Wall clock time and date at job start Wed Apr 1 2020 04:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47094 * 2 1 4 4 N 1.28440 * 125.19005 * 264.80411 * 3 2 1 5 5 C 1.30867 * 110.92708 * 180.16305 * 4 3 2 6 6 C 1.50706 * 126.06825 * 179.87756 * 5 4 3 7 7 C 1.39666 * 107.86054 * 359.61474 * 5 4 3 8 8 C 1.36598 * 125.18876 * 84.54052 * 3 2 1 9 9 C 1.47164 * 126.88656 * 359.97334 * 8 3 2 10 10 O 1.21626 * 119.99756 * 6.29625 * 9 8 3 11 11 N 1.34776 * 119.99906 * 186.29097 * 9 8 3 12 12 C 1.48658 * 125.78413 * 5.35736 * 11 9 8 13 13 C 1.53298 * 103.32616 * 155.53994 * 12 11 9 14 14 H 1.09000 * 110.76060 * 284.62048 * 13 12 11 15 15 C 1.51616 * 117.39637 * 156.42820 * 13 12 11 16 16 C 1.53817 * 107.01915 * 183.50305 * 15 13 12 17 17 C 1.52533 * 111.69935 * 57.54181 * 16 15 13 18 18 C 1.51896 * 112.20608 * 306.63929 * 17 16 15 19 19 H 1.08997 * 108.49669 * 296.67407 * 18 17 16 20 20 N 1.46504 * 110.38552 * 176.08083 * 18 17 16 21 21 C 1.36938 * 119.99694 * 85.90038 * 20 18 17 22 22 H 1.07999 * 120.00274 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99880 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00127 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99733 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46860 * 90.00608 * 25 23 21 27 27 H 1.48499 * 109.46923 * 210.00058 * 25 23 21 28 28 H 1.48497 * 109.47425 * 330.00789 * 25 23 21 29 29 C 1.51440 * 108.04795 * 55.83749 * 18 17 16 30 30 H 1.08995 * 109.88053 * 55.85130 * 29 18 17 31 31 C 1.48244 * 125.78405 * 185.65852 * 11 9 8 32 32 H 1.09001 * 109.47116 * 56.76010 * 1 2 3 33 33 H 1.08995 * 109.47467 * 176.76323 * 1 2 3 34 34 H 1.09005 * 109.46913 * 296.76453 * 1 2 3 35 35 H 1.08999 * 109.46743 * 239.99890 * 2 1 3 36 36 H 1.08998 * 109.46576 * 119.99810 * 2 1 3 37 37 H 1.09000 * 109.46899 * 269.69260 * 6 5 4 38 38 H 1.09000 * 109.46626 * 149.68667 * 6 5 4 39 39 H 1.08997 * 109.47142 * 29.68954 * 6 5 4 40 40 H 1.08000 * 127.32423 * 180.24986 * 7 5 4 41 41 H 1.09001 * 110.62680 * 274.12054 * 12 11 9 42 42 H 1.08999 * 110.63003 * 37.14050 * 12 11 9 43 43 H 1.09001 * 109.94657 * 302.88108 * 15 13 12 44 44 H 1.08993 * 109.94324 * 64.04323 * 15 13 12 45 45 H 1.09004 * 109.03624 * 178.10967 * 16 15 13 46 46 H 1.08997 * 109.03716 * 297.04515 * 16 15 13 47 47 H 1.08999 * 109.04245 * 66.51479 * 17 16 15 48 48 H 1.09002 * 109.04067 * 185.46494 * 17 16 15 49 49 H 0.96993 * 119.99851 * 265.89163 * 20 18 17 50 50 H 0.96989 * 120.00119 * 179.97438 * 24 23 21 51 51 H 1.08998 * 110.17089 * 295.90533 * 31 11 9 52 52 H 1.09003 * 110.16811 * 57.62822 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3547 2.0474 -1.0454 5 6 2.7532 3.2518 -0.7240 6 6 3.2255 4.3152 -1.6817 7 6 2.6574 3.3786 0.6636 8 6 2.1806 2.1588 1.1113 9 6 1.9035 1.7763 2.5051 10 8 1.5940 0.6306 2.7713 11 7 1.9929 2.6957 3.4866 12 6 2.2489 4.1477 3.2969 13 6 1.6442 4.7805 4.5555 14 1 0.5561 4.7992 4.4940 15 6 2.1755 6.1359 4.9789 16 6 1.4771 6.5005 6.3000 17 6 1.7141 5.4433 7.3737 18 6 1.3397 4.0496 6.8996 19 1 0.2698 4.0306 6.6924 20 7 1.6691 3.0562 7.9248 21 6 0.7752 2.7826 8.9254 22 1 -0.1725 3.2995 8.9590 23 6 1.0875 1.8417 9.8970 24 7 0.2285 1.5792 10.8591 25 14 2.7269 0.9482 9.8391 26 1 3.7365 1.7159 10.6117 27 1 2.5744 -0.4049 10.4316 28 1 3.1733 0.8236 8.4283 29 6 2.1165 3.7607 5.6321 30 1 3.1839 3.8826 5.8157 31 6 1.8587 2.4292 4.9387 32 1 -0.3633 0.5633 -0.8595 33 1 -0.3634 -1.0260 -0.0580 34 1 -0.3633 0.4628 0.9176 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 4.3041 4.2311 -1.8148 38 1 2.9846 5.2992 -1.2795 39 1 2.7295 4.1843 -2.6434 40 1 2.9027 4.2446 1.2605 41 1 3.3195 4.3448 3.2415 42 1 1.7433 4.5132 2.4030 43 1 3.2535 6.0819 5.1308 44 1 1.9444 6.8803 4.2171 45 1 1.8611 7.4577 6.6529 46 1 0.4055 6.5912 6.1225 47 1 2.7705 5.4396 7.6421 48 1 1.1242 5.6935 8.2555 49 1 2.5203 2.5922 7.8946 50 1 0.4466 0.9215 11.5377 51 1 0.8525 2.0763 5.1647 52 1 2.5954 1.6907 5.2549 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992822462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:42 Heat of formation + Delta-G solvation = 58.250056 kcal Electronic energy + Delta-G solvation = -31637.259392 eV Core-core repulsion = 27638.657186 eV Total energy + Delta-G solvation = -3998.602206 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.77363 -40.47070 -38.60737 -35.98098 -34.94616 -34.13504 -31.98791 -31.61255 -31.43885 -30.22720 -29.29840 -27.67394 -27.07399 -25.43337 -23.74420 -23.09034 -22.24624 -21.56667 -20.64342 -20.36343 -19.86209 -19.00199 -17.70939 -17.21584 -16.65357 -16.23274 -15.78938 -15.34439 -15.09329 -14.81452 -14.47936 -14.33167 -14.12820 -13.93764 -13.74146 -13.48844 -13.33858 -13.10396 -12.84714 -12.70946 -12.62178 -12.59883 -12.49717 -12.30845 -12.16460 -12.03657 -11.54470 -11.48684 -11.32620 -11.04685 -10.91001 -10.83068 -10.65820 -10.37665 -10.31952 -10.09626 -10.00819 -9.77848 -9.56934 -9.29490 -9.06935 -8.94420 -8.70501 -7.30839 -5.78651 -3.14811 1.11780 2.12278 2.35110 2.89163 3.09122 3.36797 3.39430 3.45305 4.09759 4.23313 4.33035 4.57697 4.64707 4.67833 4.73714 4.75842 4.88495 5.02388 5.08710 5.11830 5.22389 5.24866 5.33237 5.35901 5.38677 5.39371 5.43951 5.47156 5.50167 5.54832 5.60248 5.67612 5.73531 5.75943 5.77326 5.83836 5.85814 5.96772 6.01644 6.05683 6.17480 6.31616 6.32556 6.34937 6.43404 6.51512 6.57801 6.77287 6.95125 7.33927 7.85398 7.96538 8.01302 8.40196 9.18038 9.90620 10.09535 11.39646 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012599 B = 0.003096 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.846587 B = 9040.760148 C =10605.808017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.255 5.255 4 N -0.278 5.278 5 C 0.018 3.982 6 C -0.065 4.065 7 C -0.199 4.199 8 C -0.026 4.026 9 C 0.600 3.400 10 O -0.539 6.539 11 N -0.605 5.605 12 C 0.100 3.900 13 C -0.106 4.106 14 H 0.088 0.912 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.201 3.799 19 H 0.057 0.943 20 N -0.747 5.747 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 C -0.108 4.108 30 H 0.078 0.922 31 C 0.127 3.873 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.169 0.831 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.081 0.919 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 8.045 -24.385 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.042 5.042 4 N -0.112 5.112 5 C -0.138 4.138 6 C -0.124 4.124 7 C -0.227 4.227 8 C -0.154 4.154 9 C 0.388 3.612 10 O -0.417 6.417 11 N -0.338 5.338 12 C -0.022 4.022 13 C -0.125 4.125 14 H 0.106 0.894 15 C -0.138 4.138 16 C -0.152 4.152 17 C -0.178 4.178 18 C 0.091 3.909 19 H 0.075 0.925 20 N -0.388 5.388 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.581 5.581 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.128 4.128 30 H 0.097 0.903 31 C 0.006 3.994 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.186 0.814 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.194 0.806 50 H 0.070 0.930 51 H 0.099 0.901 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.036 6.442 -25.018 26.320 hybrid contribution 1.314 -0.260 0.899 1.613 sum 6.350 6.182 -24.120 25.696 Atomic orbital electron populations 1.22090 0.93375 1.03581 1.03141 1.22173 0.96245 0.76481 1.05705 1.45774 1.44304 1.12245 1.01892 1.73104 1.17612 1.06787 1.13717 1.22027 1.04372 0.93449 0.93981 1.20071 1.01092 0.94320 0.96883 1.22588 1.07280 0.97840 0.95033 1.21349 1.10859 0.93364 0.89842 1.16494 0.77925 0.84380 0.82427 1.90807 1.48665 1.18873 1.83317 1.48802 1.70016 1.08095 1.06914 1.22555 1.00670 0.79839 0.99131 1.22160 1.01297 0.95602 0.93474 0.89352 1.21308 1.00281 0.94851 0.97371 1.21528 1.00320 0.98737 0.94664 1.21936 1.01822 0.95817 0.98249 1.19474 0.97121 0.88487 0.85791 0.92535 1.42755 1.19679 1.46217 1.30190 1.19046 0.98425 1.18564 1.01280 0.89182 1.24658 0.97589 0.99373 0.97316 1.69690 1.35421 1.37084 1.15874 0.86590 0.85034 0.79723 0.77419 1.21156 1.21760 1.20280 1.22201 1.01427 0.93057 0.96074 0.90314 1.21677 1.03284 0.97826 0.76604 0.92038 0.89979 0.91396 0.88358 0.86713 0.90912 0.90539 0.91109 0.81398 0.90613 0.89503 0.91575 0.91809 0.92398 0.92316 0.92868 0.91341 0.80615 0.93048 0.90107 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.11 1.21 6.42 -4.04 -0.03 1.18 16 3 N -0.25 -3.24 3.35 -57.14 -0.19 -3.43 16 4 N -0.28 -3.49 11.90 33.64 0.40 -3.09 16 5 C 0.02 0.19 7.22 -82.47 -0.60 -0.40 16 6 C -0.07 -0.45 10.45 36.01 0.38 -0.07 16 7 C -0.20 -2.14 9.24 -38.99 -0.36 -2.50 16 8 C -0.03 -0.34 6.90 -82.06 -0.57 -0.90 16 9 C 0.60 8.95 7.83 -12.64 -0.10 8.85 16 10 O -0.54 -9.47 15.06 5.25 0.08 -9.39 16 11 N -0.60 -8.16 3.38 -172.09 -0.58 -8.74 16 12 C 0.10 0.99 4.79 -2.70 -0.01 0.97 16 13 C -0.11 -1.13 2.48 -89.77 -0.22 -1.35 16 14 H 0.09 1.01 8.06 -51.93 -0.42 0.59 16 15 C -0.10 -0.93 5.75 -27.01 -0.16 -1.08 16 16 C -0.11 -1.29 5.84 -26.55 -0.16 -1.45 16 17 C -0.14 -2.11 5.40 -27.53 -0.15 -2.26 16 18 C 0.20 3.48 2.41 -69.28 -0.17 3.31 16 19 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 20 N -0.75 -16.58 4.87 -54.74 -0.27 -16.85 16 21 C -0.24 -6.61 10.43 -15.06 -0.16 -6.76 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 25 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 26 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 29 C -0.11 -1.50 1.81 -90.35 -0.16 -1.67 16 30 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 31 C 0.13 1.97 6.52 -3.43 -0.02 1.94 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 1.34 6.51 -51.93 -0.34 1.00 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.17 1.36 4.97 -52.49 -0.26 1.10 16 41 H 0.08 0.64 7.84 -51.93 -0.41 0.24 16 42 H 0.09 0.73 5.92 -51.93 -0.31 0.43 16 43 H 0.07 0.59 8.00 -51.93 -0.42 0.18 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.36 8.00 5.67 -40.82 -0.23 7.77 16 50 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 51 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 52 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 403.40 15.07 6.08 6.08 Total: -1.00 -33.38 403.40 -9.32 -42.70 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.71 Total: 7.04 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.19 Total: -3.31 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.14 Total: -60.34 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.38 -9.32 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992822462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.953 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds