Wall clock time and date at job start Wed Apr 1 2020 04:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47556 * 2 1 4 4 C 1.34952 * 126.03662 * 125.01702 * 3 2 1 5 5 C 1.35316 * 107.74600 * 179.75302 * 4 3 2 6 6 C 1.39864 * 107.91828 * 0.40147 * 5 4 3 7 7 C 1.50706 * 125.89999 * 179.86198 * 6 5 4 8 8 C 1.50695 * 109.47238 * 124.71248 * 7 6 5 9 9 O 1.21280 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.47320 * 125.73957 * 359.69447 * 10 8 7 12 12 C 1.55136 * 106.87235 * 179.91306 * 11 10 8 13 13 H 1.09002 * 112.30358 * 215.79760 * 12 11 10 14 14 C 1.52930 * 107.53004 * 92.21455 * 12 11 10 15 15 C 1.52249 * 110.24105 * 191.72179 * 14 12 11 16 16 C 1.51838 * 110.42658 * 61.75372 * 15 14 12 17 17 C 1.49991 * 113.13096 * 307.27196 * 16 15 14 18 18 H 1.09002 * 108.55980 * 164.16091 * 17 16 15 19 19 N 1.46501 * 107.16038 * 280.34431 * 17 16 15 20 20 C 1.36933 * 120.00111 * 281.65025 * 19 17 16 21 21 H 1.07998 * 120.00127 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99936 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99833 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00229 * 0.02562 * 22 20 19 25 25 H 1.48490 * 109.47448 * 89.99326 * 24 22 20 26 26 H 1.48506 * 109.46905 * 209.99972 * 24 22 20 27 27 H 1.48501 * 109.46765 * 329.99127 * 24 22 20 28 28 C 1.49693 * 116.76501 * 41.69644 * 17 16 15 29 29 H 1.08998 * 108.61434 * 198.54230 * 28 17 16 30 30 C 1.47811 * 125.74070 * 180.02562 * 10 8 7 31 31 N 1.30836 * 108.20352 * 359.59749 * 6 5 4 32 32 H 1.08995 * 109.47144 * 300.00199 * 1 2 3 33 33 H 1.09002 * 109.46985 * 59.99732 * 1 2 3 34 34 H 1.09000 * 109.47265 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47412 * 239.99832 * 2 1 3 36 36 H 1.09002 * 109.46985 * 120.00268 * 2 1 3 37 37 H 1.08002 * 126.12743 * 0.02562 * 4 3 2 38 38 H 1.07995 * 126.03881 * 180.27723 * 5 4 3 39 39 H 1.08997 * 109.47279 * 244.71797 * 7 6 5 40 40 H 1.08998 * 109.46666 * 4.71336 * 7 6 5 41 41 H 1.09005 * 109.98142 * 299.39463 * 11 10 8 42 42 H 1.09002 * 109.98303 * 60.67907 * 11 10 8 43 43 H 1.08997 * 109.34243 * 311.96069 * 14 12 11 44 44 H 1.09003 * 109.33947 * 71.49303 * 14 12 11 45 45 H 1.08998 * 109.31119 * 182.04034 * 15 14 12 46 46 H 1.09000 * 109.31617 * 301.65179 * 15 14 12 47 47 H 1.08995 * 108.78857 * 67.73346 * 16 15 14 48 48 H 1.09006 * 108.78371 * 186.05037 * 16 15 14 49 49 H 0.96997 * 119.99831 * 101.65144 * 19 17 16 50 50 H 0.97001 * 119.99569 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.51493 * 322.97377 * 30 10 8 52 52 H 1.09003 * 110.51352 * 85.55815 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8734 1.9209 0.8937 5 6 3.0764 3.2119 0.5428 6 6 2.3122 3.4725 -0.5993 7 6 2.2352 4.7885 -1.3297 8 6 2.5916 4.5803 -2.7790 9 8 2.8794 3.4723 -3.1796 10 7 2.5907 5.6253 -3.6301 11 6 2.2568 7.0176 -3.2828 12 6 2.3977 7.8521 -4.5830 13 1 2.7854 8.8528 -4.3923 14 6 1.0255 7.8897 -5.2572 15 6 1.1485 8.4398 -6.6715 16 6 2.0375 7.5422 -7.5138 17 6 3.3706 7.2726 -6.8815 18 1 3.8275 6.4207 -7.3851 19 7 4.2127 8.4451 -7.1315 20 6 4.7988 8.6184 -8.3569 21 1 4.6399 7.8910 -9.1392 22 6 5.5962 9.7296 -8.5939 23 7 6.1591 9.8964 -9.7719 24 14 5.8703 10.9882 -7.2411 25 1 7.0661 10.6087 -6.4468 26 1 6.0829 12.3275 -7.8467 27 1 4.6797 11.0293 -6.3546 28 6 3.3760 7.0010 -5.4094 29 1 4.3872 7.1514 -5.0315 30 6 2.9177 5.5662 -5.0703 31 7 1.6802 2.3749 -0.9275 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.3197 1.4122 1.7355 38 1 3.7139 3.9170 1.0552 39 1 1.2225 5.1852 -1.2579 40 1 2.9345 5.4942 -0.8813 41 1 1.2337 7.0736 -2.9110 42 1 2.9488 7.3892 -2.5271 43 1 0.6149 6.8808 -5.2966 44 1 0.3566 8.5271 -4.6789 45 1 0.1585 8.4940 -7.1245 46 1 1.5825 9.4389 -6.6333 47 1 1.5308 6.5893 -7.6659 48 1 2.1946 8.0143 -8.4837 49 1 4.3550 9.0986 -6.4290 50 1 6.7166 10.6728 -9.9374 51 1 3.7241 4.8552 -5.2501 52 1 2.0357 5.2970 -5.6516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992700452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:36 Heat of formation + Delta-G solvation = 31.922034 kcal Electronic energy + Delta-G solvation = -30773.046233 eV Core-core repulsion = 26773.302358 eV Total energy + Delta-G solvation = -3999.743875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.15898 -41.60732 -39.79918 -37.17261 -35.58188 -35.19905 -33.46018 -32.87695 -31.73956 -31.21510 -30.61565 -29.09374 -27.95212 -26.06861 -24.57575 -23.82578 -23.35460 -22.31659 -21.99129 -21.10233 -19.96735 -19.80888 -19.11535 -18.02887 -17.83533 -17.30007 -16.63241 -16.42957 -16.20558 -16.10607 -15.61431 -15.36964 -15.17257 -15.00802 -14.88541 -14.57711 -14.39732 -14.26393 -14.08224 -13.90235 -13.61293 -13.51810 -13.25381 -13.06810 -12.94101 -12.88549 -12.85694 -12.69897 -12.57036 -12.34812 -12.22635 -12.08894 -11.92173 -11.76885 -11.41801 -11.30114 -11.24470 -10.91702 -10.88178 -10.73000 -10.16003 -9.61383 -9.42146 -9.25396 -7.97962 -5.30378 1.04152 1.39112 1.44118 1.51342 1.65698 1.68931 1.75527 2.17561 2.52465 3.29201 3.35844 3.49968 3.51009 3.68476 3.84823 3.87922 4.00606 4.06975 4.11971 4.20398 4.25232 4.30803 4.34906 4.36623 4.41883 4.51513 4.52513 4.64425 4.67777 4.69738 4.78768 4.81045 4.84143 4.89146 4.90375 4.92673 4.96701 5.07397 5.14025 5.16212 5.21836 5.27135 5.28622 5.41676 5.50632 5.64426 5.68430 5.75255 5.83421 6.25559 6.25801 6.57052 6.86748 7.12922 7.20198 7.88295 8.09993 9.24009 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.002165 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.370504 B =12927.600599 C =13206.672924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 N -0.381 5.381 4 C 0.052 3.948 5 C -0.283 4.283 6 C 0.061 3.939 7 C -0.045 4.045 8 C 0.525 3.475 9 O -0.582 6.582 10 N -0.617 5.617 11 C 0.103 3.897 12 C -0.088 4.088 13 H 0.104 0.896 14 C -0.102 4.102 15 C -0.106 4.106 16 C -0.123 4.123 17 C 0.195 3.805 18 H 0.023 0.977 19 N -0.749 5.749 20 C -0.221 4.221 21 H 0.050 0.950 22 C -0.071 4.071 23 N -0.989 5.989 24 Si 0.956 3.044 25 H -0.282 1.282 26 H -0.301 1.301 27 H -0.242 1.242 28 C -0.088 4.088 29 H 0.071 0.929 30 C 0.123 3.877 31 N -0.314 5.314 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.133 0.867 37 H 0.212 0.788 38 H 0.168 0.832 39 H 0.130 0.870 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.365 0.635 50 H 0.255 0.745 51 H 0.052 0.948 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.195 -12.868 29.510 35.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 N -0.165 5.165 4 C -0.093 4.093 5 C -0.313 4.313 6 C -0.106 4.106 7 C -0.086 4.086 8 C 0.315 3.685 9 O -0.461 6.461 10 N -0.351 5.351 11 C -0.018 4.018 12 C -0.107 4.107 13 H 0.122 0.878 14 C -0.140 4.140 15 C -0.143 4.143 16 C -0.162 4.162 17 C 0.087 3.913 18 H 0.041 0.959 19 N -0.394 5.394 20 C -0.352 4.352 21 H 0.068 0.932 22 C -0.261 4.261 23 N -0.640 5.640 24 Si 0.784 3.216 25 H -0.208 1.208 26 H -0.228 1.228 27 H -0.166 1.166 28 C -0.108 4.108 29 H 0.090 0.910 30 C -0.001 4.001 31 N -0.137 5.137 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.229 0.771 38 H 0.186 0.814 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.199 0.801 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.866 -14.319 28.347 35.066 hybrid contribution 1.433 1.018 -0.118 1.762 sum -13.433 -13.300 28.229 33.974 Atomic orbital electron populations 1.21983 0.93687 1.03840 1.02015 1.21981 0.96306 0.76451 1.05104 1.49055 1.36013 1.10735 1.20655 1.23202 0.94695 0.94819 0.96617 1.21710 1.09821 0.98063 1.01657 1.21994 0.97703 0.94525 0.96371 1.20097 1.06720 0.93323 0.88493 1.20713 0.76624 0.82700 0.88498 1.90724 1.50412 1.25593 1.79381 1.48674 1.68008 1.09317 1.09057 1.22641 1.03008 0.78730 0.97438 1.22163 0.95767 0.99053 0.93720 0.87772 1.21419 0.95728 1.01739 0.95074 1.20968 0.98753 0.98713 0.95913 1.21159 0.96319 0.99432 0.99326 1.18934 0.90635 0.88682 0.93042 0.95869 1.42893 1.58899 1.25857 1.11702 1.18960 1.21009 1.04966 0.90252 0.93206 1.25528 1.00399 1.01053 0.99151 1.69907 1.38668 1.31313 1.24115 0.85383 0.78999 0.78031 0.79229 1.20824 1.22774 1.16634 1.21356 1.00261 0.94537 0.94633 0.91032 1.22012 0.99754 0.96561 0.81754 1.77295 1.25332 0.97636 1.13473 0.92186 0.94001 0.88383 0.90684 0.84932 0.77128 0.81414 0.85216 0.83892 0.88026 0.88762 0.91926 0.89117 0.91376 0.93271 0.92745 0.94339 0.80114 0.93599 0.92929 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.10 71.98 0.73 -1.15 16 2 C 0.12 1.51 7.23 86.38 0.62 2.13 16 3 N -0.38 -7.64 3.68 -348.06 -1.28 -8.93 16 4 C 0.05 0.80 11.45 83.54 0.96 1.76 16 5 C -0.28 -5.07 10.72 21.99 0.24 -4.83 16 6 C 0.06 1.41 6.02 43.10 0.26 1.67 16 7 C -0.05 -0.81 5.48 29.10 0.16 -0.65 16 8 C 0.53 14.11 7.84 87.66 0.69 14.79 16 9 O -0.58 -21.95 15.83 -3.03 -0.05 -22.00 16 10 N -0.62 -14.51 3.34 -809.45 -2.70 -17.21 16 11 C 0.10 1.60 5.92 86.95 0.51 2.11 16 12 C -0.09 -1.82 3.48 -9.83 -0.03 -1.86 16 13 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.10 -2.02 4.74 30.32 0.14 -1.87 16 15 C -0.11 -2.82 5.90 29.96 0.18 -2.64 16 16 C -0.12 -4.17 5.34 29.24 0.16 -4.01 16 17 C 0.19 7.18 2.35 42.96 0.10 7.28 16 18 H 0.02 0.97 7.98 -2.39 -0.02 0.95 16 19 N -0.75 -33.68 4.75 -332.68 -1.58 -35.26 16 20 C -0.22 -12.52 9.80 84.03 0.82 -11.70 16 21 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 22 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 23 N -0.99 -64.13 13.97 21.65 0.30 -63.83 16 24 Si 0.96 44.92 27.74 68.60 1.90 46.83 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 27 H -0.24 -9.87 6.52 99.48 0.65 -9.22 16 28 C -0.09 -2.53 2.20 -11.12 -0.02 -2.55 16 29 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 30 C 0.12 3.49 5.86 86.60 0.51 4.00 16 31 N -0.31 -8.69 11.76 -47.38 -0.56 -9.24 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.13 0.56 8.07 -2.39 -0.02 0.54 16 37 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.14 1.55 8.12 -2.39 -0.02 1.53 16 41 H 0.10 1.04 7.78 -2.38 -0.02 1.02 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.25 7.04 -2.39 -0.02 1.24 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 1.59 7.52 -2.38 -0.02 1.57 16 49 H 0.37 15.46 5.59 -92.71 -0.52 14.94 16 50 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 51 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 52 H 0.07 1.97 7.47 -2.39 -0.02 1.95 16 Total: -1.00 -86.15 409.45 2.84 -83.31 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.32 Total: 27.55 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 6.48 Total: -1.22 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -5.82 Total: -134.47 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.83 kcal Total: -86.15 2.84 -83.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992700452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.235 kcal (2) G-P(sol) polarization free energy of solvation -86.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds