Wall clock time and date at job start Wed Apr 1 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47410 * 2 1 4 4 N 1.39937 * 125.75437 * 270.02448 * 3 2 1 5 5 C 1.30441 * 108.89811 * 179.72905 * 4 3 2 6 6 C 1.41287 * 108.02564 * 0.38422 * 5 4 3 7 7 C 1.47429 * 126.41702 * 179.88084 * 6 5 4 8 8 O 1.21606 * 119.99814 * 174.40931 * 7 6 5 9 9 N 1.34772 * 119.99896 * 354.40957 * 7 6 5 10 10 C 1.46504 * 120.00058 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.49596 * 34.94134 * 10 9 7 12 12 C 1.53184 * 109.52677 * 274.85873 * 10 9 7 13 13 N 1.46932 * 108.77599 * 185.39793 * 12 10 9 14 14 C 1.36939 * 120.62984 * 233.58495 * 13 12 10 15 15 H 1.08000 * 120.00203 * 148.81375 * 14 13 12 16 16 C 1.38810 * 119.99694 * 328.81882 * 14 13 12 17 17 N 1.31624 * 120.00339 * 349.35240 * 16 14 13 18 18 Si 1.86804 * 119.99937 * 169.35404 * 16 14 13 19 19 H 1.48508 * 109.46966 * 59.99829 * 18 16 14 20 20 H 1.48503 * 109.47221 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47201 * 299.99704 * 18 16 14 22 22 C 1.46920 * 118.73805 * 53.60509 * 13 12 10 23 23 C 1.53192 * 108.77570 * 306.39145 * 22 13 12 24 24 C 1.53040 * 109.31372 * 54.63889 * 23 22 13 25 25 H 1.09005 * 109.44678 * 58.64202 * 24 23 22 26 26 C 1.52998 * 109.45935 * 178.61266 * 24 23 22 27 27 C 1.34262 * 125.75661 * 89.99690 * 3 2 1 28 28 C 1.50694 * 126.29146 * 0.04468 * 27 3 2 29 29 C 1.53001 * 117.50314 * 130.34382 * 28 27 3 30 30 C 1.52997 * 117.50085 * 61.71985 * 28 27 3 31 31 H 1.09004 * 109.47149 * 60.00141 * 1 2 3 32 32 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47383 * 300.00554 * 1 2 3 34 34 H 1.08999 * 109.47383 * 239.99446 * 2 1 3 35 35 H 1.09004 * 109.47149 * 119.99858 * 2 1 3 36 36 H 1.08008 * 125.98964 * 180.26535 * 5 4 3 37 37 H 0.96995 * 120.00137 * 0.02562 * 9 7 6 38 38 H 1.09000 * 109.58764 * 305.18233 * 12 10 9 39 39 H 1.09001 * 109.58779 * 65.61065 * 12 10 9 40 40 H 0.97003 * 119.99735 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58907 * 66.18021 * 22 13 12 42 42 H 1.09004 * 109.58739 * 186.46616 * 22 13 12 43 43 H 1.08999 * 109.50069 * 294.68514 * 23 22 13 44 44 H 1.09004 * 109.49681 * 174.58844 * 23 22 13 45 45 H 1.09003 * 109.46657 * 180.02562 * 26 24 23 46 46 H 1.08994 * 109.47130 * 300.06463 * 26 24 23 47 47 H 1.08998 * 109.47411 * 60.06908 * 26 24 23 48 48 H 1.09004 * 115.54884 * 276.05341 * 28 27 3 49 49 H 1.09005 * 117.49370 * 0.02562 * 29 28 27 50 50 H 1.08996 * 117.49934 * 145.01588 * 29 28 27 51 51 H 1.09004 * 117.50054 * 214.98103 * 30 28 27 52 52 H 1.09000 * 117.50018 * 0.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.2905 2.1522 -1.1356 5 6 2.7013 3.3310 -0.7574 6 6 2.7162 3.3564 0.6552 7 6 3.1166 4.4919 1.5060 8 8 2.9886 4.4218 2.7133 9 7 3.6245 5.6074 0.9457 10 6 4.0219 6.7360 1.7911 11 1 4.4282 6.3614 2.7307 12 6 2.8014 7.6165 2.0768 13 7 3.2407 8.8089 2.8145 14 6 2.6520 9.1503 4.0028 15 1 3.2274 9.6539 4.7655 16 6 1.3157 8.8489 4.2272 17 7 0.5600 8.4294 3.2346 18 14 0.5900 9.0387 5.9380 19 1 0.7174 10.4521 6.3757 20 1 -0.8448 8.6565 5.9123 21 1 1.3201 8.1592 6.8859 22 6 4.3231 9.6282 2.2526 23 6 5.5266 8.7251 1.9651 24 6 5.0865 7.5652 1.0690 25 1 4.6716 7.9602 0.1416 26 6 6.2933 6.6801 0.7513 27 6 2.2798 2.1208 1.0895 28 6 2.1258 1.6827 2.5231 29 6 3.3072 1.9211 3.4656 30 6 2.9770 0.5027 2.9965 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.9828 4.1445 -1.4097 37 1 3.7263 5.6634 -0.0172 38 1 2.3402 7.9180 1.1363 39 1 2.0818 7.0599 2.6772 40 1 -0.3739 8.2191 3.3914 41 1 3.9861 10.0937 1.3265 42 1 4.6058 10.4005 2.9680 43 1 5.9187 8.3317 2.9030 44 1 6.3015 9.3015 1.4596 45 1 5.9800 5.8541 0.1127 46 1 7.0515 7.2705 0.2370 47 1 6.7080 6.2846 1.6785 48 1 1.1227 1.7784 2.9388 49 1 4.1958 2.3953 3.0488 50 1 3.0815 2.1740 4.5015 51 1 2.5340 -0.1776 3.7240 52 1 3.6487 0.0436 2.2712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968518123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:43 Heat of formation + Delta-G solvation = 59.656078 kcal Electronic energy + Delta-G solvation = -31981.595838 eV Core-core repulsion = 27983.054602 eV Total energy + Delta-G solvation = -3998.541236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.58045 -40.60141 -38.90267 -37.96295 -35.97297 -35.43941 -34.52000 -32.78673 -31.40489 -31.10525 -29.86631 -28.90111 -26.02444 -25.47279 -24.29703 -23.82298 -23.37405 -22.75583 -22.54488 -21.15073 -20.97027 -20.11757 -18.73888 -18.54876 -17.20147 -17.13940 -16.73610 -16.55297 -15.85941 -15.64715 -15.58193 -15.48564 -15.31029 -15.18199 -14.84284 -14.68678 -14.47504 -14.31361 -14.02535 -13.51456 -13.42358 -13.21099 -13.04402 -13.01228 -12.96315 -12.67819 -12.56879 -12.51611 -12.38020 -12.31177 -12.17526 -12.09254 -11.88919 -11.59276 -11.53082 -11.35838 -11.16772 -11.13830 -10.61251 -10.53998 -10.39674 -9.96783 -9.56014 -8.60489 -7.85067 -5.37348 0.49551 1.17944 1.33694 1.41457 1.46419 1.51408 2.38587 2.52484 2.59433 2.76139 3.31056 3.36220 3.46782 3.79614 3.87264 3.89593 3.94804 4.03615 4.03964 4.05803 4.14244 4.20989 4.27709 4.32195 4.44089 4.54918 4.64150 4.69617 4.70803 4.75554 4.77510 4.80411 4.86995 4.96454 4.98983 5.03061 5.11680 5.16153 5.16327 5.21588 5.21820 5.26545 5.35853 5.42494 5.50167 5.57537 5.60747 5.65133 5.87842 5.89853 6.41319 6.51578 6.83819 7.15809 7.53915 7.87932 8.38109 9.18324 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003575 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.169897 B = 7829.579768 C = 9171.407593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.350 5.350 4 N -0.313 5.313 5 C 0.084 3.916 6 C -0.310 4.310 7 C 0.583 3.417 8 O -0.573 6.573 9 N -0.706 5.706 10 C 0.147 3.853 11 H 0.049 0.951 12 C 0.182 3.818 13 N -0.610 5.610 14 C -0.266 4.266 15 H 0.066 0.934 16 C -0.048 4.048 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.294 1.294 21 H -0.282 1.282 22 C 0.136 3.864 23 C -0.115 4.115 24 C -0.085 4.085 25 H 0.077 0.923 26 C -0.133 4.133 27 C 0.182 3.818 28 C -0.118 4.118 29 C -0.133 4.133 30 C -0.143 4.143 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.214 0.786 37 H 0.406 0.594 38 H -0.006 1.006 39 H 0.044 0.956 40 H 0.246 0.754 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.042 0.958 48 H 0.121 0.879 49 H 0.074 0.926 50 H 0.092 0.908 51 H 0.129 0.871 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.688 -18.524 -9.378 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.129 5.129 4 N -0.132 5.132 5 C -0.103 4.103 6 C -0.325 4.325 7 C 0.371 3.629 8 O -0.453 6.453 9 N -0.357 5.357 10 C 0.041 3.959 11 H 0.067 0.933 12 C 0.055 3.945 13 N -0.334 5.334 14 C -0.396 4.396 15 H 0.083 0.917 16 C -0.243 4.243 17 N -0.578 5.578 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.221 1.221 21 H -0.208 1.208 22 C 0.011 3.989 23 C -0.154 4.154 24 C -0.105 4.105 25 H 0.095 0.905 26 C -0.190 4.190 27 C 0.049 3.951 28 C -0.138 4.138 29 C -0.171 4.171 30 C -0.180 4.180 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.231 0.769 37 H 0.242 0.758 38 H 0.012 0.988 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.061 0.939 48 H 0.139 0.861 49 H 0.093 0.907 50 H 0.111 0.889 51 H 0.147 0.853 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.121 -19.502 -9.567 22.860 hybrid contribution -0.909 1.213 1.161 1.909 sum 6.212 -18.289 -8.406 21.065 Atomic orbital electron populations 1.22154 0.93475 1.04657 1.02052 1.22205 0.95984 0.75823 1.06442 1.48825 1.48754 1.13089 1.02205 1.77088 1.23180 1.04758 1.08203 1.24369 0.96587 0.96089 0.93271 1.20072 1.21892 0.96299 0.94227 1.17565 0.76372 0.82030 0.86897 1.90774 1.56071 1.82425 1.16008 1.45603 1.64828 1.14625 1.10620 1.21403 0.95789 0.85645 0.93060 0.93275 1.20782 0.93464 0.86945 0.93303 1.44210 1.40767 1.25372 1.23011 1.19455 0.91988 1.35435 0.92735 0.91669 1.25896 0.96467 1.01222 1.00734 1.70146 1.05798 1.50376 1.31473 0.85394 0.76743 0.78426 0.80234 1.19312 1.22062 1.20793 1.21169 0.88346 0.93106 0.96283 1.21960 0.97810 0.96487 0.99180 1.21263 0.95162 0.95572 0.98459 0.90486 1.21746 0.96723 0.99334 1.01227 1.20707 0.93942 0.90516 0.89977 1.20446 0.98749 1.06761 0.87865 1.22600 0.97421 0.98343 0.98779 1.23284 1.00864 0.90661 1.03172 0.93123 0.87331 0.93062 0.86976 0.86401 0.76917 0.75793 0.98816 0.93727 0.94494 0.96264 0.92708 0.93175 0.88713 0.91978 0.90506 0.93926 0.86079 0.90690 0.88919 0.85285 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.11 1.62 6.93 86.38 0.60 2.22 16 3 N -0.35 -8.17 3.58 -333.01 -1.19 -9.36 16 4 N -0.31 -8.16 12.50 -56.28 -0.70 -8.86 16 5 C 0.08 2.17 11.50 85.65 0.99 3.15 16 6 C -0.31 -9.74 6.10 -20.15 -0.12 -9.87 16 7 C 0.58 22.16 7.61 86.66 0.66 22.82 16 8 O -0.57 -26.41 13.11 -4.05 -0.05 -26.47 16 9 N -0.71 -24.16 4.36 -445.43 -1.94 -26.10 16 10 C 0.15 5.93 2.06 45.07 0.09 6.02 16 11 H 0.05 2.30 7.58 -2.39 -0.02 2.29 16 12 C 0.18 9.45 4.83 86.36 0.42 9.86 16 13 N -0.61 -32.33 2.99 -699.10 -2.09 -34.42 16 14 C -0.27 -15.55 9.58 84.03 0.81 -14.75 16 15 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 16 C -0.05 -2.85 5.05 84.86 0.43 -2.42 16 17 N -0.93 -59.07 11.04 21.65 0.24 -58.83 16 18 Si 0.96 48.06 29.57 68.60 2.03 50.09 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 21 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 22 C 0.14 5.69 6.52 86.36 0.56 6.25 16 23 C -0.12 -3.74 5.36 30.67 0.16 -3.57 16 24 C -0.09 -2.64 2.27 -10.77 -0.02 -2.66 16 25 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 26 C -0.13 -3.16 9.02 71.98 0.65 -2.51 16 27 C 0.18 5.08 6.44 42.14 0.27 5.35 16 28 C -0.12 -3.00 5.20 -11.54 -0.06 -3.06 16 29 C -0.13 -3.62 7.98 30.59 0.24 -3.38 16 30 C -0.14 -2.47 9.01 30.59 0.28 -2.20 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.12 1.17 6.51 -2.39 -0.02 1.15 16 36 H 0.21 3.96 7.53 -2.91 -0.02 3.94 16 37 H 0.41 10.79 7.29 -92.71 -0.68 10.11 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.04 2.78 6.09 -2.39 -0.01 2.76 16 40 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 45 H 0.06 1.33 7.36 -2.39 -0.02 1.32 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.12 3.12 8.14 -2.38 -0.02 3.11 16 49 H 0.07 2.37 7.48 -2.38 -0.02 2.35 16 50 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 51 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.10 1.55 8.01 -2.39 -0.02 1.53 16 Total: -1.00 -80.44 410.10 3.21 -77.23 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.24 Total: 26.92 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.68 Total: 9.79 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -5.68 Total: -137.57 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -80.44 3.21 -77.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968518123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.883 kcal (2) G-P(sol) polarization free energy of solvation -80.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds