Wall clock time and date at job start Wed Apr 1 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47166 * 2 1 4 4 N 1.28439 * 125.19290 * 266.77110 * 3 2 1 5 5 C 1.30859 * 110.92667 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.06861 * 179.97438 * 5 4 3 7 7 C 1.39672 * 107.86345 * 359.77384 * 5 4 3 8 8 C 1.36601 * 125.18325 * 86.79540 * 3 2 1 9 9 C 1.47161 * 126.89159 * 359.94440 * 8 3 2 10 10 O 1.21628 * 119.99520 * 353.78503 * 9 8 3 11 11 N 1.34773 * 120.00391 * 173.78415 * 9 8 3 12 12 C 1.47754 * 125.81863 * 354.56716 * 11 9 8 13 13 C 1.55971 * 104.11664 * 205.96329 * 12 11 9 14 14 H 1.09000 * 112.99019 * 199.65510 * 13 12 11 15 15 C 1.52973 * 106.41778 * 74.84830 * 13 12 11 16 16 C 1.52639 * 110.89240 * 198.08957 * 15 13 12 17 17 C 1.53268 * 108.56415 * 62.07927 * 16 15 13 18 18 C 1.52833 * 108.34649 * 296.60070 * 17 16 15 19 19 H 1.09004 * 109.07431 * 298.70874 * 18 17 16 20 20 N 1.46502 * 109.08290 * 179.66913 * 18 17 16 21 21 C 1.36927 * 119.99882 * 84.99868 * 20 18 17 22 22 H 1.07997 * 120.00614 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99809 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99787 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00173 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46977 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47248 * 119.99664 * 25 23 21 28 28 H 1.48503 * 109.46964 * 239.99665 * 25 23 21 29 29 C 1.51034 * 111.47526 * 59.21577 * 18 17 16 30 30 H 1.08993 * 109.33367 * 185.64604 * 29 18 17 31 31 C 1.47609 * 125.82305 * 174.58981 * 11 9 8 32 32 H 1.09004 * 109.46495 * 175.27699 * 1 2 3 33 33 H 1.08995 * 109.46890 * 295.26935 * 1 2 3 34 34 H 1.09000 * 109.47300 * 55.27456 * 1 2 3 35 35 H 1.08996 * 109.47384 * 240.00148 * 2 1 3 36 36 H 1.09001 * 109.47302 * 120.00375 * 2 1 3 37 37 H 1.08999 * 109.47725 * 90.02012 * 6 5 4 38 38 H 1.09001 * 109.46865 * 210.02772 * 6 5 4 39 39 H 1.09003 * 109.46360 * 330.01509 * 6 5 4 40 40 H 1.07998 * 127.32116 * 180.26903 * 7 5 4 41 41 H 1.08997 * 110.50119 * 324.62326 * 12 11 9 42 42 H 1.08999 * 110.50035 * 87.30773 * 12 11 9 43 43 H 1.08998 * 109.20234 * 318.42427 * 15 13 12 44 44 H 1.09003 * 109.20049 * 77.71741 * 15 13 12 45 45 H 1.09008 * 109.58780 * 302.37560 * 16 15 13 46 46 H 1.09001 * 109.65454 * 181.82622 * 16 15 13 47 47 H 1.08994 * 109.69961 * 176.86861 * 17 16 15 48 48 H 1.09005 * 109.69538 * 56.32333 * 17 16 15 49 49 H 0.96997 * 119.99358 * 264.99870 * 20 18 17 50 50 H 0.96999 * 119.99649 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.07767 * 60.20449 * 31 11 9 52 52 H 1.09000 * 110.07837 * 298.64336 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.3209 2.0594 -1.0480 5 6 2.7270 3.2610 -0.7260 6 6 3.1655 4.3365 -1.6863 7 6 2.6776 3.3714 0.6655 8 6 2.2219 2.1441 1.1147 9 6 1.9960 1.7436 2.5126 10 8 1.4797 0.6709 2.7620 11 7 2.3613 2.5652 3.5165 12 6 3.0962 3.8384 3.3679 13 6 3.8261 4.0181 4.7346 14 1 4.1319 5.0475 4.9217 15 6 4.9965 3.0331 4.7324 16 6 5.5083 2.7929 6.1502 17 6 4.3797 2.1669 6.9769 18 6 3.2321 3.1725 7.0636 19 1 3.5852 4.0736 7.5651 20 7 2.1399 2.5868 7.8448 21 6 2.1520 2.6744 9.2112 22 1 2.9668 3.1750 9.7131 23 6 1.1173 2.1189 9.9515 24 7 0.1246 1.5085 9.3398 25 14 1.1340 2.2378 11.8156 26 1 2.3509 2.9672 12.2542 27 1 -0.0742 2.9683 12.2759 28 1 1.1389 0.8721 12.3987 29 6 2.7149 3.5408 5.6932 30 1 1.9698 4.3305 5.7889 31 6 2.0960 2.3464 4.9520 32 1 -0.3632 -1.0242 -0.0846 33 1 -0.3633 0.4387 0.9293 34 1 -0.3634 0.5854 -0.8446 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5139 0.8899 37 1 2.3041 4.9385 -1.9757 38 1 3.9083 4.9726 -1.2050 39 1 3.6014 3.8760 -2.5730 40 1 2.9405 4.2312 1.2639 41 1 3.8191 3.7693 2.5552 42 1 2.4028 4.6614 3.1944 43 1 4.6670 2.0859 4.3056 44 1 5.8047 3.4381 4.1234 45 1 5.8064 3.7415 6.5968 46 1 6.3611 2.1146 6.1221 47 1 4.7424 1.9361 7.9785 48 1 4.0324 1.2541 6.4927 49 1 1.4083 2.1369 7.3940 50 1 -0.5982 1.1200 9.8571 51 1 2.5632 1.4185 5.2817 52 1 1.0217 2.3099 5.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992822469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:55 Heat of formation + Delta-G solvation = 55.626920 kcal Electronic energy + Delta-G solvation = -31882.714969 eV Core-core repulsion = 27883.999015 eV Total energy + Delta-G solvation = -3998.715954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.72468 -40.53525 -38.42297 -35.73204 -34.86042 -33.80984 -31.85944 -31.53520 -31.31604 -30.28347 -28.82036 -27.62153 -26.63469 -25.28447 -23.78936 -23.31911 -22.20038 -21.80227 -21.01932 -20.67528 -18.93947 -18.46088 -17.45985 -16.85315 -16.57489 -16.31576 -15.72300 -15.35993 -15.12224 -14.75974 -14.47783 -14.06576 -13.97273 -13.74111 -13.56798 -13.50655 -13.31531 -13.12839 -12.87811 -12.82533 -12.58605 -12.45505 -12.31193 -12.15191 -11.92250 -11.70983 -11.42213 -11.33651 -11.11461 -11.01113 -10.89904 -10.76760 -10.71310 -10.23670 -10.13979 -10.04613 -9.94052 -9.69437 -9.53952 -9.23566 -9.01652 -8.88462 -8.56047 -6.97162 -5.76932 -3.06206 1.18222 2.19137 2.40017 3.00986 3.16015 3.42687 3.48214 3.50648 4.21795 4.28594 4.44210 4.56246 4.72879 4.80025 4.81187 4.84262 4.93867 5.07083 5.14041 5.27551 5.31981 5.37411 5.40666 5.43060 5.43275 5.45588 5.53428 5.56472 5.62666 5.64923 5.68945 5.73676 5.80775 5.82773 5.90276 5.93478 6.02593 6.09530 6.18959 6.25786 6.31123 6.36906 6.40959 6.46641 6.57502 6.63064 6.71390 6.90414 7.10087 7.45075 7.70051 7.91526 8.09361 8.40968 9.52391 10.08868 10.43185 11.45514 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.002814 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.239223 B = 9946.982866 C =11050.545317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.255 5.255 4 N -0.279 5.279 5 C 0.018 3.982 6 C -0.065 4.065 7 C -0.199 4.199 8 C -0.024 4.024 9 C 0.599 3.401 10 O -0.538 6.538 11 N -0.598 5.598 12 C 0.088 3.912 13 C -0.092 4.092 14 H 0.101 0.899 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.136 4.136 18 C 0.191 3.809 19 H 0.052 0.948 20 N -0.727 5.727 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.095 4.095 30 H 0.080 0.920 31 C 0.120 3.880 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.169 0.831 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.080 0.920 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.305 5.368 -21.199 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 N -0.042 5.042 4 N -0.113 5.113 5 C -0.139 4.139 6 C -0.123 4.123 7 C -0.228 4.228 8 C -0.153 4.153 9 C 0.386 3.614 10 O -0.415 6.415 11 N -0.331 5.331 12 C -0.035 4.035 13 C -0.112 4.112 14 H 0.119 0.881 15 C -0.148 4.148 16 C -0.155 4.155 17 C -0.177 4.177 18 C 0.081 3.919 19 H 0.070 0.930 20 N -0.368 5.368 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.115 4.115 30 H 0.098 0.902 31 C -0.001 4.001 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.186 0.814 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.098 0.902 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.747 3.898 -21.830 23.490 hybrid contribution -0.275 0.295 1.607 1.657 sum 7.472 4.193 -20.223 21.963 Atomic orbital electron populations 1.22089 0.93306 1.03453 1.03353 1.22124 0.96369 0.76418 1.05402 1.45767 1.44487 1.12335 1.01640 1.73091 1.18048 1.06436 1.13719 1.22019 1.04433 0.93502 0.93908 1.20066 1.01249 0.94197 0.96825 1.22581 1.07474 0.97823 0.94922 1.21377 1.10568 0.93596 0.89739 1.16484 0.79037 0.83526 0.82362 1.90818 1.44705 1.21761 1.84266 1.48325 1.55641 1.22119 1.07043 1.23173 0.95314 0.85875 0.99116 1.22534 0.95231 1.00092 0.93311 0.88054 1.21482 0.96545 0.99087 0.97684 1.21517 0.98239 1.00640 0.95125 1.22311 0.96068 0.99749 0.99550 1.19665 0.88943 0.94922 0.88419 0.92991 1.42509 1.23620 1.67202 1.03424 1.19262 1.04975 1.30013 0.82693 0.91108 1.24743 0.97290 1.01063 0.97817 1.69670 1.11845 1.42268 1.34140 0.86155 0.77178 0.77171 0.85896 1.20582 1.21933 1.21941 1.21852 0.97019 0.97064 0.95540 0.90207 1.22059 1.01268 0.99873 0.76875 0.90096 0.91055 0.92127 0.88497 0.86990 0.90938 0.90567 0.91140 0.81413 0.89514 0.90852 0.91995 0.92532 0.92164 0.92785 0.91796 0.92557 0.78223 0.93551 0.90208 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.21 37.16 0.38 -1.32 16 2 C 0.12 1.29 6.35 -4.04 -0.03 1.26 16 3 N -0.25 -3.34 3.35 -57.13 -0.19 -3.53 16 4 N -0.28 -3.61 11.90 33.64 0.40 -3.21 16 5 C 0.02 0.20 7.22 -82.47 -0.60 -0.40 16 6 C -0.06 -0.47 10.45 36.01 0.38 -0.09 16 7 C -0.20 -2.24 9.21 -38.98 -0.36 -2.60 16 8 C -0.02 -0.33 6.89 -82.06 -0.57 -0.89 16 9 C 0.60 9.22 7.82 -12.64 -0.10 9.12 16 10 O -0.54 -9.73 14.72 5.25 0.08 -9.65 16 11 N -0.60 -8.39 2.78 -170.92 -0.48 -8.86 16 12 C 0.09 0.92 4.43 -1.77 -0.01 0.91 16 13 C -0.09 -1.03 3.76 -88.35 -0.33 -1.36 16 14 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 15 C -0.11 -1.28 4.81 -26.93 -0.13 -1.41 16 16 C -0.12 -1.51 5.93 -26.78 -0.16 -1.67 16 17 C -0.14 -2.31 5.35 -26.68 -0.14 -2.45 16 18 C 0.19 3.47 2.44 -69.00 -0.17 3.30 16 19 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 20 N -0.73 -17.30 5.02 -54.47 -0.27 -17.57 16 21 C -0.24 -6.39 9.91 -15.06 -0.15 -6.54 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 25 Si 0.90 22.15 29.55 -169.99 -5.02 17.12 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 C -0.09 -1.42 2.46 -90.61 -0.22 -1.64 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 C 0.12 1.96 4.76 -3.13 -0.01 1.95 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.34 6.65 -51.93 -0.35 0.99 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.17 1.45 5.02 -52.49 -0.26 1.19 16 41 H 0.09 0.78 5.65 -51.93 -0.29 0.49 16 42 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 43 H 0.06 0.83 7.01 -51.93 -0.36 0.46 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.06 1.02 6.61 -51.93 -0.34 0.68 16 49 H 0.38 9.83 6.82 -40.82 -0.28 9.55 16 50 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.08 1.46 6.34 -51.93 -0.33 1.13 16 52 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 LS Contribution 398.80 15.07 6.01 6.01 Total: -1.00 -32.47 398.80 -9.54 -42.02 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.48 Total: 9.10 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.31 Total: -4.29 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.19 Total: -60.31 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.47 -9.54 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992822469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.645 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds