Wall clock time and date at job start Wed Apr 1 2020 04:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47069 * 2 1 4 4 C 1.35043 * 124.88243 * 125.00536 * 3 2 1 5 5 C 1.35367 * 107.22489 * 179.97438 * 4 3 2 6 6 C 1.41499 * 105.50771 * 359.97438 * 5 4 3 7 7 C 1.47703 * 126.51901 * 179.97438 * 6 5 4 8 8 O 1.21567 * 120.00376 * 352.53433 * 7 6 5 9 9 N 1.34786 * 119.99950 * 172.52692 * 7 6 5 10 10 C 1.46921 * 120.62963 * 353.15920 * 9 7 6 11 11 C 1.53189 * 108.77454 * 233.62820 * 10 9 7 12 12 C 1.53038 * 109.31240 * 305.36366 * 11 10 9 13 13 C 1.53038 * 109.53527 * 61.36963 * 12 11 10 14 14 H 1.08991 * 109.50340 * 58.58450 * 13 12 11 15 15 C 1.53008 * 109.49899 * 178.68400 * 13 12 11 16 16 H 1.09002 * 109.86687 * 305.96665 * 15 13 12 17 17 C 1.54317 * 109.88485 * 184.79559 * 15 13 12 18 18 C 1.55154 * 102.94057 * 218.39006 * 17 15 13 19 19 C 1.54905 * 101.58456 * 35.49780 * 18 17 15 20 20 N 1.47024 * 109.88189 * 66.98224 * 15 13 12 21 21 C 1.36942 * 125.64779 * 298.32409 * 20 15 13 22 22 H 1.08000 * 119.99446 * 139.62072 * 21 20 15 23 23 C 1.38816 * 120.00014 * 319.61990 * 21 20 15 24 24 N 1.31617 * 119.99556 * 170.45822 * 23 21 20 25 25 Si 1.86798 * 120.00085 * 350.45754 * 23 21 20 26 26 H 1.48505 * 109.46779 * 91.12617 * 25 23 21 27 27 H 1.48501 * 109.47228 * 211.12657 * 25 23 21 28 28 H 1.48500 * 109.47332 * 331.13295 * 25 23 21 29 29 C 1.46921 * 120.62928 * 173.17644 * 9 7 6 30 30 N 1.28470 * 124.88909 * 305.28732 * 3 2 1 31 31 H 1.09007 * 109.46901 * 300.00090 * 1 2 3 32 32 H 1.09003 * 109.47249 * 59.99537 * 1 2 3 33 33 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47281 * 240.00175 * 2 1 3 35 35 H 1.08994 * 109.47601 * 119.99964 * 2 1 3 36 36 H 1.07994 * 126.38690 * 359.95029 * 4 3 2 37 37 H 1.08004 * 127.24165 * 180.02562 * 5 4 3 38 38 H 1.08998 * 109.58453 * 113.84272 * 10 9 7 39 39 H 1.09001 * 109.59061 * 353.41485 * 10 9 7 40 40 H 1.09001 * 109.49709 * 185.41220 * 11 10 9 41 41 H 1.08998 * 109.49756 * 65.32035 * 11 10 9 42 42 H 1.09002 * 109.46050 * 181.38380 * 12 11 10 43 43 H 1.08998 * 109.46198 * 301.34380 * 12 11 10 44 44 H 1.09006 * 110.71670 * 336.74689 * 17 15 13 45 45 H 1.08992 * 110.72437 * 100.02458 * 17 15 13 46 46 H 1.09006 * 111.00564 * 277.42354 * 18 17 15 47 47 H 1.08997 * 111.00675 * 153.57694 * 18 17 15 48 48 H 1.09004 * 110.36811 * 204.15246 * 19 18 17 49 49 H 1.09003 * 110.46363 * 81.88108 * 19 18 17 50 50 H 0.96999 * 119.99344 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.59047 * 246.16398 * 29 9 7 52 52 H 1.09003 * 109.58913 * 6.44931 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8975 0.9074 5 6 3.0832 3.1920 0.5707 6 6 2.3015 3.4121 -0.5880 7 6 2.1870 4.6757 -1.3441 8 8 2.6919 5.6924 -0.9090 9 7 1.5229 4.7016 -2.5168 10 6 1.0370 3.4578 -3.1295 11 6 1.5604 3.3792 -4.5671 12 6 1.1606 4.6494 -5.3214 13 6 1.7923 5.8673 -4.6434 14 1 2.8763 5.7550 -4.6301 15 6 1.4189 7.1334 -5.4173 16 1 1.6899 7.0194 -6.4669 17 6 2.1479 8.3520 -4.8131 18 6 1.0797 9.4739 -4.8997 19 6 -0.2245 8.6832 -4.6288 20 7 -0.0247 7.3850 -5.2980 21 6 -1.0190 6.5517 -5.7365 22 1 -1.9049 6.4057 -5.1364 23 6 -0.8880 5.8947 -6.9524 24 7 -1.7464 4.9553 -7.2885 25 14 0.5063 6.3441 -8.1114 26 1 1.6821 5.4820 -7.8288 27 1 0.0684 6.1392 -9.5155 28 1 0.8771 7.7680 -7.9112 29 6 1.2715 5.9742 -3.2067 30 7 1.6893 2.2769 -0.8602 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.3118 1.3752 1.7456 37 1 3.7140 3.9062 1.0791 38 1 -0.0529 3.4556 -3.1368 39 1 1.4025 2.6030 -2.5604 40 1 1.1295 2.5101 -5.0641 41 1 2.6466 3.2901 -4.5544 42 1 1.5106 4.5852 -6.3517 43 1 0.0754 4.7507 -5.3124 44 1 2.4236 8.1612 -3.7759 45 1 3.0259 8.6089 -5.4056 46 1 1.0649 9.9236 -5.8926 47 1 1.2446 10.2304 -4.1325 48 1 -1.0801 9.2040 -5.0588 49 1 -0.3677 8.5399 -3.5578 50 1 -1.6547 4.4960 -8.1379 51 1 0.2006 6.1772 -3.2202 52 1 1.7896 6.7802 -2.6870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963372070.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:43 Heat of formation + Delta-G solvation = 72.065639 kcal Electronic energy + Delta-G solvation = -32782.303285 eV Core-core repulsion = 28784.300168 eV Total energy + Delta-G solvation = -3998.003117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.65535 -41.29646 -39.83067 -37.74479 -35.48735 -34.81004 -33.97115 -32.44614 -31.75185 -31.67604 -30.91525 -28.67893 -27.01920 -26.31088 -25.06304 -24.13215 -23.08375 -22.28440 -21.84054 -21.64036 -21.02058 -20.14090 -18.58754 -18.25311 -17.83027 -17.61762 -17.20467 -16.83450 -16.25509 -15.96969 -15.53445 -15.31043 -15.19068 -15.15974 -15.01282 -14.68093 -14.51402 -14.26381 -14.12049 -13.97378 -13.59569 -13.49534 -13.26483 -13.20842 -13.04323 -12.95557 -12.83426 -12.44139 -12.29330 -12.17473 -12.08108 -11.96417 -11.90269 -11.76341 -11.59576 -11.33409 -11.24071 -10.86203 -10.77279 -10.36632 -10.19983 -10.02482 -9.57965 -8.60444 -8.13688 -5.55467 0.51680 1.23956 1.29617 1.39175 1.47813 1.54441 2.07559 2.33960 2.42843 3.15332 3.28559 3.39018 3.67853 3.85640 3.90246 3.99692 4.07591 4.08507 4.11791 4.14899 4.18835 4.23163 4.29342 4.39519 4.43723 4.51868 4.63184 4.66604 4.72568 4.78172 4.80194 4.82589 4.85815 4.89950 4.95026 5.01305 5.03319 5.09346 5.14343 5.15913 5.23542 5.24479 5.26673 5.35219 5.40667 5.49219 5.62643 5.81789 6.00291 6.03575 6.22632 6.40355 6.86922 6.90544 7.14738 7.59339 8.29578 9.04986 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.003686 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.477646 B = 7594.276506 C = 8749.909594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.279 5.279 4 C 0.008 3.992 5 C -0.203 4.203 6 C -0.044 4.044 7 C 0.592 3.408 8 O -0.576 6.576 9 N -0.595 5.595 10 C 0.101 3.899 11 C -0.123 4.123 12 C -0.140 4.140 13 C -0.091 4.091 14 H 0.060 0.940 15 C 0.141 3.859 16 H 0.020 0.980 17 C -0.125 4.125 18 C -0.122 4.122 19 C 0.122 3.878 20 N -0.615 5.615 21 C -0.227 4.227 22 H 0.043 0.957 23 C 0.011 3.989 24 N -0.945 5.945 25 Si 0.932 3.068 26 H -0.264 1.264 27 H -0.319 1.319 28 H -0.266 1.266 29 C 0.142 3.858 30 N -0.274 5.274 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.232 0.768 37 H 0.163 0.837 38 H 0.049 0.951 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.038 0.962 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.097 0.903 48 H 0.041 0.959 49 H 0.029 0.971 50 H 0.262 0.738 51 H 0.060 0.940 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.972 -10.676 16.534 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.010 4.010 3 N -0.068 5.068 4 C -0.135 4.135 5 C -0.231 4.231 6 C -0.201 4.201 7 C 0.381 3.619 8 O -0.456 6.456 9 N -0.326 5.326 10 C -0.021 4.021 11 C -0.161 4.161 12 C -0.177 4.177 13 C -0.112 4.112 14 H 0.078 0.922 15 C 0.035 3.965 16 H 0.038 0.962 17 C -0.163 4.163 18 C -0.160 4.160 19 C -0.002 4.002 20 N -0.341 5.341 21 C -0.356 4.356 22 H 0.061 0.939 23 C -0.186 4.186 24 N -0.589 5.589 25 Si 0.764 3.236 26 H -0.191 1.191 27 H -0.248 1.248 28 H -0.192 1.192 29 C 0.020 3.980 30 N -0.111 5.111 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.248 0.752 37 H 0.181 0.819 38 H 0.068 0.932 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.115 0.885 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.302 -10.931 15.877 21.856 hybrid contribution 0.524 0.545 -0.832 1.124 sum 10.826 -10.386 15.045 21.247 Atomic orbital electron populations 1.22074 0.93640 1.04494 1.02322 1.22484 0.96313 0.74832 1.07396 1.46321 1.31326 1.11129 1.17999 1.23518 0.97341 0.94196 0.98449 1.21978 1.05294 0.97921 0.97919 1.21793 1.04744 0.92778 1.00805 1.17464 0.77473 0.86791 0.80210 1.90695 1.49604 1.35172 1.70080 1.48093 1.54497 1.09206 1.20776 1.22365 0.98470 0.87194 0.94113 1.21849 1.00364 0.98447 0.95422 1.22115 1.04555 0.93751 0.97274 1.21671 0.98149 0.96573 0.94774 0.92165 1.21416 0.85486 0.93963 0.95667 0.96227 1.22655 0.98019 0.94131 1.01517 1.22700 0.94240 0.96996 1.02110 1.21882 0.96979 0.85866 0.95500 1.44733 1.00328 1.18712 1.70338 1.18119 0.98193 1.19924 0.99370 0.93938 1.25759 0.98368 0.97414 0.97046 1.69867 1.39191 1.26113 1.23774 0.86326 0.80794 0.79290 0.77174 1.19051 1.24843 1.19203 1.21409 1.00502 0.84664 0.91456 1.73255 1.22846 0.98487 1.16547 0.92578 0.93495 0.87701 0.87805 0.83560 0.75186 0.81907 0.93244 0.84724 0.90638 0.92239 0.94301 0.88831 0.90284 0.89943 0.91825 0.88461 0.94011 0.95256 0.92916 0.92161 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.01 71.98 0.72 -1.10 16 2 C 0.11 0.89 7.12 86.38 0.61 1.50 16 3 N -0.28 -4.90 3.41 -347.96 -1.19 -6.09 16 4 C 0.01 0.12 11.40 83.54 0.95 1.07 16 5 C -0.20 -4.79 10.81 22.41 0.24 -4.54 16 6 C -0.04 -1.35 6.81 42.45 0.29 -1.06 16 7 C 0.59 22.52 7.69 86.74 0.67 23.18 16 8 O -0.58 -24.45 16.36 -3.93 -0.06 -24.52 16 9 N -0.60 -22.92 2.97 -822.48 -2.44 -25.37 16 10 C 0.10 3.63 6.10 86.36 0.53 4.16 16 11 C -0.12 -4.52 6.08 30.67 0.19 -4.33 16 12 C -0.14 -6.19 3.60 30.62 0.11 -6.08 16 13 C -0.09 -3.75 2.13 -10.71 -0.02 -3.77 16 14 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.14 5.96 2.07 45.34 0.09 6.06 16 16 H 0.02 0.93 3.28 -2.39 -0.01 0.93 16 17 C -0.13 -4.25 6.31 31.78 0.20 -4.05 16 18 C -0.12 -3.94 7.08 31.98 0.23 -3.71 16 19 C 0.12 4.85 7.23 86.85 0.63 5.48 16 20 N -0.61 -28.91 1.57 -668.26 -1.05 -29.96 16 21 C -0.23 -12.57 8.31 84.03 0.70 -11.87 16 22 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 23 C 0.01 0.65 3.64 84.86 0.31 0.96 16 24 N -0.95 -56.96 13.97 21.65 0.30 -56.66 16 25 Si 0.93 46.80 22.96 68.60 1.57 48.37 16 26 H -0.26 -12.64 5.54 99.48 0.55 -12.08 16 27 H -0.32 -16.44 7.11 99.48 0.71 -15.73 16 28 H -0.27 -13.06 6.69 99.48 0.67 -12.40 16 29 C 0.14 5.80 5.29 86.37 0.46 6.26 16 30 N -0.27 -7.32 8.16 -48.18 -0.39 -7.71 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.15 -0.04 8.04 -2.39 -0.02 -0.06 16 36 H 0.23 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.14 4.33 4.20 -21.63 -0.09 4.24 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.82 4.99 -2.39 -0.01 1.80 16 43 H 0.09 4.86 4.52 -2.39 -0.01 4.85 16 44 H 0.08 2.59 6.16 -2.38 -0.01 2.57 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 47 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 51 H 0.06 2.78 7.14 -2.39 -0.02 2.76 16 52 H 0.08 3.26 5.41 -2.39 -0.01 3.25 16 Total: -1.00 -75.14 382.43 4.29 -70.85 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.65 Total: 22.94 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.90 Total: 8.14 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -4.77 Total: -125.79 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.57 Total: 48.37 kcal Total: -75.14 4.29 -70.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963372070.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.914 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds