Wall clock time and date at job start Wed Apr 1 2020 04:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47307 * 2 1 4 4 C 1.34265 * 125.75403 * 125.33949 * 3 2 1 5 5 C 1.38043 * 107.41732 * 180.16129 * 4 3 2 6 6 C 1.47424 * 126.41371 * 179.83797 * 5 4 3 7 7 O 1.21609 * 119.99936 * 224.09102 * 6 5 4 8 8 N 1.34773 * 120.00075 * 44.37160 * 6 5 4 9 9 C 1.46928 * 120.63073 * 4.61911 * 8 6 5 10 10 C 1.53628 * 108.54292 * 126.36860 * 9 8 6 11 11 C 1.53040 * 109.24205 * 54.85801 * 10 9 8 12 12 N 1.46492 * 109.45089 * 178.49715 * 11 10 9 13 13 C 1.46497 * 120.00018 * 60.05928 * 12 11 10 14 14 C 1.36941 * 120.00082 * 240.06110 * 12 11 10 15 15 H 1.07999 * 119.99733 * 23.59188 * 14 12 11 16 16 C 1.38813 * 120.00116 * 203.58847 * 14 12 11 17 17 N 1.31612 * 119.99950 * 15.54305 * 16 14 12 18 18 Si 1.86794 * 119.99940 * 195.54743 * 16 14 12 19 19 H 1.48501 * 109.47473 * 89.99857 * 18 16 14 20 20 H 1.48494 * 109.47287 * 209.99661 * 18 16 14 21 21 H 1.48498 * 109.47376 * 329.99826 * 18 16 14 22 22 C 1.53046 * 109.53560 * 298.51185 * 11 10 9 23 23 C 1.46930 * 120.63048 * 184.89841 * 8 6 5 24 24 C 1.41295 * 107.16840 * 359.57805 * 5 4 3 25 25 C 1.50700 * 125.98474 * 180.28433 * 24 5 4 26 26 C 1.53001 * 117.49529 * 188.74404 * 25 24 5 27 27 C 1.53002 * 117.49849 * 120.08903 * 25 24 5 28 28 N 1.30450 * 108.02385 * 0.26106 * 24 5 4 29 29 H 1.08995 * 109.47611 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46627 * 299.99888 * 1 2 3 31 31 H 1.09002 * 109.47461 * 59.99496 * 1 2 3 32 32 H 1.09005 * 109.46627 * 240.00112 * 2 1 3 33 33 H 1.09002 * 109.47461 * 120.00504 * 2 1 3 34 34 H 1.08000 * 126.29070 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.58555 * 246.20241 * 9 8 6 36 36 H 1.08992 * 109.58491 * 6.62732 * 9 8 6 37 37 H 1.09000 * 109.63412 * 294.86429 * 10 9 8 38 38 H 1.08995 * 109.42507 * 174.72180 * 10 9 8 39 39 H 1.09002 * 109.46147 * 58.52422 * 11 10 9 40 40 H 1.08995 * 109.47157 * 90.43119 * 13 12 11 41 41 H 1.09008 * 109.46939 * 210.42862 * 13 12 11 42 42 H 1.08997 * 109.47317 * 330.42574 * 13 12 11 43 43 H 0.96999 * 120.00305 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.49220 * 301.40792 * 22 11 10 45 45 H 1.08998 * 109.49580 * 181.31861 * 22 11 10 46 46 H 1.08997 * 109.58721 * 353.37145 * 23 8 6 47 47 H 1.09000 * 109.58277 * 113.65595 * 23 8 6 48 48 H 1.08995 * 115.55068 * 334.41140 * 25 24 5 49 49 H 1.08998 * 117.50330 * 0.02562 * 26 25 24 50 50 H 1.09011 * 117.49756 * 145.01798 * 26 25 24 51 51 H 1.09001 * 117.49780 * 214.97394 * 27 25 24 52 52 H 1.08996 * 117.49854 * 359.97146 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8741 1.9107 0.8888 5 6 3.0712 3.2308 0.5367 6 6 3.9329 4.2031 1.2335 7 8 3.5317 5.3323 1.4407 8 7 5.1676 3.8423 1.6359 9 6 5.7073 2.5178 1.2995 10 6 7.0688 2.7051 0.6129 11 6 7.9776 3.5431 1.5151 12 7 9.2894 3.6943 0.8808 13 6 9.3993 4.3406 -0.4293 14 6 10.4128 3.2315 1.5124 15 1 10.3329 2.4475 2.2509 16 6 11.6544 3.7700 1.2034 17 7 11.7332 4.9096 0.5498 18 14 13.2133 2.8771 1.7152 19 1 13.6262 1.9439 0.6363 20 1 14.2945 3.8663 1.9546 21 1 12.9585 2.1110 2.9615 22 6 7.3530 4.9236 1.7301 23 6 5.9970 4.7637 2.4246 24 6 2.2972 3.4740 -0.6201 25 6 2.2054 4.7805 -1.3656 26 6 1.1543 4.8901 -2.4720 27 6 2.6383 4.7883 -2.8331 28 7 1.6763 2.3693 -0.9299 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3237 1.3986 1.7267 35 1 5.8317 1.9318 2.2102 36 1 5.0230 2.0054 0.6234 37 1 6.9312 3.2159 -0.3401 38 1 7.5254 1.7303 0.4413 39 1 8.0947 3.0438 2.4770 40 1 9.5514 5.4114 -0.2946 41 1 10.2452 3.9190 -0.9726 42 1 8.4834 4.1720 -0.9956 43 1 12.6008 5.2861 0.3342 44 1 7.2129 5.4135 0.7666 45 1 8.0120 5.5279 2.3536 46 1 5.5038 5.7334 2.4910 47 1 6.1424 4.3583 3.4259 48 1 2.4102 5.6738 -0.7756 49 1 0.5289 4.0175 -2.6603 50 1 0.6678 5.8558 -2.6101 51 1 3.1276 5.6871 -3.2087 52 1 2.9899 3.8487 -3.2591 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985448750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:14 Heat of formation + Delta-G solvation = 74.365645 kcal Electronic energy + Delta-G solvation = -31431.068870 eV Core-core repulsion = 27433.165489 eV Total energy + Delta-G solvation = -3997.903382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.56676 -40.74191 -38.81404 -38.12021 -36.62531 -35.11989 -33.93754 -32.50189 -31.49988 -31.15722 -30.34847 -28.01614 -26.56003 -25.66422 -24.59386 -24.10621 -23.31167 -23.13522 -22.54682 -21.28267 -20.37933 -19.64176 -18.73156 -18.23871 -17.65612 -16.93044 -16.74058 -16.68059 -16.35920 -15.82786 -15.70851 -15.62691 -15.11787 -15.09974 -14.89290 -14.61812 -14.48005 -14.15320 -13.89416 -13.67698 -13.43326 -13.15933 -13.10249 -13.03518 -12.82179 -12.78800 -12.61821 -12.47924 -12.43618 -12.34056 -12.19011 -12.03356 -11.83320 -11.81622 -11.73569 -11.57375 -11.33776 -11.19965 -10.85186 -10.58576 -10.14977 -9.70333 -9.44928 -8.73670 -7.80683 -5.27524 0.63191 1.09285 1.41553 1.48629 1.49813 1.58455 1.92277 2.28449 2.53526 2.98324 3.28614 3.33227 3.55054 3.63575 3.81739 3.90638 3.93956 3.98356 4.07920 4.10583 4.14874 4.22188 4.24410 4.39348 4.40702 4.42408 4.50102 4.59097 4.65353 4.72567 4.75829 4.81554 4.82132 4.86514 4.89062 4.94403 4.94960 5.03276 5.13337 5.15833 5.22328 5.22952 5.23875 5.39658 5.45313 5.53274 5.62698 5.69489 5.70958 5.96357 6.36639 6.47035 6.61627 7.17413 7.24164 7.90783 8.37232 9.23923 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.002648 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.687115 B =10572.520807 C =11185.042333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.117 3.883 3 N -0.352 5.352 4 C 0.116 3.884 5 C -0.306 4.306 6 C 0.596 3.404 7 O -0.587 6.587 8 N -0.601 5.601 9 C 0.115 3.885 10 C -0.134 4.134 11 C 0.175 3.825 12 N -0.609 5.609 13 C 0.183 3.817 14 C -0.258 4.258 15 H 0.077 0.923 16 C -0.056 4.056 17 N -0.941 5.941 18 Si 0.967 3.033 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.264 1.264 22 C -0.132 4.132 23 C 0.126 3.874 24 C 0.140 3.860 25 C -0.109 4.109 26 C -0.146 4.146 27 C -0.157 4.157 28 N -0.312 5.312 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.223 0.777 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.069 0.931 40 H -0.008 1.008 41 H 0.017 0.983 42 H 0.022 0.978 43 H 0.246 0.754 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.114 0.886 51 H 0.109 0.891 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.850 -12.491 -0.559 26.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.002 4.002 3 N -0.130 5.130 4 C -0.036 4.036 5 C -0.321 4.321 6 C 0.386 3.614 7 O -0.468 6.468 8 N -0.333 5.333 9 C -0.007 4.007 10 C -0.174 4.174 11 C 0.068 3.932 12 N -0.331 5.331 13 C 0.037 3.963 14 C -0.389 4.389 15 H 0.095 0.905 16 C -0.251 4.251 17 N -0.587 5.587 18 Si 0.796 3.204 19 H -0.215 1.215 20 H -0.227 1.227 21 H -0.188 1.188 22 C -0.172 4.172 23 C 0.003 3.997 24 C -0.026 4.026 25 C -0.130 4.130 26 C -0.184 4.184 27 C -0.195 4.195 28 N -0.134 5.134 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.155 0.845 34 H 0.239 0.761 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.010 0.990 41 H 0.036 0.964 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.129 0.871 49 H 0.118 0.882 50 H 0.133 0.867 51 H 0.128 0.872 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.780 -12.601 -1.302 27.831 hybrid contribution 2.039 0.828 0.548 2.268 sum -22.741 -11.773 -0.754 25.619 Atomic orbital electron populations 1.22023 0.93505 1.04170 1.02215 1.22284 0.96420 0.74898 1.06591 1.48848 1.33535 1.11164 1.19465 1.23544 0.92334 0.92000 0.95715 1.20029 1.11825 0.95678 1.04561 1.17627 0.80858 0.86128 0.76835 1.90702 1.74925 1.22605 1.58545 1.48063 1.14286 1.17375 1.53557 1.22111 0.94176 0.83073 1.01337 1.22346 0.95381 1.00819 0.98880 1.20531 0.84063 0.93212 0.95357 1.44198 1.02597 1.68963 1.17373 1.20357 0.95420 0.94659 0.85844 1.19607 0.85816 1.13299 1.20139 0.90550 1.25804 1.01205 0.96597 1.01530 1.70253 1.23387 1.18788 1.46319 0.85257 0.79411 0.77446 0.78287 1.21520 1.22744 1.18833 1.22278 0.95666 0.99688 0.99579 1.21502 0.89484 0.94388 0.94345 1.21440 0.93555 0.93772 0.93810 1.20409 1.08655 0.92957 0.90931 1.23013 0.91644 1.04274 0.99435 1.23028 0.98313 1.03858 0.94269 1.76977 1.24524 0.96973 1.14894 0.87981 0.92873 0.93147 0.88298 0.84547 0.76055 0.88205 0.88261 0.93897 0.90416 0.91280 0.98996 0.96408 0.95948 0.94495 0.94577 0.92892 0.90715 0.89319 0.87084 0.88158 0.86739 0.87249 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.09 71.98 0.73 -0.59 16 2 C 0.12 0.87 7.21 86.38 0.62 1.50 16 3 N -0.35 -5.87 3.65 -346.29 -1.26 -7.14 16 4 C 0.12 1.95 9.12 84.27 0.77 2.72 16 5 C -0.31 -7.87 5.10 -20.15 -0.10 -7.97 16 6 C 0.60 18.39 7.40 86.66 0.64 19.03 16 7 O -0.59 -22.51 15.58 -4.06 -0.06 -22.57 16 8 N -0.60 -16.64 2.97 -821.93 -2.44 -19.08 16 9 C 0.12 2.54 5.65 86.51 0.49 3.03 16 10 C -0.13 -4.10 5.33 30.82 0.16 -3.93 16 11 C 0.18 6.64 2.55 45.02 0.11 6.76 16 12 N -0.61 -29.87 2.80 -702.64 -1.97 -31.84 16 13 C 0.18 9.26 8.08 127.77 1.03 10.29 16 14 C -0.26 -13.81 9.56 84.03 0.80 -13.01 16 15 H 0.08 3.87 7.84 -2.91 -0.02 3.85 16 16 C -0.06 -3.15 5.00 84.86 0.42 -2.72 16 17 N -0.94 -56.43 10.93 21.65 0.24 -56.19 16 18 Si 0.97 44.63 29.58 68.60 2.03 46.66 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 22 C -0.13 -4.91 5.34 30.67 0.16 -4.74 16 23 C 0.13 3.80 6.44 86.36 0.56 4.36 16 24 C 0.14 3.78 6.79 43.52 0.30 4.08 16 25 C -0.11 -2.88 6.01 -11.54 -0.07 -2.94 16 26 C -0.15 -2.99 10.14 30.62 0.31 -2.67 16 27 C -0.16 -3.46 10.24 30.62 0.31 -3.14 16 28 N -0.31 -7.41 11.92 -46.67 -0.56 -7.97 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.14 0.06 8.06 -2.39 -0.02 0.04 16 34 H 0.22 1.76 7.60 -2.91 -0.02 1.74 16 35 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.10 1.85 4.94 -2.39 -0.01 1.84 16 37 H 0.04 1.48 6.72 -2.39 -0.02 1.46 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.53 7.87 -2.39 -0.02 2.51 16 40 H -0.01 -0.47 7.60 -2.39 -0.02 -0.48 16 41 H 0.02 0.95 7.14 -2.38 -0.02 0.94 16 42 H 0.02 1.00 6.46 -2.39 -0.02 0.98 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.04 1.49 7.72 -2.39 -0.02 1.47 16 45 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.07 2.46 6.99 -2.39 -0.02 2.45 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.11 3.36 7.28 -2.39 -0.02 3.35 16 49 H 0.10 2.04 7.90 -2.39 -0.02 2.02 16 50 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 51 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.54 410.79 4.13 -72.41 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.90 Total: 15.69 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 7.25 Total: 10.03 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -5.99 Total: -122.22 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.06 Total: -22.57 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.54 4.13 -72.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985448750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.774 kcal (2) G-P(sol) polarization free energy of solvation -76.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds