Wall clock time and date at job start Wed Apr 1 2020 04:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47103 * 2 1 4 4 N 1.39930 * 125.75582 * 269.99841 * 3 2 1 5 5 C 1.30450 * 108.89675 * 179.73625 * 4 3 2 6 6 C 1.41298 * 108.01981 * 0.41231 * 5 4 3 7 7 C 1.47436 * 126.41209 * 179.85456 * 6 5 4 8 8 O 1.21600 * 119.99651 * 179.68030 * 7 6 5 9 9 N 1.34772 * 119.99926 * 359.68454 * 7 6 5 10 10 C 1.46498 * 120.00089 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.01797 * 36.06395 * 10 9 7 12 12 C 1.52528 * 108.97641 * 277.16699 * 10 9 7 13 13 C 1.53841 * 111.65323 * 293.50694 * 12 10 9 14 14 C 1.51432 * 107.04228 * 302.80311 * 13 12 10 15 15 H 1.08998 * 109.87099 * 305.81475 * 14 13 12 16 16 C 1.52327 * 117.45935 * 178.78533 * 14 13 12 17 17 N 1.48241 * 105.86659 * 214.66707 * 16 14 13 18 18 C 1.36942 * 125.78823 * 183.18695 * 17 16 14 19 19 H 1.07990 * 120.00028 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99587 * 359.97354 * 18 17 16 21 21 N 1.31625 * 120.00029 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99998 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46869 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47234 * 120.00061 * 22 20 18 25 25 H 1.48497 * 109.46888 * 240.00344 * 22 20 18 26 26 C 1.48662 * 108.43284 * 3.18838 * 17 16 14 27 27 C 1.53066 * 103.44188 * 24.37570 * 26 17 16 28 28 H 1.08988 * 111.36582 * 75.99494 * 27 26 17 29 29 C 1.51626 * 116.66780 * 204.12671 * 27 26 17 30 30 C 1.34258 * 125.75062 * 89.99994 * 3 2 1 31 31 C 1.50706 * 126.29318 * 0.02562 * 30 3 2 32 32 H 1.09004 * 109.46938 * 59.99796 * 1 2 3 33 33 H 1.09003 * 109.47380 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47359 * 299.99834 * 1 2 3 35 35 H 1.09001 * 109.46652 * 240.00172 * 2 1 3 36 36 H 1.08995 * 109.46835 * 120.00243 * 2 1 3 37 37 H 1.07997 * 125.99010 * 180.26518 * 5 4 3 38 38 H 0.96998 * 120.00423 * 0.02562 * 9 7 6 39 39 H 1.08997 * 109.04389 * 54.06869 * 12 10 9 40 40 H 1.09002 * 109.04293 * 172.95272 * 12 10 9 41 41 H 1.09005 * 109.93627 * 62.18108 * 13 12 10 42 42 H 1.08999 * 109.94440 * 183.41358 * 13 12 10 43 43 H 1.09004 * 110.17174 * 333.76696 * 16 14 13 44 44 H 1.09005 * 110.17420 * 95.49494 * 16 14 13 45 45 H 0.96993 * 119.99496 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.62243 * 265.88796 * 26 17 16 47 47 H 1.08994 * 110.62841 * 142.86681 * 26 17 16 48 48 H 1.09006 * 109.93979 * 295.62092 * 29 27 26 49 49 H 1.08992 * 109.94500 * 56.77711 * 29 27 26 50 50 H 1.08989 * 109.47363 * 270.00146 * 31 30 3 51 51 H 1.09006 * 109.47078 * 30.00180 * 31 30 3 52 52 H 1.09001 * 109.47344 * 149.99678 * 31 30 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2909 2.1521 -1.1356 5 6 2.7017 3.3310 -0.7572 6 6 2.7167 3.3561 0.6554 7 6 3.1176 4.4914 1.5064 8 8 3.0800 4.3866 2.7173 9 7 3.5256 5.6453 0.9421 10 6 3.9235 6.7736 1.7876 11 1 4.4313 6.3920 2.6734 12 6 2.6740 7.5344 2.2197 13 6 1.9812 8.2130 1.0254 14 6 3.0030 9.1248 0.3791 15 1 3.4168 9.8044 1.1241 16 6 2.5693 9.9004 -0.8581 17 7 3.7676 9.9803 -1.7271 18 6 3.8482 10.6463 -2.9209 19 1 4.7724 10.6435 -3.4795 20 6 2.7418 11.3251 -3.4129 21 7 1.6155 11.3289 -2.7318 22 14 2.8513 12.2332 -5.0417 23 1 4.2166 12.0767 -5.6048 24 1 1.8567 11.6705 -5.9900 25 1 2.5682 13.6746 -4.8248 26 6 4.8672 9.2147 -1.0830 27 6 4.1288 8.2140 -0.1906 28 1 3.7049 7.3979 -0.7755 29 6 4.8932 7.6722 1.0015 30 6 2.2798 2.1208 1.0896 31 6 2.1255 1.6825 2.5233 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 2.9835 4.1444 -1.4095 38 1 3.5552 5.7291 -0.0238 39 1 1.9773 6.8381 2.6864 40 1 2.9551 8.2957 2.9473 41 1 1.6504 7.4596 0.3105 42 1 1.1288 8.7969 1.3727 43 1 1.7671 9.3705 -1.3719 44 1 2.2393 10.9008 -0.5782 45 1 0.8426 11.8035 -3.0755 46 1 5.4942 9.8744 -0.4832 47 1 5.4629 8.6940 -1.8327 48 1 5.7480 7.0879 0.6607 49 1 5.2327 8.4949 1.6307 50 1 1.1194 1.9190 2.8692 51 1 2.2908 0.6075 2.5944 52 1 2.8548 2.2040 3.1432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980205382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:27 Heat of formation + Delta-G solvation = 33.292997 kcal Electronic energy + Delta-G solvation = -31307.323369 eV Core-core repulsion = 27307.638944 eV Total energy + Delta-G solvation = -3999.684425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.50504 -41.27839 -39.62733 -37.02200 -35.64068 -34.65170 -33.42027 -33.10710 -32.05585 -30.89082 -30.12521 -28.34485 -27.66864 -26.80875 -24.91360 -23.76322 -23.50153 -22.01245 -21.62530 -21.36169 -20.52642 -20.02609 -18.73746 -18.61335 -17.14903 -16.83820 -16.64542 -16.56073 -16.02398 -15.86527 -15.65962 -15.41007 -15.20226 -14.75348 -14.66284 -14.58636 -14.36439 -14.03291 -13.89708 -13.62358 -13.58678 -13.37344 -13.31742 -13.23094 -12.93683 -12.87919 -12.79965 -12.60753 -12.42483 -12.36162 -12.25318 -11.94339 -11.84726 -11.79062 -11.73125 -11.36236 -10.93786 -10.76706 -10.74941 -10.65443 -10.40958 -9.98033 -9.53481 -8.85360 -7.81167 -5.15654 0.53313 1.15931 1.39253 1.46105 1.46884 1.57122 2.41696 2.51138 2.53291 3.37014 3.48502 3.59511 3.60519 3.68711 3.80068 3.90035 3.96269 4.03441 4.04890 4.21194 4.23683 4.33830 4.40134 4.49534 4.52227 4.54299 4.66300 4.66983 4.73498 4.76543 4.80402 4.82020 4.91667 4.96518 5.01507 5.05596 5.12055 5.14777 5.19498 5.22074 5.26726 5.32014 5.41166 5.43515 5.51947 5.60741 5.71119 5.79383 5.85722 5.94428 6.21305 6.52454 6.71839 7.12256 7.39405 7.79820 8.47138 9.29424 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.002612 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.165568 B =10715.132118 C =11940.395444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.358 5.358 4 N -0.325 5.325 5 C 0.080 3.920 6 C -0.324 4.324 7 C 0.597 3.403 8 O -0.579 6.579 9 N -0.713 5.713 10 C 0.159 3.841 11 H 0.089 0.911 12 C -0.116 4.116 13 C -0.090 4.090 14 C -0.105 4.105 15 H 0.070 0.930 16 C 0.199 3.801 17 N -0.633 5.633 18 C -0.234 4.234 19 H 0.082 0.918 20 C -0.071 4.071 21 N -0.952 5.952 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.294 1.294 25 H -0.294 1.294 26 C 0.136 3.864 27 C -0.089 4.089 28 H 0.070 0.930 29 C -0.099 4.099 30 C 0.157 3.843 31 C -0.094 4.094 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.201 0.799 38 H 0.403 0.597 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.000 1.000 44 H 0.006 0.994 45 H 0.244 0.756 46 H 0.030 0.970 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.100 0.900 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -24.339 12.121 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.138 5.138 4 N -0.144 5.144 5 C -0.107 4.107 6 C -0.338 4.338 7 C 0.387 3.613 8 O -0.461 6.461 9 N -0.365 5.365 10 C 0.054 3.946 11 H 0.107 0.893 12 C -0.154 4.154 13 C -0.128 4.128 14 C -0.125 4.125 15 H 0.088 0.912 16 C 0.075 3.925 17 N -0.360 5.360 18 C -0.364 4.364 19 H 0.100 0.900 20 C -0.264 4.264 21 N -0.602 5.602 22 Si 0.804 3.196 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.222 1.222 26 C 0.012 3.988 27 C -0.108 4.108 28 H 0.088 0.912 29 C -0.137 4.137 30 C 0.023 3.977 31 C -0.152 4.152 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.217 0.783 38 H 0.240 0.760 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.018 0.982 44 H 0.024 0.976 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.110 0.890 50 H 0.110 0.890 51 H 0.119 0.881 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.725 -25.201 11.802 27.881 hybrid contribution -0.359 1.749 -1.220 2.163 sum 1.366 -23.452 10.582 25.765 Atomic orbital electron populations 1.22163 0.93349 1.04639 1.02230 1.22197 0.96000 0.75848 1.06560 1.48921 1.49001 1.13223 1.02612 1.77137 1.23397 1.05024 1.08860 1.24305 0.96463 0.95824 0.94105 1.20127 1.22939 0.97083 0.93689 1.17302 0.75673 0.81756 0.86619 1.90677 1.56873 1.83530 1.15009 1.45969 1.67247 1.12493 1.10757 1.20966 0.94440 0.85383 0.93770 0.89306 1.21841 0.97017 0.99308 0.97280 1.21137 0.97194 0.97302 0.97212 1.21969 0.97476 0.96688 0.96322 0.91155 1.20499 0.88104 0.95598 0.88341 1.45466 1.09314 1.59981 1.21238 1.19514 0.97209 1.23647 0.95998 0.89974 1.25628 0.95852 1.02505 1.02400 1.70212 1.02167 1.48024 1.39790 0.85046 0.77656 0.77553 0.79332 1.18887 1.22135 1.22165 1.21513 0.90518 0.92273 0.94480 1.21923 0.96588 0.96392 0.95941 0.91170 1.21593 0.97181 0.99407 0.95524 1.21916 0.93121 0.90412 0.92264 1.20721 1.04848 1.03177 0.86412 0.93647 0.87554 0.92151 0.87726 0.85599 0.78285 0.76039 0.92378 0.90078 0.92978 0.92583 0.98166 0.97576 0.94700 0.95249 0.93639 0.89492 0.89031 0.88953 0.88106 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 71.98 0.74 -0.78 16 2 C 0.11 1.14 6.93 86.38 0.60 1.74 16 3 N -0.36 -6.86 3.58 -333.00 -1.19 -8.05 16 4 N -0.33 -7.98 12.50 -56.27 -0.70 -8.68 16 5 C 0.08 1.90 11.50 85.65 0.99 2.88 16 6 C -0.32 -7.87 6.13 -20.15 -0.12 -8.00 16 7 C 0.60 15.70 7.67 86.67 0.67 16.36 16 8 O -0.58 -17.49 14.37 -4.03 -0.06 -17.55 16 9 N -0.71 -16.85 4.65 -445.24 -2.07 -18.93 16 10 C 0.16 3.67 2.68 45.11 0.12 3.79 16 11 H 0.09 2.05 7.58 -2.38 -0.02 2.04 16 12 C -0.12 -2.93 5.40 30.72 0.17 -2.76 16 13 C -0.09 -2.79 5.57 30.36 0.17 -2.62 16 14 C -0.11 -3.76 2.31 -10.63 -0.02 -3.79 16 15 H 0.07 2.43 7.92 -2.39 -0.02 2.42 16 16 C 0.20 9.93 5.07 85.82 0.43 10.36 16 17 N -0.63 -32.58 3.45 -693.06 -2.39 -34.97 16 18 C -0.23 -13.27 10.30 84.03 0.87 -12.41 16 19 H 0.08 4.44 7.83 -2.92 -0.02 4.41 16 20 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 21 N -0.95 -58.64 10.36 21.65 0.22 -58.42 16 22 Si 0.98 46.67 29.55 68.60 2.03 48.69 16 23 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 C 0.14 5.30 6.90 85.98 0.59 5.89 16 27 C -0.09 -2.75 2.41 -10.32 -0.02 -2.78 16 28 H 0.07 2.19 6.22 -2.39 -0.01 2.18 16 29 C -0.10 -2.23 5.37 30.42 0.16 -2.07 16 30 C 0.16 3.21 7.01 42.14 0.30 3.51 16 31 C -0.09 -1.35 9.57 71.24 0.68 -0.67 16 32 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.13 0.49 7.02 -2.39 -0.02 0.48 16 37 H 0.20 3.90 7.50 -2.91 -0.02 3.88 16 38 H 0.40 8.97 5.77 -92.71 -0.53 8.44 16 39 H 0.06 1.57 7.93 -2.39 -0.02 1.55 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.69 7.89 -2.38 -0.02 1.67 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.00 0.01 7.60 -2.39 -0.02 -0.01 16 44 H 0.01 0.34 7.30 -2.38 -0.02 0.32 16 45 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.09 1.92 7.98 -2.39 -0.02 1.90 16 50 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.10 0.75 7.05 -2.38 -0.02 0.74 16 52 H 0.09 1.69 6.50 -2.39 -0.02 1.67 16 Total: -1.00 -76.52 402.16 2.99 -73.54 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.38 Total: 19.37 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.77 Total: 5.00 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -6.13 Total: -129.05 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.06 Total: -17.55 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.52 2.99 -73.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980205382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.829 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds