Wall clock time and date at job start Wed Apr 1 2020 04:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46833 * 2 1 4 4 C 1.34265 * 125.75129 * 125.30692 * 3 2 1 5 5 C 1.38046 * 107.41227 * 180.10705 * 4 3 2 6 6 C 1.47432 * 126.40801 * 179.86992 * 5 4 3 7 7 O 1.21607 * 119.99519 * 155.50005 * 6 5 4 8 8 N 1.34771 * 120.00416 * 335.49863 * 6 5 4 9 9 C 1.47067 * 125.44339 * 354.58912 * 8 6 5 10 10 C 1.55059 * 105.86095 * 199.56971 * 9 8 6 11 11 H 1.08997 * 111.62476 * 208.19145 * 10 9 8 12 12 C 1.52894 * 107.37865 * 85.79699 * 10 9 8 13 13 C 1.52866 * 109.63073 * 193.25476 * 12 10 9 14 14 C 1.52649 * 108.65284 * 64.94478 * 13 12 10 15 15 C 1.51494 * 110.88881 * 300.18937 * 14 13 12 16 16 H 1.09003 * 108.30453 * 285.50901 * 15 14 13 17 17 N 1.46503 * 108.30283 * 168.38019 * 15 14 13 18 18 C 1.36938 * 120.00119 * 84.99828 * 17 15 14 19 19 H 1.07998 * 119.99958 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99754 * 180.02562 * 18 17 15 21 21 N 1.31615 * 119.99931 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00238 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47081 * 90.00266 * 22 20 18 24 24 H 1.48503 * 109.47326 * 210.00163 * 22 20 18 25 25 H 1.48506 * 109.47439 * 330.00376 * 22 20 18 26 26 C 1.49684 * 115.36996 * 47.03544 * 15 14 13 27 27 H 1.09003 * 107.25743 * 200.78623 * 26 15 14 28 28 C 1.47135 * 125.44245 * 174.56398 * 8 6 5 29 29 C 1.41281 * 107.17345 * 359.61415 * 5 4 3 30 30 C 1.50701 * 125.98851 * 180.24051 * 29 5 4 31 31 N 1.30456 * 108.02337 * 0.23462 * 29 5 4 32 32 H 1.08997 * 109.46881 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47306 * 300.00349 * 1 2 3 34 34 H 1.09001 * 109.47167 * 59.99856 * 1 2 3 35 35 H 1.08997 * 109.47051 * 240.00375 * 2 1 3 36 36 H 1.08989 * 109.47082 * 119.99733 * 2 1 3 37 37 H 1.08001 * 126.29206 * 359.96239 * 4 3 2 38 38 H 1.09004 * 110.17778 * 318.67196 * 9 8 6 39 39 H 1.09008 * 110.17459 * 80.39726 * 9 8 6 40 40 H 1.09005 * 109.44486 * 313.30126 * 12 10 9 41 41 H 1.09005 * 109.44777 * 73.20544 * 12 10 9 42 42 H 1.09001 * 109.60792 * 184.69601 * 13 12 10 43 43 H 1.09001 * 109.60368 * 305.02619 * 13 12 10 44 44 H 1.09002 * 109.19546 * 60.55050 * 14 13 12 45 45 H 1.09004 * 109.19202 * 179.82788 * 14 13 12 46 46 H 0.97002 * 119.99414 * 264.99881 * 17 15 14 47 47 H 0.96999 * 120.00192 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.97736 * 299.87056 * 28 8 6 49 49 H 1.08990 * 109.97854 * 61.15870 * 28 8 6 50 50 H 1.09004 * 109.47363 * 89.99786 * 30 29 5 51 51 H 1.09009 * 109.46998 * 209.99391 * 30 29 5 52 52 H 1.08997 * 109.47256 * 329.99894 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8735 1.9110 0.8892 5 6 3.0717 3.2308 0.5362 6 6 3.9339 4.2030 1.2327 7 8 4.3836 5.1583 0.6294 8 7 4.2236 4.0330 2.5379 9 6 3.6584 2.9909 3.4083 10 6 3.8757 3.4881 4.8608 11 1 3.9644 2.6573 5.5607 12 6 2.6955 4.3933 5.2151 13 6 3.0097 5.1699 6.4937 14 6 4.1819 6.1084 6.2194 15 6 5.4088 5.3294 5.7915 16 1 5.8281 4.8408 6.6710 17 7 6.4003 6.2782 5.2786 18 6 7.2503 6.9145 6.1433 19 1 7.1894 6.7174 7.2034 20 6 8.1894 7.8138 5.6574 21 7 9.0067 8.4251 6.4884 22 14 8.2942 8.1554 3.8239 23 1 7.3975 9.2878 3.4793 24 1 9.6923 8.5040 3.4644 25 1 7.8762 6.9459 3.0703 26 6 5.1735 4.2879 4.7425 27 1 6.0005 3.5800 4.7985 28 6 5.1563 4.8600 3.3196 29 6 2.2983 3.4737 -0.6209 30 6 2.2069 4.7800 -1.3669 31 7 1.6771 2.3691 -0.9305 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5137 0.8899 37 1 3.3220 1.3994 1.7280 38 1 2.5938 2.8701 3.2076 39 1 4.1794 2.0464 3.2511 40 1 2.5180 5.0941 4.3993 41 1 1.8048 3.7843 5.3700 42 1 2.1374 5.7516 6.7920 43 1 3.2740 4.4731 7.2892 44 1 3.9056 6.8050 5.4279 45 1 4.4115 6.6692 7.1254 46 1 6.4547 6.4555 4.3265 47 1 9.6633 9.0533 6.1488 48 1 6.1545 4.8075 2.8850 49 1 4.8116 5.8938 3.3380 50 1 2.9784 4.8139 -2.1361 51 1 1.2251 4.8643 -1.8330 52 1 2.3511 5.6066 -0.6711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992836405.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:08 Heat of formation + Delta-G solvation = 52.849550 kcal Electronic energy + Delta-G solvation = -31798.118222 eV Core-core repulsion = 27799.281833 eV Total energy + Delta-G solvation = -3998.836389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.72097 -40.41625 -38.32412 -35.67836 -35.10005 -34.06360 -31.98012 -31.68392 -31.07988 -30.06405 -29.13096 -27.97816 -26.95505 -25.09714 -23.70444 -23.22094 -22.02076 -21.76299 -20.70213 -20.45370 -19.14819 -18.57872 -17.74043 -17.02180 -16.52630 -16.21827 -15.76866 -15.39285 -14.98589 -14.76871 -14.62027 -14.41682 -13.98586 -13.78684 -13.59927 -13.41507 -13.14033 -13.09400 -12.90250 -12.75315 -12.61195 -12.48646 -12.36319 -12.27214 -12.12352 -12.00052 -11.85276 -11.41164 -11.16171 -11.11817 -10.99409 -10.88860 -10.83997 -10.30394 -10.04081 -9.94636 -9.82202 -9.68679 -9.57060 -9.52416 -8.87796 -8.86559 -8.47661 -7.25207 -5.74322 -3.10128 1.31860 2.01745 2.04122 3.06139 3.35939 3.44028 3.48634 3.52890 3.96152 4.27129 4.40989 4.45952 4.47109 4.56598 4.63552 4.66959 4.73673 4.89864 4.99527 5.11327 5.17038 5.25102 5.26535 5.30837 5.34367 5.35944 5.50628 5.56586 5.58395 5.60296 5.62514 5.66893 5.72485 5.77087 5.83134 5.85158 5.92428 6.05068 6.12376 6.26905 6.30233 6.34137 6.40850 6.42212 6.44534 6.56003 6.66156 6.86090 7.07481 7.36590 7.62624 8.01163 8.32148 8.44344 9.22620 9.95652 10.14118 11.43818 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.003098 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.155992 B = 9034.927519 C =10276.963654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.360 5.360 4 C 0.094 3.906 5 C -0.278 4.278 6 C 0.604 3.396 7 O -0.536 6.536 8 N -0.612 5.612 9 C 0.100 3.900 10 C -0.087 4.087 11 H 0.096 0.904 12 C -0.111 4.111 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.196 3.804 16 H 0.056 0.944 17 N -0.753 5.753 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.275 1.275 26 C -0.092 4.092 27 H 0.073 0.927 28 C 0.117 3.883 29 C 0.129 3.871 30 C -0.073 4.073 31 N -0.300 5.300 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.184 0.816 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.289 -20.328 -9.563 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.139 5.139 4 C -0.057 4.057 5 C -0.293 4.293 6 C 0.393 3.607 7 O -0.414 6.414 8 N -0.346 5.346 9 C -0.023 4.023 10 C -0.106 4.106 11 H 0.114 0.886 12 C -0.148 4.148 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.086 3.914 16 H 0.074 0.926 17 N -0.397 5.397 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.582 5.582 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.201 1.201 26 C -0.112 4.112 27 H 0.092 0.908 28 C -0.005 4.005 29 C -0.038 4.038 30 C -0.131 4.131 31 N -0.122 5.122 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.201 0.799 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.196 0.804 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.089 0.911 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.755 -20.443 -10.594 30.338 hybrid contribution 0.882 0.508 -0.604 1.184 sum -18.872 -19.935 -11.198 29.647 Atomic orbital electron populations 1.22051 0.93364 1.03049 1.03839 1.21807 0.96478 0.76967 1.04142 1.48509 1.34166 1.10477 1.20771 1.23344 0.93032 0.94123 0.95193 1.20199 1.11406 0.94584 1.03150 1.16900 0.79671 0.84356 0.79755 1.90793 1.53517 1.31438 1.65619 1.48227 1.44950 1.32777 1.08651 1.22528 0.98470 0.90904 0.90417 1.21962 0.95565 0.98352 0.94727 0.88619 1.21540 0.96254 0.98285 0.98740 1.21426 0.98646 0.98565 0.96796 1.21845 0.94977 0.98357 1.01921 1.19047 0.89460 0.88772 0.94080 0.92560 1.43055 1.40005 1.50753 1.05911 1.19062 1.09300 1.17552 0.91357 0.89167 1.24641 0.98225 0.99168 0.96900 1.69695 1.23435 1.31909 1.33133 0.86661 0.77148 0.78461 0.86922 1.20978 1.21714 1.20149 1.21167 0.97219 0.98430 0.94340 0.90842 1.21845 0.92964 0.95447 0.90211 1.22437 0.92986 0.95111 0.93256 1.20257 1.02569 0.90437 0.99876 1.77121 1.24958 0.96695 1.13437 0.90490 0.91900 0.90934 0.89417 0.88320 0.79937 0.90739 0.92064 0.91832 0.92437 0.92555 0.92159 0.92576 0.91641 0.80364 0.93094 0.91126 0.90899 0.89950 0.91063 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.09 37.16 0.37 -0.41 16 2 C 0.13 0.64 7.21 -4.04 -0.03 0.61 16 3 N -0.36 -3.34 3.65 -60.81 -0.22 -3.56 16 4 C 0.09 0.89 9.71 -16.56 -0.16 0.73 16 5 C -0.28 -3.62 5.80 -105.07 -0.61 -4.23 16 6 C 0.60 9.50 7.71 -12.52 -0.10 9.40 16 7 O -0.54 -10.45 15.93 5.27 0.08 -10.37 16 8 N -0.61 -8.59 3.31 -172.47 -0.57 -9.16 16 9 C 0.10 0.98 4.53 -2.64 -0.01 0.97 16 10 C -0.09 -0.92 3.40 -89.64 -0.30 -1.23 16 11 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.11 -1.22 4.89 -26.85 -0.13 -1.35 16 13 C -0.12 -1.44 5.94 -26.98 -0.16 -1.60 16 14 C -0.13 -2.17 5.40 -27.67 -0.15 -2.32 16 15 C 0.20 3.51 2.52 -70.33 -0.18 3.33 16 16 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 17 N -0.75 -17.36 4.66 -55.78 -0.26 -17.62 16 18 C -0.24 -6.73 10.35 -15.06 -0.16 -6.89 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.41 13.97 55.49 0.78 -28.63 16 22 Si 0.88 22.82 27.73 -169.99 -4.71 18.11 16 23 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 26 C -0.09 -1.34 2.35 -92.12 -0.22 -1.56 16 27 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 28 C 0.12 1.94 4.86 -3.50 -0.02 1.93 16 29 C 0.13 1.68 7.26 -82.02 -0.60 1.09 16 30 C -0.07 -0.84 9.81 36.01 0.35 -0.49 16 31 N -0.30 -3.64 12.33 33.89 0.42 -3.22 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.22 8.06 -51.94 -0.42 -0.20 16 37 H 0.18 1.14 5.77 -52.49 -0.30 0.84 16 38 H 0.07 0.64 6.94 -51.93 -0.36 0.28 16 39 H 0.06 0.47 6.97 -51.92 -0.36 0.10 16 40 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.36 8.46 3.57 -40.82 -0.15 8.31 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 48 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 49 H 0.07 1.37 7.34 -51.93 -0.38 0.99 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 52 H 0.09 1.11 7.26 -51.93 -0.38 0.73 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -35.60 401.73 -9.30 -44.90 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.68 Total: 5.42 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.18 Total: -1.90 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.14 Total: -62.20 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.60 -9.30 -44.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992836405.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.746 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds