Wall clock time and date at job start Wed Apr 1 2020 04:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47566 * 2 1 4 4 C 1.34258 * 125.75606 * 125.30107 * 3 2 1 5 5 C 1.38037 * 107.41566 * 180.11471 * 4 3 2 6 6 C 1.47440 * 126.41104 * 179.87683 * 5 4 3 7 7 O 1.21600 * 119.99651 * 200.37788 * 6 5 4 8 8 N 1.34770 * 120.00138 * 20.38294 * 6 5 4 9 9 C 1.48120 * 127.84419 * 354.09821 * 8 6 5 10 10 C 1.54314 * 104.71184 * 140.22856 * 9 8 6 11 11 C 1.52996 * 112.07418 * 146.94422 * 10 9 8 12 12 C 1.53758 * 109.07928 * 271.63976 * 10 9 8 13 13 N 1.47204 * 106.40550 * 93.20425 * 12 10 9 14 14 C 1.36942 * 126.69966 * 211.29936 * 13 12 10 15 15 H 1.07995 * 120.00344 * 17.35974 * 14 13 12 16 16 C 1.38811 * 119.99590 * 197.36401 * 14 13 12 17 17 N 1.31621 * 120.00185 * 5.82839 * 16 14 13 18 18 Si 1.86798 * 119.99899 * 185.82835 * 16 14 13 19 19 H 1.48501 * 109.47228 * 94.87332 * 18 16 14 20 20 H 1.48498 * 109.46910 * 214.86999 * 18 16 14 21 21 H 1.48498 * 109.47054 * 334.86999 * 18 16 14 22 22 C 1.47205 * 106.59430 * 31.55406 * 13 12 10 23 23 C 1.54038 * 106.26654 * 328.37220 * 22 13 12 24 24 C 1.52997 * 112.76815 * 141.67240 * 23 22 13 25 25 C 1.48111 * 127.84518 * 174.10790 * 8 6 5 26 26 C 1.41289 * 107.17188 * 359.60817 * 5 4 3 27 27 C 1.50700 * 125.98680 * 180.24121 * 26 5 4 28 28 N 1.30445 * 108.02222 * 0.24386 * 26 5 4 29 29 H 1.08994 * 109.47500 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47244 * 300.00744 * 1 2 3 31 31 H 1.09010 * 109.46414 * 59.99793 * 1 2 3 32 32 H 1.08998 * 109.47244 * 239.99256 * 2 1 3 33 33 H 1.09009 * 109.46757 * 119.99791 * 2 1 3 34 34 H 1.08000 * 126.28752 * 359.96939 * 4 3 2 35 35 H 1.08995 * 110.38857 * 21.41840 * 9 8 6 36 36 H 1.09002 * 110.48327 * 259.08273 * 9 8 6 37 37 H 1.09001 * 109.47216 * 182.00977 * 11 10 9 38 38 H 1.09002 * 109.47463 * 302.01059 * 11 10 9 39 39 H 1.09003 * 109.47188 * 62.00637 * 11 10 9 40 40 H 1.09005 * 110.07071 * 333.96637 * 12 10 9 41 41 H 1.08994 * 110.06831 * 212.43951 * 12 10 9 42 42 H 0.97001 * 120.00330 * 180.02562 * 17 16 14 43 43 H 1.08992 * 110.06477 * 87.68908 * 22 13 12 44 44 H 1.09003 * 110.06474 * 209.21747 * 22 13 12 45 45 H 1.08998 * 109.47314 * 301.38451 * 24 23 22 46 46 H 1.08994 * 109.47222 * 61.38777 * 24 23 22 47 47 H 1.08997 * 109.47324 * 181.38535 * 24 23 22 48 48 H 1.09000 * 110.38912 * 338.58386 * 25 8 6 49 49 H 1.08996 * 110.38939 * 100.85279 * 25 8 6 50 50 H 1.08998 * 109.47034 * 90.00200 * 27 26 5 51 51 H 1.09002 * 109.47096 * 210.00004 * 27 26 5 52 52 H 1.09000 * 109.47418 * 330.00461 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.8736 1.9109 0.8892 5 6 3.0718 3.2306 0.5362 6 6 3.9341 4.2028 1.2327 7 8 3.7573 5.3953 1.0739 8 7 4.9183 3.7697 2.0452 9 6 5.2104 2.3771 2.4564 10 6 6.7503 2.2784 2.4400 11 6 7.2772 1.3296 3.5184 12 6 7.2126 1.8669 1.0325 13 7 7.4958 3.1156 0.3062 14 6 7.3539 3.3302 -1.0388 15 1 6.7518 2.6583 -1.6323 16 6 7.9842 4.4114 -1.6393 17 7 8.8090 5.1631 -0.9415 18 14 7.6616 4.7996 -3.4378 19 1 6.5871 5.8197 -3.5391 20 1 8.9029 5.3247 -4.0612 21 1 7.2384 3.5631 -4.1429 22 6 7.9672 4.0865 1.3072 23 6 7.2427 3.7378 2.6211 24 6 8.1383 3.8969 3.8513 25 6 5.9532 4.5784 2.7299 26 6 2.2985 3.4735 -0.6210 27 6 2.2073 4.7798 -1.3670 28 7 1.6773 2.3690 -0.9305 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.3220 1.3992 1.7279 35 1 4.7772 1.6727 1.7464 36 1 4.8284 2.1874 3.4595 37 1 8.3669 1.3193 3.4924 38 1 6.9404 1.6697 4.4977 39 1 6.8998 0.3239 3.3335 40 1 6.4229 1.3110 0.5270 41 1 8.1152 1.2594 1.0980 42 1 9.2491 5.9189 -1.3610 43 1 9.0457 3.9965 1.4366 44 1 7.7105 5.0991 0.9959 45 1 9.0130 3.2546 3.7495 46 1 8.4581 4.9354 3.9361 47 1 7.5819 3.6140 4.7449 48 1 6.0810 5.5366 2.2264 49 1 5.6851 4.7321 3.7751 50 1 2.9788 4.8136 -2.1361 51 1 1.2256 4.8642 -1.8331 52 1 2.3514 5.6064 -0.6712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982606262.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:17 Heat of formation + Delta-G solvation = 57.697599 kcal Electronic energy + Delta-G solvation = -33311.025237 eV Core-core repulsion = 29312.399074 eV Total energy + Delta-G solvation = -3998.626162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54078 -41.51395 -39.35015 -36.41706 -35.69809 -34.60652 -33.31346 -32.49153 -32.33472 -31.10275 -28.90572 -28.18177 -27.42130 -26.84761 -26.49472 -24.61662 -23.85508 -22.83236 -21.64062 -21.29112 -20.10882 -19.15789 -18.84917 -17.78191 -17.37401 -16.95976 -16.81181 -16.50440 -16.28142 -15.63112 -15.43195 -15.33572 -14.83953 -14.78880 -14.68611 -14.36271 -14.25906 -14.11733 -13.92016 -13.61759 -13.48858 -13.31441 -13.17423 -13.13610 -12.89662 -12.84091 -12.79550 -12.69722 -12.49669 -12.40481 -12.32092 -12.08651 -11.91357 -11.79229 -11.74184 -11.41408 -11.11355 -11.03888 -10.81063 -10.70443 -10.33269 -9.77448 -9.41429 -8.75490 -7.91768 -5.24749 0.57433 1.10911 1.33537 1.38374 1.42258 1.43770 2.06721 2.43556 2.53077 3.28237 3.31784 3.47870 3.62274 3.66173 3.76566 3.93500 3.96336 4.09079 4.14274 4.19784 4.27748 4.37575 4.41479 4.46386 4.48919 4.56986 4.64071 4.67399 4.74754 4.79454 4.82229 4.87645 4.89471 4.91662 4.95182 4.98298 5.02473 5.14547 5.21629 5.24294 5.29276 5.36672 5.39161 5.47121 5.49010 5.50690 5.57194 5.68918 5.85990 5.95654 6.23515 6.53913 6.76387 7.07891 7.33338 7.77235 8.48402 9.20889 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008756 B = 0.005341 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.103300 B = 5241.381423 C = 6797.201455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.352 5.352 4 C 0.110 3.890 5 C -0.306 4.306 6 C 0.610 3.390 7 O -0.598 6.598 8 N -0.608 5.608 9 C 0.102 3.898 10 C -0.073 4.073 11 C -0.117 4.117 12 C 0.140 3.860 13 N -0.608 5.608 14 C -0.222 4.222 15 H 0.063 0.937 16 C -0.057 4.057 17 N -0.942 5.942 18 Si 0.956 3.044 19 H -0.297 1.297 20 H -0.288 1.288 21 H -0.269 1.269 22 C 0.194 3.806 23 C -0.087 4.087 24 C -0.115 4.115 25 C 0.128 3.872 26 C 0.107 3.893 27 C -0.076 4.076 28 N -0.319 5.319 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.230 0.770 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.016 0.984 42 H 0.245 0.755 43 H -0.009 1.009 44 H 0.020 0.980 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.093 0.907 48 H 0.032 0.968 49 H 0.097 0.903 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 -15.371 13.480 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.004 4.004 3 N -0.131 5.131 4 C -0.042 4.042 5 C -0.321 4.321 6 C 0.402 3.598 7 O -0.480 6.480 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.075 4.075 11 C -0.175 4.175 12 C 0.015 3.985 13 N -0.332 5.332 14 C -0.352 4.352 15 H 0.081 0.919 16 C -0.251 4.251 17 N -0.590 5.590 18 Si 0.786 3.214 19 H -0.224 1.224 20 H -0.214 1.214 21 H -0.193 1.193 22 C 0.068 3.932 23 C -0.089 4.089 24 C -0.173 4.173 25 C 0.005 3.995 26 C -0.059 4.059 27 C -0.135 4.135 28 N -0.141 5.141 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.246 0.754 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.034 0.966 42 H 0.054 0.946 43 H 0.008 0.992 44 H 0.038 0.962 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.112 0.888 48 H 0.051 0.949 49 H 0.115 0.885 50 H 0.082 0.918 51 H 0.110 0.890 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.520 -15.343 12.303 23.866 hybrid contribution 1.032 1.563 -1.401 2.339 sum -12.488 -13.780 10.901 21.557 Atomic orbital electron populations 1.22015 0.93017 1.04338 1.02294 1.22329 0.96820 0.74773 1.06522 1.48917 1.33450 1.11284 1.19448 1.23988 0.91941 0.92232 0.96049 1.20183 1.11706 0.95884 1.04353 1.17124 0.79052 0.86822 0.76813 1.90658 1.72850 1.18787 1.65736 1.48489 1.28570 1.10281 1.46463 1.23109 0.94761 0.82381 1.01664 1.22324 0.94652 0.94697 0.95873 1.21637 1.01063 0.98017 0.96759 1.21611 0.96893 0.88457 0.91572 1.44477 1.77121 1.08892 1.02688 1.19060 1.22454 1.09845 0.83816 0.91941 1.25510 0.98523 0.99820 1.01208 1.70089 1.32722 1.19953 1.36282 0.85381 0.76668 0.78050 0.81318 1.22426 1.21396 1.19327 1.20950 0.93224 0.92813 0.86209 1.22483 0.94873 0.95018 0.96538 1.21586 0.98812 1.01587 0.95269 1.22307 0.86553 0.93932 0.96664 1.22497 0.93652 0.95527 0.94224 1.20251 1.02981 0.90948 0.99313 1.76991 1.25388 0.96987 1.14774 0.87605 0.92461 0.93422 0.88832 0.84149 0.75445 0.89392 0.86535 0.92613 0.89440 0.90363 0.94332 0.96633 0.94579 0.99150 0.96180 0.91939 0.93446 0.88832 0.94919 0.88519 0.91828 0.89016 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.09 71.98 0.73 -1.18 16 2 C 0.11 1.47 7.21 86.38 0.62 2.10 16 3 N -0.35 -8.54 3.65 -346.29 -1.26 -9.81 16 4 C 0.11 2.74 9.71 84.27 0.82 3.55 16 5 C -0.31 -11.00 6.00 -20.15 -0.12 -11.12 16 6 C 0.61 25.43 7.85 86.67 0.68 26.11 16 7 O -0.60 -29.91 15.38 -4.03 -0.06 -29.97 16 8 N -0.61 -21.31 3.31 -812.28 -2.69 -24.00 16 9 C 0.10 2.43 5.04 86.51 0.44 2.87 16 10 C -0.07 -2.00 1.08 -50.77 -0.05 -2.06 16 11 C -0.12 -1.99 7.54 71.98 0.54 -1.45 16 12 C 0.14 5.35 6.30 86.50 0.54 5.90 16 13 N -0.61 -31.26 3.38 -694.93 -2.35 -33.61 16 14 C -0.22 -13.03 10.28 84.03 0.86 -12.17 16 15 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 16 C -0.06 -3.43 5.41 84.86 0.46 -2.97 16 17 N -0.94 -59.74 10.88 21.65 0.24 -59.51 16 18 Si 0.96 49.62 29.56 68.60 2.03 51.65 16 19 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 20 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 21 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 22 C 0.19 9.57 4.68 86.60 0.41 9.97 16 23 C -0.09 -2.92 1.08 -50.68 -0.05 -2.98 16 24 C -0.11 -2.89 7.59 71.98 0.55 -2.34 16 25 C 0.13 4.52 6.05 86.51 0.52 5.05 16 26 C 0.11 3.99 7.26 43.51 0.32 4.31 16 27 C -0.08 -2.78 10.14 71.24 0.72 -2.06 16 28 N -0.32 -10.44 12.33 -46.68 -0.58 -11.01 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.14 0.65 8.06 -2.38 -0.02 0.63 16 34 H 0.23 3.44 5.36 -2.91 -0.02 3.43 16 35 H 0.09 1.92 3.83 -2.39 -0.01 1.92 16 36 H 0.12 1.69 7.97 -2.39 -0.02 1.67 16 37 H 0.05 1.07 7.20 -2.39 -0.02 1.06 16 38 H 0.09 1.02 7.21 -2.39 -0.02 1.00 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.04 1.43 7.38 -2.38 -0.02 1.41 16 41 H 0.02 0.61 7.89 -2.39 -0.02 0.59 16 42 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 43 H -0.01 -0.51 7.93 -2.39 -0.02 -0.53 16 44 H 0.02 1.18 6.14 -2.39 -0.01 1.17 16 45 H 0.06 1.56 7.18 -2.39 -0.02 1.54 16 46 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 47 H 0.09 1.60 7.21 -2.39 -0.02 1.58 16 48 H 0.03 1.47 7.24 -2.39 -0.02 1.45 16 49 H 0.10 2.64 7.96 -2.39 -0.02 2.62 16 50 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 51 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 52 H 0.08 3.11 6.40 -2.39 -0.02 3.10 16 Total: -1.00 -89.00 399.35 4.22 -84.78 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.92 Total: 9.96 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 7.98 Total: 21.52 kcal Atomic # 7 Polarization: -131.29 SS G_CDS: -6.64 Total: -137.94 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.06 Total: -29.97 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.03 Total: 51.65 kcal Total: -89.00 4.22 -84.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982606262.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.481 kcal (2) G-P(sol) polarization free energy of solvation -88.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds