Wall clock time and date at job start Wed Apr 1 2020 04:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47069 * 2 1 4 4 C 1.35043 * 124.88243 * 125.00536 * 3 2 1 5 5 C 1.35367 * 107.22489 * 179.97438 * 4 3 2 6 6 C 1.41499 * 105.50771 * 359.97438 * 5 4 3 7 7 C 1.47703 * 126.51901 * 179.97438 * 6 5 4 8 8 O 1.21567 * 120.00376 * 352.53433 * 7 6 5 9 9 N 1.34786 * 119.99950 * 172.52692 * 7 6 5 10 10 C 1.46921 * 120.62963 * 353.15920 * 9 7 6 11 11 C 1.53189 * 108.77454 * 233.62820 * 10 9 7 12 12 C 1.53038 * 109.31240 * 305.36366 * 11 10 9 13 13 C 1.53038 * 109.53527 * 61.36963 * 12 11 10 14 14 H 1.08991 * 109.50340 * 58.58450 * 13 12 11 15 15 C 1.53008 * 109.49899 * 178.68400 * 13 12 11 16 16 H 1.09002 * 109.86687 * 305.96665 * 15 13 12 17 17 C 1.54317 * 109.88485 * 184.79559 * 15 13 12 18 18 C 1.55154 * 102.94057 * 218.39006 * 17 15 13 19 19 C 1.54905 * 101.58456 * 35.49780 * 18 17 15 20 20 N 1.47024 * 109.88189 * 66.98224 * 15 13 12 21 21 C 1.36942 * 125.64779 * 298.32409 * 20 15 13 22 22 H 1.08000 * 119.99446 * 139.62072 * 21 20 15 23 23 C 1.38816 * 120.00014 * 319.61990 * 21 20 15 24 24 N 1.31617 * 119.99556 * 170.45822 * 23 21 20 25 25 Si 1.86798 * 120.00085 * 350.45754 * 23 21 20 26 26 H 1.48505 * 109.46779 * 91.12617 * 25 23 21 27 27 H 1.48501 * 109.47228 * 211.12657 * 25 23 21 28 28 H 1.48500 * 109.47332 * 331.13295 * 25 23 21 29 29 C 1.46921 * 120.62928 * 173.17644 * 9 7 6 30 30 N 1.28470 * 124.88909 * 305.28732 * 3 2 1 31 31 H 1.09007 * 109.46901 * 300.00090 * 1 2 3 32 32 H 1.09003 * 109.47249 * 59.99537 * 1 2 3 33 33 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47281 * 240.00175 * 2 1 3 35 35 H 1.08994 * 109.47601 * 119.99964 * 2 1 3 36 36 H 1.07994 * 126.38690 * 359.95029 * 4 3 2 37 37 H 1.08004 * 127.24165 * 180.02562 * 5 4 3 38 38 H 1.08998 * 109.58453 * 113.84272 * 10 9 7 39 39 H 1.09001 * 109.59061 * 353.41485 * 10 9 7 40 40 H 1.09001 * 109.49709 * 185.41220 * 11 10 9 41 41 H 1.08998 * 109.49756 * 65.32035 * 11 10 9 42 42 H 1.09002 * 109.46050 * 181.38380 * 12 11 10 43 43 H 1.08998 * 109.46198 * 301.34380 * 12 11 10 44 44 H 1.09006 * 110.71670 * 336.74689 * 17 15 13 45 45 H 1.08992 * 110.72437 * 100.02458 * 17 15 13 46 46 H 1.09006 * 111.00564 * 277.42354 * 18 17 15 47 47 H 1.08997 * 111.00675 * 153.57694 * 18 17 15 48 48 H 1.09004 * 110.36811 * 204.15246 * 19 18 17 49 49 H 1.09003 * 110.46363 * 81.88108 * 19 18 17 50 50 H 0.96999 * 119.99344 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.59047 * 246.16398 * 29 9 7 52 52 H 1.09003 * 109.58913 * 6.44931 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0832 3.1920 0.5707 6 6 2.3015 3.4121 -0.5880 7 6 2.1870 4.6757 -1.3441 8 8 2.6919 5.6924 -0.9090 9 7 1.5229 4.7016 -2.5168 10 6 1.0370 3.4578 -3.1295 11 6 1.5604 3.3792 -4.5671 12 6 1.1606 4.6494 -5.3214 13 6 1.7923 5.8673 -4.6434 14 1 2.8763 5.7550 -4.6301 15 6 1.4189 7.1334 -5.4173 16 1 1.6899 7.0194 -6.4669 17 6 2.1479 8.3520 -4.8131 18 6 1.0797 9.4739 -4.8997 19 6 -0.2245 8.6832 -4.6288 20 7 -0.0247 7.3850 -5.2980 21 6 -1.0190 6.5517 -5.7365 22 1 -1.9049 6.4057 -5.1364 23 6 -0.8880 5.8947 -6.9524 24 7 -1.7464 4.9553 -7.2885 25 14 0.5063 6.3441 -8.1114 26 1 1.6821 5.4820 -7.8288 27 1 0.0684 6.1392 -9.5155 28 1 0.8771 7.7680 -7.9112 29 6 1.2715 5.9742 -3.2067 30 7 1.6893 2.2769 -0.8602 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.3118 1.3752 1.7456 37 1 3.7140 3.9062 1.0791 38 1 -0.0529 3.4556 -3.1368 39 1 1.4025 2.6030 -2.5604 40 1 1.1295 2.5101 -5.0641 41 1 2.6466 3.2901 -4.5544 42 1 1.5106 4.5852 -6.3517 43 1 0.0754 4.7507 -5.3124 44 1 2.4236 8.1612 -3.7759 45 1 3.0259 8.6089 -5.4056 46 1 1.0649 9.9236 -5.8926 47 1 1.2446 10.2304 -4.1325 48 1 -1.0801 9.2040 -5.0588 49 1 -0.3677 8.5399 -3.5578 50 1 -1.6547 4.4960 -8.1379 51 1 0.2006 6.1772 -3.2202 52 1 1.7896 6.7802 -2.6870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963372070.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:44 Heat of formation + Delta-G solvation = 91.671919 kcal Electronic energy + Delta-G solvation = -32781.453093 eV Core-core repulsion = 28784.300168 eV Total energy + Delta-G solvation = -3997.152925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.73503 -39.74308 -38.24457 -36.18334 -34.76818 -32.93802 -32.31213 -30.97040 -30.64485 -30.05205 -29.89751 -27.13837 -25.64555 -24.48502 -23.96332 -22.57845 -22.04837 -21.31694 -20.33717 -20.05263 -19.45506 -18.73546 -17.30951 -16.72289 -16.46957 -16.24545 -15.87249 -15.26284 -14.84871 -14.65965 -14.43810 -13.89287 -13.78910 -13.74069 -13.36410 -13.17398 -13.15235 -13.01542 -12.69034 -12.63498 -12.44021 -12.33393 -11.89691 -11.83773 -11.76800 -11.54560 -11.42963 -11.04598 -10.79316 -10.60105 -10.51970 -10.30170 -10.26002 -10.03919 -9.88132 -9.79700 -9.49582 -9.43718 -9.17566 -9.11510 -9.07371 -8.36462 -7.98076 -6.67151 -5.98909 -3.44633 1.63743 2.12086 2.30490 3.31819 3.44253 3.46752 3.51394 3.65319 4.12974 4.51335 4.53975 4.61018 4.68454 4.78698 5.06230 5.08167 5.23689 5.26647 5.39621 5.42796 5.48227 5.59817 5.63319 5.66989 5.67503 5.71706 5.79695 5.81560 5.84763 6.00738 6.04141 6.16877 6.26950 6.33166 6.34718 6.41096 6.45462 6.47719 6.54739 6.66590 6.70262 6.76027 6.81387 6.88360 6.91233 6.97243 7.10312 7.17508 7.68603 7.78973 7.95720 8.05018 8.35898 8.53888 8.88946 9.66733 10.31382 11.15713 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.003686 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.477646 B = 7594.276506 C = 8749.909594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.289 5.289 4 C -0.021 4.021 5 C -0.182 4.182 6 C -0.006 4.006 7 C 0.595 3.405 8 O -0.547 6.547 9 N -0.589 5.589 10 C 0.093 3.907 11 C -0.129 4.129 12 C -0.145 4.145 13 C -0.095 4.095 14 H 0.050 0.950 15 C 0.149 3.851 16 H 0.037 0.963 17 C -0.132 4.132 18 C -0.135 4.135 19 C 0.129 3.871 20 N -0.603 5.603 21 C -0.244 4.244 22 H 0.082 0.918 23 C 0.046 3.954 24 N -0.906 5.906 25 Si 0.886 3.114 26 H -0.275 1.275 27 H -0.308 1.308 28 H -0.271 1.271 29 C 0.128 3.872 30 N -0.254 5.254 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.179 0.821 37 H 0.160 0.840 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.129 0.871 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.026 0.974 50 H 0.264 0.736 51 H 0.088 0.912 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -9.424 14.340 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.077 5.077 4 C -0.164 4.164 5 C -0.210 4.210 6 C -0.166 4.166 7 C 0.381 3.619 8 O -0.424 6.424 9 N -0.319 5.319 10 C -0.031 4.031 11 C -0.167 4.167 12 C -0.182 4.182 13 C -0.116 4.116 14 H 0.068 0.932 15 C 0.043 3.957 16 H 0.054 0.946 17 C -0.170 4.170 18 C -0.174 4.174 19 C 0.004 3.996 20 N -0.329 5.329 21 C -0.372 4.372 22 H 0.099 0.901 23 C -0.155 4.155 24 N -0.547 5.547 25 Si 0.718 3.282 26 H -0.202 1.202 27 H -0.237 1.237 28 H -0.196 1.196 29 C 0.007 3.993 30 N -0.089 5.089 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.196 0.804 37 H 0.178 0.822 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.044 0.956 50 H 0.074 0.926 51 H 0.106 0.894 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.620 -9.691 13.667 18.406 hybrid contribution 1.434 0.274 -0.323 1.495 sum 9.054 -9.418 13.344 18.674 Atomic orbital electron populations 1.22088 0.92968 1.03378 1.04232 1.21991 0.96842 0.76904 1.04573 1.45859 1.32303 1.10441 1.19059 1.22832 0.99556 0.95471 0.98553 1.21752 1.04807 0.96016 0.98394 1.22099 1.02068 0.93234 0.99203 1.17004 0.78486 0.85754 0.80619 1.90739 1.48405 1.33732 1.69525 1.48044 1.54102 1.09484 1.20319 1.22382 0.99614 0.86763 0.94303 1.21899 0.99608 0.99776 0.95412 1.22310 1.06862 0.91420 0.97566 1.21727 0.97834 0.97286 0.94795 0.93179 1.21289 0.86375 0.91852 0.96204 0.94583 1.22655 0.97499 0.95785 1.01021 1.22748 0.96815 0.96946 1.00862 1.21745 0.95207 0.86870 0.95765 1.44671 1.00010 1.17790 1.70462 1.18407 0.98610 1.20010 1.00175 0.90082 1.25438 0.96657 0.97406 0.95989 1.69761 1.37089 1.24532 1.23359 0.87076 0.82386 0.79264 0.79471 1.20235 1.23654 1.19638 1.21736 1.02398 0.83671 0.91538 1.73481 1.22366 0.98248 1.14830 0.91865 0.90420 0.90289 0.88885 0.88099 0.80399 0.82230 0.91394 0.86803 0.91530 0.93494 0.92636 0.85346 0.90994 0.92189 0.91920 0.91938 0.93452 0.95645 0.92648 0.89409 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.01 37.15 0.37 -0.74 16 2 C 0.12 0.72 7.12 -4.04 -0.03 0.69 16 3 N -0.29 -2.99 3.41 -61.33 -0.21 -3.20 16 4 C -0.02 -0.20 11.40 -17.16 -0.20 -0.40 16 5 C -0.18 -2.32 10.81 -39.36 -0.43 -2.75 16 6 C -0.01 -0.10 6.81 -82.77 -0.56 -0.66 16 7 C 0.60 11.19 7.69 -12.39 -0.10 11.10 16 8 O -0.55 -11.47 16.36 5.31 0.09 -11.39 16 9 N -0.59 -11.10 2.97 -173.94 -0.52 -11.62 16 10 C 0.09 1.62 6.10 -3.72 -0.02 1.60 16 11 C -0.13 -2.35 6.08 -26.61 -0.16 -2.52 16 12 C -0.14 -3.13 3.60 -26.69 -0.10 -3.23 16 13 C -0.10 -1.96 2.13 -90.49 -0.19 -2.15 16 14 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 15 C 0.15 3.19 2.07 -66.95 -0.14 3.05 16 16 H 0.04 0.86 3.28 -51.93 -0.17 0.69 16 17 C -0.13 -2.38 6.31 -24.90 -0.16 -2.54 16 18 C -0.14 -2.34 7.08 -24.59 -0.17 -2.52 16 19 C 0.13 2.58 7.23 -2.53 -0.02 2.56 16 20 N -0.60 -13.92 1.57 -162.57 -0.25 -14.17 16 21 C -0.24 -6.46 8.31 -15.06 -0.13 -6.58 16 22 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 23 C 0.05 1.25 3.64 -17.43 -0.06 1.19 16 24 N -0.91 -26.10 13.97 55.49 0.78 -25.33 16 25 Si 0.89 22.22 22.96 -169.99 -3.90 18.31 16 26 H -0.27 -6.66 5.54 56.52 0.31 -6.35 16 27 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 28 H -0.27 -6.79 6.69 56.52 0.38 -6.41 16 29 C 0.13 2.56 5.29 -3.71 -0.02 2.54 16 30 N -0.25 -3.54 8.16 33.42 0.27 -3.27 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.30 8.04 -51.93 -0.42 -0.12 16 36 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.11 1.83 4.20 -66.80 -0.28 1.55 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.28 4.99 -51.93 -0.26 1.02 16 43 H 0.13 3.18 4.52 -51.93 -0.23 2.95 16 44 H 0.07 1.26 6.16 -51.93 -0.32 0.94 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 51 H 0.09 1.92 7.14 -51.93 -0.37 1.55 16 52 H 0.08 1.62 5.41 -51.93 -0.28 1.34 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -32.16 382.43 -8.43 -40.60 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.34 Total: 5.66 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.11 Total: -1.35 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.07 Total: -57.59 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -3.90 Total: 18.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.16 -8.43 -40.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963372070.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.267 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds