Wall clock time and date at job start Wed Apr 1 2020 05:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47129 * 2 1 4 4 C 1.35397 * 126.44188 * 265.00255 * 3 2 1 5 5 C 1.35562 * 107.16295 * 179.97438 * 4 3 2 6 6 N 1.33103 * 108.34879 * 359.77433 * 5 4 3 7 7 C 1.31616 * 109.09341 * 0.37085 * 6 5 4 8 8 C 1.47407 * 125.85807 * 179.89148 * 7 6 5 9 9 O 1.21612 * 119.99625 * 186.25590 * 8 7 6 10 10 N 1.34771 * 120.00422 * 6.25657 * 8 7 6 11 11 C 1.46925 * 120.63136 * 6.37617 * 10 8 7 12 12 C 1.53186 * 108.77953 * 126.36702 * 11 10 8 13 13 C 1.53036 * 109.31149 * 54.63427 * 12 11 10 14 14 C 1.53040 * 109.54073 * 298.63477 * 13 12 11 15 15 H 1.08996 * 109.49385 * 301.38295 * 14 13 12 16 16 C 1.53001 * 109.49704 * 181.31676 * 14 13 12 17 17 H 1.08994 * 109.87678 * 306.15951 * 16 14 13 18 18 C 1.54328 * 109.87668 * 184.98750 * 16 14 13 19 19 C 1.55157 * 102.93919 * 218.38951 * 18 16 14 20 20 C 1.54690 * 101.67893 * 35.33723 * 19 18 16 21 21 N 1.47020 * 109.88277 * 67.17970 * 16 14 13 22 22 C 1.36929 * 125.64899 * 298.31976 * 21 16 14 23 23 H 1.08002 * 120.00342 * 135.54547 * 22 21 16 24 24 C 1.38809 * 120.00063 * 315.53970 * 22 21 16 25 25 N 1.31621 * 120.00690 * 175.52442 * 24 22 21 26 26 Si 1.86800 * 119.99957 * 355.52544 * 24 22 21 27 27 H 1.48498 * 109.47318 * 84.10242 * 26 24 22 28 28 H 1.48497 * 109.47169 * 324.10246 * 26 24 22 29 29 H 1.48501 * 109.47324 * 204.10199 * 26 24 22 30 30 C 1.46925 * 120.63410 * 186.35003 * 10 8 7 31 31 H 1.09005 * 109.47539 * 299.99535 * 1 2 3 32 32 H 1.08994 * 109.47189 * 60.00253 * 1 2 3 33 33 H 1.09006 * 109.47062 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47469 * 240.00033 * 2 1 3 35 35 H 1.09003 * 109.47227 * 119.99604 * 2 1 3 36 36 H 1.08003 * 126.41790 * 0.02562 * 4 3 2 37 37 H 1.08003 * 125.82371 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.58349 * 6.57572 * 11 10 8 39 39 H 1.09001 * 109.58532 * 246.15916 * 11 10 8 40 40 H 1.08999 * 109.49896 * 294.68551 * 12 11 10 41 41 H 1.09001 * 109.52490 * 174.60121 * 12 11 10 42 42 H 1.09004 * 109.46181 * 178.61406 * 13 12 11 43 43 H 1.08998 * 109.45090 * 58.65368 * 13 12 11 44 44 H 1.08997 * 110.72303 * 336.74894 * 18 16 14 45 45 H 1.08996 * 110.71786 * 100.02985 * 18 16 14 46 46 H 1.08996 * 111.00646 * 153.57649 * 19 18 16 47 47 H 1.09005 * 111.00709 * 277.42764 * 19 18 16 48 48 H 1.09001 * 110.39544 * 204.36853 * 20 19 18 49 49 H 1.08995 * 110.23879 * 82.11199 * 20 19 18 50 50 H 0.96993 * 120.00545 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.58905 * 113.84143 * 30 10 8 52 52 H 1.09002 * 109.58230 * 353.41762 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3758 2.1079 -1.0851 5 6 2.7651 3.3275 -0.6392 6 7 2.6436 3.3475 0.6861 7 6 2.1979 2.1787 1.0953 8 6 1.9323 1.7974 2.4942 9 8 1.6297 0.6510 2.7650 10 7 2.0248 2.7190 3.4731 11 6 2.2517 4.1342 3.1499 12 6 1.1641 4.9750 3.8257 13 6 1.1454 4.6679 5.3248 14 6 0.8163 3.1889 5.5403 15 1 -0.1507 2.9623 5.0913 16 6 0.7656 2.8902 7.0400 17 1 1.6916 3.2152 7.5141 18 6 0.5584 1.3779 7.2672 19 6 -0.4030 1.3379 8.4844 20 6 -1.2904 2.5777 8.2233 21 7 -0.3784 3.5840 7.6496 22 6 -0.5633 4.9403 7.6839 23 1 -1.5323 5.3592 7.4561 24 6 0.4948 5.7769 8.0115 25 7 0.3418 7.0831 7.9590 26 14 2.1361 5.0489 8.5270 27 1 2.9328 4.7188 7.3181 28 1 1.9032 3.8144 9.3187 29 1 2.8771 6.0349 9.3541 30 6 1.9001 2.3279 4.8839 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.3541 1.7779 -2.1132 37 1 3.1106 4.1449 -1.2548 38 1 2.2039 4.2745 2.0700 39 1 3.2313 4.4404 3.5171 40 1 0.1941 4.7313 3.3924 41 1 1.3749 6.0335 3.6738 42 1 0.3889 5.2829 5.8122 43 1 2.1233 4.8884 5.7527 44 1 0.0954 0.9167 6.3948 45 1 1.5037 0.8908 7.5063 46 1 -0.9963 0.4235 8.4837 47 1 0.1463 1.4447 9.4198 48 1 -1.7181 2.9422 9.1573 49 1 -2.0805 2.3332 7.5134 50 1 1.0812 7.6677 8.1876 51 1 2.8509 2.4867 5.3925 52 1 1.6201 1.2764 4.9481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963299593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:18 Heat of formation + Delta-G solvation = 52.231992 kcal Electronic energy + Delta-G solvation = -32766.580648 eV Core-core repulsion = 28767.717479 eV Total energy + Delta-G solvation = -3998.863169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.38226 -41.19625 -39.79482 -37.98446 -36.05063 -34.83106 -34.04045 -32.68039 -31.75120 -31.41775 -30.65181 -28.42739 -26.78455 -26.35417 -24.91444 -24.10398 -23.57274 -22.46645 -21.76304 -21.67689 -21.29619 -20.11545 -18.78037 -18.22099 -17.74240 -17.47618 -16.95929 -16.71106 -16.45027 -15.75047 -15.53717 -15.49554 -15.35358 -15.16647 -14.96372 -14.81871 -14.69290 -14.42436 -14.15262 -14.07002 -13.68188 -13.64990 -13.60350 -13.32178 -13.02006 -12.92636 -12.87090 -12.44904 -12.36498 -12.22259 -12.08451 -11.96325 -11.88159 -11.83959 -11.52853 -11.33672 -11.18378 -10.91059 -10.89634 -10.51502 -10.28884 -9.81173 -9.44252 -8.59170 -8.16065 -5.65715 0.29247 1.29137 1.35555 1.37535 1.46583 1.61846 2.14141 2.30608 2.40481 3.12582 3.13503 3.34531 3.67882 3.74539 3.80585 3.90379 4.03526 4.08114 4.11056 4.15637 4.17452 4.24306 4.34151 4.37737 4.39893 4.46781 4.51611 4.54054 4.58892 4.69036 4.76677 4.79010 4.83316 4.86772 4.97824 4.98138 4.99649 5.11241 5.13186 5.13846 5.22720 5.29322 5.32933 5.43057 5.48568 5.55302 5.75845 5.82182 5.95813 6.01246 6.20805 6.24752 6.70868 6.89080 7.02271 7.54531 8.26905 9.01138 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.003625 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.240273 B = 7722.227007 C = 8782.459476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.091 3.909 3 N -0.411 5.411 4 C -0.004 4.004 5 C -0.049 4.049 6 N -0.461 5.461 7 C 0.108 3.892 8 C 0.598 3.402 9 O -0.567 6.567 10 N -0.584 5.584 11 C 0.081 3.919 12 C -0.121 4.121 13 C -0.138 4.138 14 C -0.083 4.083 15 H 0.053 0.947 16 C 0.142 3.858 17 H 0.020 0.980 18 C -0.123 4.123 19 C -0.123 4.123 20 C 0.122 3.878 21 N -0.620 5.620 22 C -0.234 4.234 23 H 0.038 0.962 24 C 0.010 3.990 25 N -0.947 5.947 26 Si 0.939 3.061 27 H -0.255 1.255 28 H -0.268 1.268 29 H -0.317 1.317 30 C 0.122 3.878 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.230 0.770 37 H 0.205 0.795 38 H 0.152 0.848 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.029 0.971 50 H 0.263 0.737 51 H 0.066 0.934 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -15.706 -19.880 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.030 4.030 3 N -0.091 5.091 4 C -0.143 4.143 5 C -0.201 4.201 6 N -0.184 5.184 7 C -0.149 4.149 8 C 0.386 3.614 9 O -0.447 6.447 10 N -0.314 5.314 11 C -0.041 4.041 12 C -0.160 4.160 13 C -0.175 4.175 14 C -0.104 4.104 15 H 0.071 0.929 16 C 0.036 3.964 17 H 0.037 0.963 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.003 4.003 21 N -0.346 5.346 22 C -0.363 4.363 23 H 0.055 0.945 24 C -0.188 4.188 25 N -0.591 5.591 26 Si 0.770 3.230 27 H -0.181 1.181 28 H -0.194 1.194 29 H -0.246 1.246 30 C -0.001 4.001 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.152 0.848 35 H 0.109 0.891 36 H 0.246 0.754 37 H 0.221 0.779 38 H 0.168 0.832 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.047 0.953 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.342 -15.622 -19.104 25.249 hybrid contribution 0.425 0.167 0.300 0.546 sum 5.767 -15.455 -18.804 25.014 Atomic orbital electron populations 1.22028 0.93449 1.04284 1.01766 1.22338 0.96346 0.77811 1.06477 1.45506 1.44244 1.13539 1.05799 1.23698 1.03438 0.92948 0.94195 1.23158 1.07329 0.99272 0.90326 1.69785 1.16446 1.18150 1.14038 1.22257 1.13070 0.89528 0.90058 1.16822 0.77169 0.84567 0.82882 1.90721 1.50827 1.19751 1.83379 1.47827 1.68892 1.08846 1.05850 1.22855 0.97468 0.77764 1.05983 1.21822 0.98691 0.99980 0.95475 1.22047 1.02076 0.97232 0.96114 1.21669 0.97263 0.95178 0.96258 0.92857 1.21392 0.90944 0.93095 0.90987 0.96317 1.22651 1.00713 0.93655 0.99069 1.22676 0.97819 0.98055 0.97562 1.21844 0.93161 0.89344 0.95919 1.44749 1.24234 1.01405 1.64229 1.18085 0.96912 0.80290 1.41027 0.94482 1.25943 1.01365 0.94904 0.96567 1.69862 1.33152 1.03461 1.52635 0.86197 0.81378 0.76857 0.78596 1.18142 1.19368 1.24593 1.21755 0.98806 1.00271 0.79253 0.95078 0.90991 0.88412 0.84803 0.89072 0.75353 0.77860 0.83151 0.92032 0.93161 0.90773 0.89724 0.94080 0.90197 0.89637 0.88214 0.91920 0.94171 0.95345 0.92739 0.91542 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.24 71.98 0.74 -1.64 16 2 C 0.09 1.36 6.26 86.38 0.54 1.90 16 3 N -0.41 -8.10 2.76 -516.45 -1.42 -9.53 16 4 C 0.00 -0.05 11.53 83.52 0.96 0.91 16 5 C -0.05 -0.87 11.85 83.88 0.99 0.13 16 6 N -0.46 -12.12 7.63 -189.52 -1.45 -13.57 16 7 C 0.11 2.98 7.52 136.28 1.02 4.01 16 8 C 0.60 19.63 7.67 86.66 0.66 20.29 16 9 O -0.57 -19.63 14.20 -4.07 -0.06 -19.69 16 10 N -0.58 -19.87 2.97 -822.82 -2.45 -22.32 16 11 C 0.08 2.68 6.11 86.36 0.53 3.21 16 12 C -0.12 -4.53 6.08 30.67 0.19 -4.34 16 13 C -0.14 -6.06 3.69 30.62 0.11 -5.94 16 14 C -0.08 -3.33 1.97 -10.72 -0.02 -3.35 16 15 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 16 C 0.14 5.91 1.97 45.34 0.09 6.00 16 17 H 0.02 0.87 3.32 -2.39 -0.01 0.87 16 18 C -0.12 -4.01 5.42 31.78 0.17 -3.84 16 19 C -0.12 -3.88 7.07 31.91 0.23 -3.65 16 20 C 0.12 4.87 7.22 86.78 0.63 5.50 16 21 N -0.62 -29.74 2.62 -668.70 -1.75 -31.49 16 22 C -0.23 -13.28 8.31 84.03 0.70 -12.58 16 23 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 24 C 0.01 0.57 3.94 84.86 0.33 0.90 16 25 N -0.95 -58.28 13.97 21.65 0.30 -57.98 16 26 Si 0.94 47.01 23.04 68.60 1.58 48.59 16 27 H -0.26 -11.99 5.36 99.48 0.53 -11.46 16 28 H -0.27 -13.08 6.90 99.48 0.69 -12.40 16 29 H -0.32 -16.22 7.11 99.48 0.71 -15.51 16 30 C 0.12 4.26 5.28 86.36 0.46 4.71 16 31 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.13 0.87 8.13 -2.39 -0.02 0.85 16 35 H 0.09 1.80 6.51 -2.39 -0.02 1.79 16 36 H 0.23 0.71 8.06 -2.91 -0.02 0.68 16 37 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.15 4.71 4.09 -27.96 -0.11 4.59 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.08 4.48 4.40 -2.38 -0.01 4.47 16 43 H 0.04 1.88 5.36 -2.39 -0.01 1.87 16 44 H 0.08 2.45 7.28 -2.39 -0.02 2.43 16 45 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.10 3.26 5.83 -2.39 -0.01 3.24 16 Total: -1.00 -73.53 381.93 3.71 -69.82 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.62 Total: 23.96 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 8.33 Total: 12.20 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -6.76 Total: -134.89 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.58 Total: 48.59 kcal Total: -73.53 3.71 -69.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963299593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.051 kcal (2) G-P(sol) polarization free energy of solvation -73.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds