2.7688 3.3261 -0.6392 6 7 2.6539 3.3438 0.6867 7 6 2.1982 2.1787 1.0952 8 6 1.9337 1.7970 2.4941 9 8 1.4171 0.7250 2.7447 10 7 2.2645 2.6360 3.4957 11 6 3.0293 3.8609 3.2243 12 6 4.2624 3.8838 4.1330 13 6 3.8204 3.7285 5.5899 14 6 3.1129 2.3835 5.7696 15 1 3.7882 1.5760 5.4865 16 6 2.7006 2.2148 7.2333 17 1 2.0708 3.0440 7.5557 18 6 1.9758 0.8597 7.4468 19 6 2.2650 0.5848 8.9436 20 7 3.6393 1.0733 9.1584 21 6 4.4913 0.6517 10.1440 22 1 5.5205 0.9788 10.1446 23 6 4.0306 -0.1917 11.1457 24 7 2.7379 -0.3839 11.3014 25 14 5.2454 -1.0539 12.2728 26 1 5.4210 -0.2571 13.5135 27 1 4.7282 -2.4021 12.6194 28 1 6.5528 -1.1880 11.5815 29 6 3.9414 2.0927 8.1429 30 6 1.8667 2.3436 4.8795 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.3487 1.7797 -2.1139 37 1 3.1178 4.1422 -1.2544 38 1 3.3440 3.8715 2.1808 39 1 2.4070 4.7326 3.4271 40 1 4.9271 3.0625 3.8649 41 1 4.7871 4.8313 4.0105 42 1 3.1363 4.5362 5.8499 43 1 4.6939 3.7691 6.2406 44 1 2.4072 0.0823 6.8164 45 1 0.9050 0.9561 7.2671 46 1 2.2053 -0.4836 9.1516 47 1 1.5647 1.1329 9.5740 48 1 2.4160 -0.9735 12.0011 49 1 4.1447 3.0483 8.6262 50 1 4.8031 1.7831 7.5517 51 1 1.4145 1.3530 4.9281 52 1 1.1506 3.0916 5.2197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961160446.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:51 Heat of formation + Delta-G solvation = 56.987565 kcal Electronic energy + Delta-G solvation = -31388.695761 eV Core-core repulsion = 27390.038809 eV Total energy + Delta-G solvation = -3998.656952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.67065 -40.02828 -38.20487 -36.72681 -35.36857 -33.56570 -32.25180 -31.29159 -30.62695 -29.92197 -28.81639 -27.24591 -25.73516 -24.59692 -24.18604 -22.79510 -22.64720 -21.74341 -20.56120 -19.95902 -19.34404 -19.14593 -17.46795 -16.82184 -16.66371 -16.25587 -15.83638 -15.30163 -14.93764 -14.65935 -14.42759 -14.35725 -14.18787 -14.12060 -13.87481 -13.71918 -13.35244 -13.13733 -12.95510 -12.89850 -12.43969 -12.35735 -12.08230 -11.90634 -11.66618 -11.56952 -11.18568 -11.14780 -10.93066 -10.83333 -10.75105 -10.50608 -10.37463 -10.16714 -10.03567 -9.96967 -9.85616 -9.68333 -9.57377 -9.43086 -8.96125 -8.57671 -8.48039 -6.72796 -5.68688 -2.98328 1.10671 2.11150 2.31620 2.99804 3.18417 3.43378 3.49267 3.51789 3.99097 4.27773 4.34139 4.55671 4.61958 4.81393 4.88381 4.90498 4.99391 5.02765 5.08350 5.12033 5.26862 5.35342 5.36027 5.47766 5.51830 5.58139 5.65180 5.71481 5.74785 5.79520 5.84493 5.88710 6.00750 6.04801 6.09499 6.13107 6.15873 6.30704 6.37898 6.43433 6.51197 6.54129 6.67710 6.70806 6.74999 6.85545 7.07654 7.22709 7.49207 7.60095 7.66131 7.85608 7.97964 8.33583 9.26571 9.89623 10.58010 11.44818 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002348 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.611010 B =11923.548996 C =12709.479710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.412 5.412 4 C -0.031 4.031 5 C -0.031 4.031 6 N -0.444 5.444 7 C 0.151 3.849 8 C 0.601 3.399 9 O -0.540 6.540 10 N -0.582 5.582 11 C 0.072 3.928 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.085 4.085 15 H 0.074 0.926 16 C -0.091 4.091 17 H 0.071 0.929 18 C -0.141 4.141 19 C 0.172 3.828 20 N -0.604 5.604 21 C -0.227 4.227 22 H 0.075 0.925 23 C -0.009 4.009 24 N -0.917 5.917 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.145 3.855 30 C 0.118 3.882 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.182 0.818 37 H 0.178 0.822 38 H 0.142 0.858 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.252 0.748 49 H 0.019 0.981 50 H 0.022 0.978 51 H 0.096 0.904 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 7.143 -28.157 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.092 5.092 4 C -0.170 4.170 5 C -0.184 4.184 6 N -0.166 5.166 7 C -0.108 4.108 8 C 0.387 3.613 9 O -0.417 6.417 10 N -0.313 5.313 11 C -0.050 4.050 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.105 4.105 15 H 0.093 0.907 16 C -0.111 4.111 17 H 0.090 0.910 18 C -0.180 4.180 19 C 0.048 3.952 20 N -0.330 5.330 21 C -0.355 4.355 22 H 0.093 0.907 23 C -0.205 4.205 24 N -0.565 5.565 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.019 3.981 30 C -0.003 4.003 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.199 0.801 37 H 0.195 0.805 38 H 0.159 0.841 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.042 0.958 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.040 0.960 51 H 0.115 0.885 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.146 6.889 -27.254 28.286 hybrid contribution 0.455 -0.945 0.093 1.053 sum -2.691 5.944 -27.161 27.934 Atomic orbital electron populations 1.22069 0.93345 1.03572 1.03071 1.22138 0.96534 0.78544 1.05342 1.45293 1.44901 1.12906 1.06099 1.22912 1.06936 0.94000 0.93104 1.22531 1.07009 0.97562 0.91250 1.69928 1.16187 1.18560 1.11906 1.22724 1.09422 0.88409 0.90257 1.16541 0.79065 0.83787 0.81957 1.90810 1.45322 1.21961 1.83635 1.47780 1.53453 1.23233 1.06875 1.22821 0.92245 0.85221 1.04708 1.21921 0.97488 1.02168 0.95493 1.21634 1.00814 0.97101 0.95979 1.21486 0.96240 0.98062 0.94669 0.90739 1.22119 0.98097 0.98391 0.92471 0.91020 1.23049 0.98421 0.95876 1.00650 1.21379 0.85675 0.99827 0.88369 1.44525 1.13067 1.43016 1.32438 1.19015 0.91189 1.23783 1.01554 0.90713 1.24779 0.95947 1.01605 0.98216 1.69988 1.11239 1.40724 1.34511 0.86173 0.80294 0.79235 0.80532 1.21712 1.21638 1.20654 1.21273 0.94282 0.92247 0.90320 1.21832 0.96990 1.03080 0.78434 0.91049 0.92380 0.90229 0.88930 0.87246 0.80123 0.80500 0.84109 0.91740 0.91937 0.90842 0.91861 0.91176 0.92183 0.92357 0.91581 0.95768 0.93805 0.96354 0.96042 0.88549 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.17 37.16 0.38 -0.82 16 2 C 0.10 0.74 6.14 -4.04 -0.02 0.71 16 3 N -0.41 -3.90 2.76 -114.58 -0.32 -4.22 16 4 C -0.03 -0.22 11.53 -16.93 -0.20 -0.42 16 5 C -0.03 -0.26 11.85 -17.96 -0.21 -0.47 16 6 N -0.44 -4.92 7.63 -11.26 -0.09 -5.01 16 7 C 0.15 1.82 7.52 -154.53 -1.16 0.66 16 8 C 0.60 8.37 7.67 -12.53 -0.10 8.27 16 9 O -0.54 -8.48 13.69 5.27 0.07 -8.41 16 10 N -0.58 -7.63 2.97 -174.04 -0.52 -8.15 16 11 C 0.07 0.81 6.10 -3.71 -0.02 0.79 16 12 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 13 C -0.12 -1.46 5.03 -26.69 -0.13 -1.60 16 14 C -0.09 -1.23 1.74 -90.50 -0.16 -1.39 16 15 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 16 C -0.09 -1.59 2.48 -88.78 -0.22 -1.81 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -2.73 5.49 -24.59 -0.13 -2.86 16 19 C 0.17 4.31 5.44 -2.53 -0.01 4.29 16 20 N -0.60 -15.99 3.39 -170.07 -0.58 -16.57 16 21 C -0.23 -6.54 10.23 -15.06 -0.15 -6.69 16 22 H 0.08 2.09 7.86 -52.49 -0.41 1.68 16 23 C -0.01 -0.26 5.37 -17.43 -0.09 -0.36 16 24 N -0.92 -27.69 10.74 55.49 0.60 -27.09 16 25 Si 0.91 22.59 29.57 -169.99 -5.03 17.56 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.14 3.09 5.99 -3.06 -0.02 3.07 16 30 C 0.12 1.62 5.39 -3.71 -0.02 1.60 16 31 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.44 8.13 -51.93 -0.42 0.01 16 35 H 0.11 1.05 6.78 -51.92 -0.35 0.70 16 36 H 0.18 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.14 1.60 4.12 -63.58 -0.26 1.34 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.92 7.46 -51.93 -0.39 0.53 16 44 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.84 6.91 -51.92 -0.36 1.48 16 47 H 0.02 0.65 8.09 -51.93 -0.42 0.23 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.02 0.46 7.76 -51.93 -0.40 0.06 16 51 H 0.10 1.47 6.36 -51.93 -0.33 1.14 16 52 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -33.82 399.30 -11.07 -44.89 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.79 Total: -0.38 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.44 Total: 1.36 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.90 Total: -61.04 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.82 -11.07 -44.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961160446.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.881 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds