Wall clock time and date at job start Wed Apr 1 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47145 * 2 1 4 4 C 1.35846 * 126.13580 * 89.97861 * 3 2 1 5 5 N 1.30167 * 109.00528 * 180.02562 * 4 3 2 6 6 C 1.35759 * 108.86471 * 0.02562 * 5 4 3 7 7 C 1.47331 * 126.23452 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99824 * 173.01150 * 7 6 5 9 9 N 1.34776 * 119.99967 * 352.73510 * 7 6 5 10 10 C 1.46924 * 120.63030 * 352.80032 * 9 7 6 11 11 C 1.52770 * 109.00748 * 233.58013 * 10 9 7 12 12 C 1.53034 * 109.38081 * 305.58935 * 11 10 9 13 13 C 1.53038 * 109.54204 * 61.23590 * 12 11 10 14 14 H 1.09001 * 109.52040 * 58.60578 * 13 12 11 15 15 C 1.53003 * 109.49781 * 178.68116 * 13 12 11 16 16 H 1.08994 * 110.63926 * 62.98366 * 15 13 12 17 17 C 1.55156 * 110.71986 * 299.83969 * 15 13 12 18 18 C 1.54915 * 101.58096 * 206.13481 * 17 15 13 19 19 N 1.47424 * 104.82966 * 37.00803 * 18 17 15 20 20 C 1.36940 * 125.64820 * 155.90415 * 19 18 17 21 21 H 1.07998 * 120.00350 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99661 * 359.97438 * 20 19 18 23 23 N 1.31617 * 120.00348 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00009 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46855 * 60.00146 * 24 22 20 26 26 H 1.48496 * 109.47266 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46849 * 300.00074 * 24 22 20 28 28 C 1.47022 * 108.70791 * 335.87472 * 19 18 17 29 29 C 1.46923 * 120.63142 * 173.07118 * 9 7 6 30 30 C 1.35377 * 126.13326 * 270.27081 * 3 2 1 31 31 H 1.09002 * 109.47294 * 299.99849 * 1 2 3 32 32 H 1.08997 * 109.47404 * 60.00002 * 1 2 3 33 33 H 1.09001 * 109.47069 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47039 * 239.99675 * 2 1 3 35 35 H 1.09001 * 109.47109 * 120.00401 * 2 1 3 36 36 H 1.08007 * 125.49662 * 0.02562 * 4 3 2 37 37 H 1.08998 * 109.58804 * 353.41257 * 10 9 7 38 38 H 1.08997 * 109.59445 * 113.84020 * 10 9 7 39 39 H 1.08998 * 109.56056 * 185.55027 * 11 10 9 40 40 H 1.09000 * 109.35325 * 65.49647 * 11 10 9 41 41 H 1.09003 * 109.45931 * 301.21845 * 12 11 10 42 42 H 1.09000 * 109.44807 * 181.25455 * 12 11 10 43 43 H 1.09001 * 111.00667 * 324.20529 * 17 15 13 44 44 H 1.08997 * 111.00482 * 88.02717 * 17 15 13 45 45 H 1.08998 * 110.36834 * 155.84779 * 18 17 15 46 46 H 1.08997 * 110.36510 * 278.17682 * 18 17 15 47 47 H 0.96997 * 120.00455 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.88421 * 241.64129 * 28 19 18 49 49 H 1.09000 * 109.88209 * 120.47258 * 28 19 18 50 50 H 1.08998 * 109.59152 * 246.15606 * 29 9 7 51 51 H 1.09004 * 109.58775 * 6.58822 * 29 9 7 52 52 H 1.07992 * 126.56931 * 359.97313 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1366 1.0971 5 7 2.6992 3.3095 0.7137 6 6 2.7125 3.3484 -0.6433 7 6 3.1162 4.4935 -1.4777 8 8 3.2064 4.3651 -2.6838 9 7 3.3801 5.6847 -0.9052 10 6 3.1196 5.9023 0.5243 11 6 2.2400 7.1407 0.6869 12 6 2.8982 8.3276 -0.0202 13 6 3.0344 8.0223 -1.5136 14 1 2.0494 7.8237 -1.9361 15 6 3.6625 9.2225 -2.2250 16 1 4.6711 9.4043 -1.8540 17 6 2.7786 10.4862 -2.0541 18 6 3.1606 11.3054 -3.3122 19 7 3.3428 10.3008 -4.3757 20 6 3.2279 10.5323 -5.7204 21 1 3.3815 9.7260 -6.4223 22 6 2.9141 11.8035 -6.1815 23 7 2.7264 12.7861 -5.3261 24 14 2.7581 12.1196 -8.0160 25 1 1.6854 11.2596 -8.5770 26 1 2.4194 13.5471 -8.2452 27 1 4.0462 11.8036 -8.6839 28 6 3.6689 9.0092 -3.7534 29 6 3.9282 6.7922 -1.6999 30 6 2.2795 2.1355 -1.0934 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.1715 1.8157 2.1222 37 1 2.6065 5.0344 0.9385 38 1 4.0628 6.0562 1.0484 39 1 2.1222 7.3681 1.7464 40 1 1.2624 6.9500 0.2442 41 1 3.8861 8.5020 0.4063 42 1 2.2826 9.2170 0.1140 43 1 1.7199 10.2267 -2.0635 44 1 3.0387 11.0246 -1.1428 45 1 2.3577 11.9943 -3.5746 46 1 4.0891 11.8505 -3.1424 47 1 2.5075 13.6744 -5.6483 48 1 4.6562 8.6803 -4.0777 49 1 2.9198 8.2662 -4.0272 50 1 4.9387 7.0202 -1.3610 51 1 3.9484 6.5114 -2.7530 52 1 2.1683 1.8343 -2.1244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961278428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:17 Heat of formation + Delta-G solvation = 55.652073 kcal Electronic energy + Delta-G solvation = -30868.595952 eV Core-core repulsion = 26869.881089 eV Total energy + Delta-G solvation = -3998.714863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57891 -39.88299 -38.05120 -36.47057 -35.53295 -33.46211 -32.06957 -31.14191 -30.73268 -29.94054 -28.88499 -26.94060 -25.78037 -24.50063 -24.31080 -22.81384 -22.47420 -21.33116 -20.62126 -19.84000 -19.23303 -19.17811 -17.58603 -16.76520 -16.54253 -16.04502 -15.81237 -15.23535 -14.95392 -14.65519 -14.50091 -14.36585 -14.21605 -14.05948 -13.73316 -13.69321 -13.30668 -13.10611 -12.94834 -12.75171 -12.65436 -12.36704 -12.11134 -11.99599 -11.64614 -11.44665 -11.08974 -10.97518 -10.82527 -10.78294 -10.66736 -10.51366 -10.25217 -10.09945 -10.03027 -9.91509 -9.68850 -9.61611 -9.45940 -9.29208 -8.96516 -8.52583 -8.36025 -6.68515 -5.52830 -2.93482 1.37557 2.12146 2.20421 3.15831 3.48982 3.49192 3.52219 3.54175 3.99336 4.09375 4.28081 4.34891 4.54448 4.59773 4.72803 4.92998 4.95923 4.99310 5.10324 5.11889 5.20227 5.24502 5.40766 5.46380 5.58479 5.60739 5.67728 5.68799 5.76756 5.86427 5.90136 5.95663 6.01244 6.08230 6.17612 6.22644 6.26699 6.32715 6.46737 6.52005 6.59511 6.65137 6.75486 6.80442 6.89991 6.95595 7.16963 7.40664 7.63354 7.66074 7.76357 7.98843 8.32292 8.49915 9.35602 9.96832 10.63060 11.51023 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.002216 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.504090 B =12634.166354 C =13695.895359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.183 3.817 5 N -0.460 5.460 6 C -0.054 4.054 7 C 0.599 3.401 8 O -0.545 6.545 9 N -0.595 5.595 10 C 0.083 3.917 11 C -0.134 4.134 12 C -0.114 4.114 13 C -0.085 4.085 14 H 0.073 0.927 15 C -0.092 4.092 16 H 0.069 0.931 17 C -0.135 4.135 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.217 4.217 21 H 0.076 0.924 22 C -0.015 4.015 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.140 3.860 29 C 0.115 3.885 30 C 0.034 3.966 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.210 0.790 37 H 0.136 0.864 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.009 0.991 47 H 0.251 0.749 48 H 0.018 0.982 49 H 0.024 0.976 50 H 0.065 0.935 51 H 0.095 0.905 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -26.330 19.602 32.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.139 5.139 4 C -0.100 4.100 5 N -0.179 5.179 6 C -0.182 4.182 7 C 0.386 3.614 8 O -0.423 6.423 9 N -0.326 5.326 10 C -0.040 4.040 11 C -0.172 4.172 12 C -0.152 4.152 13 C -0.105 4.105 14 H 0.092 0.908 15 C -0.111 4.111 16 H 0.088 0.912 17 C -0.174 4.174 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.346 4.346 21 H 0.094 0.906 22 C -0.210 4.210 23 N -0.574 5.574 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.014 3.986 29 C -0.007 4.007 30 C -0.104 4.104 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.226 0.774 37 H 0.153 0.847 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.027 0.973 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.042 0.958 50 H 0.084 0.916 51 H 0.113 0.887 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.062 -25.703 19.318 32.299 hybrid contribution -0.213 -0.431 -1.300 1.386 sum -3.275 -26.135 18.019 31.913 Atomic orbital electron populations 1.22188 0.93680 1.03506 1.03616 1.21977 0.95945 0.79285 1.05161 1.45521 1.48443 1.13120 1.06819 1.25300 1.03388 0.87604 0.93661 1.70379 1.18870 1.18234 1.10443 1.20612 1.11802 0.95524 0.90309 1.16968 0.76841 0.81485 0.86088 1.90810 1.53942 1.83828 1.13674 1.47877 1.62834 1.11113 1.10754 1.22491 1.00097 1.01043 0.80356 1.21862 0.99405 0.95459 1.00470 1.21594 1.00886 0.97833 0.94891 1.21485 0.99603 0.93960 0.95415 0.90840 1.22138 0.98881 0.94231 0.95887 0.91224 1.23016 0.98570 0.96139 0.99680 1.21915 1.00319 0.91400 0.83699 1.44518 1.82065 1.04244 1.02282 1.19066 1.39653 0.94641 0.81213 0.90627 1.24776 1.02561 0.95758 0.97885 1.69801 1.55215 1.00911 1.31452 0.86158 0.77871 0.76825 0.84715 1.21237 1.21663 1.21296 1.21345 0.97084 0.89862 0.90295 1.21777 0.96158 0.85352 0.97403 1.22597 1.02830 0.91702 0.93295 0.91581 0.91532 0.90258 0.88615 0.88389 0.77364 0.84678 0.92345 0.91158 0.92061 0.92070 0.91391 0.92350 0.92630 0.87810 0.97286 0.93861 0.96367 0.95816 0.91634 0.88713 0.79571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.40 10.24 37.15 0.38 -0.02 16 2 C 0.10 0.23 6.84 -4.05 -0.03 0.20 16 3 N -0.46 -2.86 2.72 -118.37 -0.32 -3.19 16 4 C 0.18 1.26 12.55 -89.91 -1.13 0.13 16 5 N -0.46 -4.84 7.78 -11.03 -0.09 -4.93 16 6 C -0.05 -0.67 6.65 -83.09 -0.55 -1.23 16 7 C 0.60 9.41 7.67 -12.56 -0.10 9.32 16 8 O -0.54 -10.24 16.32 5.26 0.09 -10.16 16 9 N -0.59 -8.73 2.98 -174.33 -0.52 -9.25 16 10 C 0.08 1.00 6.06 -3.93 -0.02 0.98 16 11 C -0.13 -1.55 6.07 -26.83 -0.16 -1.71 16 12 C -0.11 -1.50 4.97 -26.69 -0.13 -1.63 16 13 C -0.09 -1.34 1.74 -90.50 -0.16 -1.50 16 14 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 15 C -0.09 -1.70 2.49 -88.78 -0.22 -1.92 16 16 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 17 C -0.14 -2.69 5.38 -24.58 -0.13 -2.83 16 18 C 0.15 3.88 5.89 -2.53 -0.01 3.87 16 19 N -0.61 -16.57 3.39 -170.07 -0.58 -17.14 16 20 C -0.22 -6.42 10.27 -15.06 -0.15 -6.58 16 21 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 23 N -0.92 -28.08 10.09 55.49 0.56 -27.52 16 24 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.14 3.18 6.10 -3.06 -0.02 3.17 16 29 C 0.12 1.80 5.49 -3.71 -0.02 1.77 16 30 C 0.03 0.33 11.27 -16.64 -0.19 0.14 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.21 0.57 8.06 -52.48 -0.42 0.14 16 37 H 0.14 1.60 4.12 -60.45 -0.25 1.35 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.90 7.20 -51.93 -0.37 0.52 16 43 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 44 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 45 H 0.10 2.97 5.87 -51.93 -0.30 2.66 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.02 0.56 7.77 -51.93 -0.40 0.15 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.09 1.69 6.55 -51.93 -0.34 1.35 16 52 H 0.19 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -36.23 403.12 -11.37 -47.60 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.82 Total: -1.20 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.75 Total: 1.63 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.95 Total: -62.03 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.23 -11.37 -47.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961278428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.250 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds