Wall clock time and date at job start Wed Apr 1 2020 04:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47266 * 2 1 4 4 N 1.28476 * 124.88069 * 269.97316 * 3 2 1 5 5 C 1.31807 * 110.07265 * 180.02562 * 4 3 2 6 6 C 1.47715 * 126.51863 * 180.02562 * 5 4 3 7 7 O 1.21568 * 119.99770 * 179.97438 * 6 5 4 8 8 N 1.34767 * 119.99886 * 359.97438 * 6 5 4 9 9 C 1.46502 * 119.99860 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.49667 * 34.93340 * 9 8 6 11 11 C 1.53041 * 109.49306 * 274.83469 * 9 8 6 12 12 C 1.53048 * 109.53449 * 178.68488 * 11 9 8 13 13 C 1.53192 * 109.31273 * 61.36685 * 12 11 9 14 14 N 1.46931 * 108.77532 * 305.36378 * 13 12 11 15 15 C 1.36936 * 120.63006 * 233.62791 * 14 13 12 16 16 H 1.08001 * 119.99804 * 150.14584 * 15 14 13 17 17 C 1.38809 * 120.00201 * 330.15156 * 15 14 13 18 18 N 1.31619 * 119.99875 * 344.49471 * 17 15 14 19 19 Si 1.86798 * 120.00166 * 164.49622 * 17 15 14 20 20 H 1.48507 * 109.47241 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47410 * 119.99749 * 19 17 15 22 22 H 1.48503 * 109.47155 * 239.99867 * 19 17 15 23 23 C 1.46921 * 118.73691 * 53.60971 * 14 13 12 24 24 H 1.09003 * 109.70594 * 66.25034 * 23 14 13 25 25 C 1.52996 * 109.58576 * 186.60277 * 23 14 13 26 26 C 1.41507 * 106.96237 * 0.02562 * 5 4 3 27 27 C 1.35032 * 124.89037 * 89.99739 * 3 2 1 28 28 C 1.50704 * 126.38056 * 0.24810 * 27 3 2 29 29 C 1.53002 * 117.49261 * 213.45752 * 28 27 3 30 30 C 1.52997 * 117.49906 * 144.79966 * 28 27 3 31 31 H 1.09001 * 109.46898 * 300.00580 * 1 2 3 32 32 H 1.08994 * 109.46881 * 59.99963 * 1 2 3 33 33 H 1.08992 * 109.46985 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46898 * 239.99420 * 2 1 3 35 35 H 1.09005 * 109.47178 * 119.99662 * 2 1 3 36 36 H 0.97000 * 120.00443 * 359.97438 * 8 6 5 37 37 H 1.08994 * 109.46142 * 298.70159 * 11 9 8 38 38 H 1.09002 * 109.46190 * 58.66735 * 11 9 8 39 39 H 1.09002 * 109.49833 * 301.41493 * 12 11 9 40 40 H 1.09002 * 109.52311 * 181.33716 * 12 11 9 41 41 H 1.09005 * 109.58504 * 185.58010 * 13 12 11 42 42 H 1.08995 * 109.58767 * 65.15243 * 13 12 11 43 43 H 0.97005 * 119.99917 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.47242 * 179.28842 * 25 23 14 45 45 H 1.09004 * 109.47091 * 299.29093 * 25 23 14 46 46 H 1.09004 * 109.47512 * 59.28903 * 25 23 14 47 47 H 1.08009 * 127.24579 * 180.02562 * 26 5 4 48 48 H 1.09002 * 115.54909 * 359.12250 * 28 27 3 49 49 H 1.08998 * 117.50467 * 359.97438 * 29 28 27 50 50 H 1.09004 * 117.49644 * 145.02367 * 29 28 27 51 51 H 1.09003 * 117.49739 * 214.97859 * 30 28 27 52 52 H 1.09001 * 117.49913 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2638 2.0737 -1.0539 5 6 2.6890 3.2750 -0.7171 6 6 3.0735 4.3622 -1.6401 7 8 3.4509 5.4299 -1.1979 8 7 3.0059 4.1705 -2.9724 9 6 3.3878 5.2486 -3.8878 10 1 4.2128 5.8162 -3.4574 11 6 2.1911 6.1759 -4.1123 12 6 2.5984 7.3209 -5.0426 13 6 3.0253 6.7460 -6.3968 14 7 4.0779 5.7452 -6.1751 15 6 5.2734 5.8316 -6.8373 16 1 6.1740 5.4520 -6.3777 17 6 5.3278 6.4071 -8.0993 18 7 4.2208 6.5903 -8.7873 19 14 6.9720 6.9216 -8.8211 20 1 8.0560 6.6108 -7.8548 21 1 7.2100 6.1826 -10.0870 22 1 6.9574 8.3811 -9.0953 23 6 3.8236 4.6502 -5.2290 24 1 3.0337 4.0063 -5.6158 25 6 5.1023 3.8330 -5.0347 26 6 2.7070 3.3250 0.6970 27 6 2.2758 2.1094 1.1076 28 6 2.1194 1.6514 2.5348 29 6 1.6945 2.6957 3.5691 30 6 3.1320 2.1697 3.5580 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.7051 3.3185 -3.3252 37 1 1.3753 5.6127 -4.5653 38 1 1.8635 6.5839 -3.1561 39 1 3.4307 7.8695 -4.6016 40 1 1.7528 7.9942 -5.1834 41 1 3.4096 7.5466 -7.0289 42 1 2.1693 6.2750 -6.8801 43 1 4.2588 6.9922 -9.6693 44 1 4.9150 3.0289 -4.3229 45 1 5.4107 3.4081 -5.9900 46 1 5.8924 4.4796 -4.6527 47 1 3.0016 4.1582 1.3179 48 1 1.7484 0.6347 2.6643 49 1 1.5285 3.7140 3.2175 50 1 1.0443 2.3659 4.3795 51 1 3.4269 1.4941 4.3610 52 1 3.9115 2.8416 3.1989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993426459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:13 Heat of formation + Delta-G solvation = 82.940846 kcal Electronic energy + Delta-G solvation = -30971.422563 eV Core-core repulsion = 26973.891030 eV Total energy + Delta-G solvation = -3997.531533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.87257 -39.43554 -37.62733 -37.44701 -34.88292 -34.20458 -32.50329 -31.62822 -30.54932 -30.30775 -28.98832 -26.27746 -25.08830 -24.70102 -23.95742 -22.79549 -22.65217 -21.56482 -20.60723 -20.46545 -19.60679 -19.07447 -17.77638 -16.71237 -16.32445 -16.04143 -15.57720 -15.45426 -14.97166 -14.78016 -14.61329 -14.45157 -13.88242 -13.70664 -13.68465 -13.47323 -13.25745 -12.98073 -12.68307 -12.59970 -12.46486 -12.14192 -11.97016 -11.82183 -11.63201 -11.47637 -11.39193 -11.19578 -11.03715 -10.88237 -10.73662 -10.70086 -10.49264 -10.22264 -10.08560 -9.97695 -9.92353 -9.59236 -9.30746 -9.20063 -8.91990 -8.55539 -8.39812 -6.61330 -5.75176 -3.19447 1.54140 1.93731 2.21081 3.39964 3.44579 3.48688 3.50382 3.51686 3.65684 3.97747 4.11393 4.42379 4.45513 4.52588 4.55747 4.57392 4.67155 4.73950 5.04516 5.19965 5.22406 5.23505 5.34977 5.38465 5.47541 5.51204 5.57711 5.60255 5.60655 5.69679 5.71295 5.84184 5.87758 6.05037 6.17251 6.28945 6.30054 6.42608 6.50269 6.59389 6.61584 6.71041 6.80107 6.82980 6.93690 7.06172 7.15544 7.45582 7.70328 7.71923 7.86830 7.99252 8.47944 8.55037 9.24932 9.87587 10.44680 11.33601 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.002273 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.614766 B =12313.318029 C =12499.410838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.278 5.278 4 N -0.258 5.258 5 C -0.006 4.006 6 C 0.600 3.400 7 O -0.537 6.537 8 N -0.704 5.704 9 C 0.131 3.869 10 H 0.087 0.913 11 C -0.117 4.117 12 C -0.140 4.140 13 C 0.170 3.830 14 N -0.582 5.582 15 C -0.249 4.249 16 H 0.071 0.929 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.168 3.832 24 H 0.028 0.972 25 C -0.137 4.137 26 C -0.178 4.178 27 C 0.043 3.957 28 C -0.097 4.097 29 C -0.162 4.162 30 C -0.163 4.163 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.402 0.598 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.158 0.842 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -14.319 23.208 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.066 5.066 4 N -0.093 5.093 5 C -0.167 4.167 6 C 0.384 3.616 7 O -0.412 6.412 8 N -0.354 5.354 9 C 0.025 3.975 10 H 0.105 0.895 11 C -0.156 4.156 12 C -0.180 4.180 13 C 0.044 3.956 14 N -0.305 5.305 15 C -0.379 4.379 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.061 3.939 24 H 0.045 0.955 25 C -0.194 4.194 26 C -0.206 4.206 27 C -0.080 4.080 28 C -0.117 4.117 29 C -0.199 4.199 30 C -0.200 4.200 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.236 0.764 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.176 0.824 48 H 0.132 0.868 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.251 -14.273 22.354 27.776 hybrid contribution 0.666 0.246 0.023 0.711 sum -7.585 -14.027 22.377 27.477 Atomic orbital electron populations 1.22180 0.93468 1.03511 1.03726 1.21967 0.95976 0.77378 1.05256 1.45419 1.46483 1.12302 1.02405 1.73558 1.17470 1.04845 1.13455 1.22014 1.07650 0.92962 0.94060 1.16875 0.77739 0.85282 0.81722 1.90781 1.47581 1.25681 1.77146 1.45995 1.66401 1.17843 1.05128 1.21824 0.97351 0.87718 0.90569 0.89471 1.21768 0.97407 0.97315 0.99078 1.22185 0.99938 0.96787 0.99050 1.20828 0.90362 0.92823 0.91544 1.44043 1.15216 1.24261 1.47009 1.19210 0.85695 1.36767 0.96204 0.91178 1.25088 0.96711 1.02092 0.95652 1.70042 1.25869 1.47088 1.11655 0.86243 0.83754 0.78134 0.78773 1.20220 1.21803 1.21591 1.20551 0.95496 0.89913 0.87985 0.95462 1.21820 0.98062 0.98559 1.00982 1.21382 1.07864 0.97744 0.93654 1.20376 1.06069 0.92547 0.89050 1.20262 1.06981 0.99232 0.85213 1.23108 0.97938 0.98947 0.99948 1.23119 0.93194 1.03578 1.00129 0.91721 0.91172 0.90065 0.87829 0.88355 0.76404 0.92760 0.93118 0.92474 0.93016 0.89486 0.96291 0.93757 0.94243 0.91815 0.92662 0.82423 0.86790 0.87904 0.88054 0.88043 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.24 37.16 0.38 -0.51 16 2 C 0.11 0.70 6.74 -4.04 -0.03 0.67 16 3 N -0.28 -2.89 3.30 -57.11 -0.19 -3.08 16 4 N -0.26 -3.47 11.67 33.42 0.39 -3.08 16 5 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 6 C 0.60 10.56 7.79 -12.39 -0.10 10.47 16 7 O -0.54 -11.04 16.59 5.31 0.09 -10.95 16 8 N -0.70 -11.89 4.57 -54.68 -0.25 -12.14 16 9 C 0.13 2.54 2.00 -67.81 -0.14 2.40 16 10 H 0.09 1.91 7.58 -51.93 -0.39 1.51 16 11 C -0.12 -2.23 5.46 -26.69 -0.15 -2.38 16 12 C -0.14 -2.85 6.08 -26.61 -0.16 -3.02 16 13 C 0.17 4.11 5.28 -3.71 -0.02 4.09 16 14 N -0.58 -14.55 2.99 -164.77 -0.49 -15.04 16 15 C -0.25 -6.75 8.58 -15.06 -0.13 -6.88 16 16 H 0.07 1.87 6.23 -52.49 -0.33 1.55 16 17 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 18 N -0.90 -26.14 11.23 55.49 0.62 -25.52 16 19 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.17 3.55 3.03 -67.60 -0.21 3.35 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.14 -2.69 7.84 37.16 0.29 -2.40 16 26 C -0.18 -2.31 9.86 -39.36 -0.39 -2.69 16 27 C 0.04 0.45 6.60 -82.21 -0.54 -0.10 16 28 C -0.10 -0.66 5.93 -91.77 -0.54 -1.20 16 29 C -0.16 -0.96 10.05 -26.69 -0.27 -1.23 16 30 C -0.16 -0.97 10.06 -26.69 -0.27 -1.24 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.36 7.13 -51.93 -0.37 -0.01 16 36 H 0.40 6.14 8.33 -40.82 -0.34 5.80 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 2.34 6.15 -51.93 -0.32 2.02 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.04 0.67 7.79 -51.93 -0.40 0.26 16 45 H 0.06 1.31 7.67 -51.93 -0.40 0.92 16 46 H 0.05 1.13 7.40 -51.93 -0.38 0.75 16 47 H 0.16 1.93 8.06 -52.48 -0.42 1.50 16 48 H 0.11 0.54 7.18 -51.93 -0.37 0.17 16 49 H 0.10 0.71 7.95 -51.93 -0.41 0.30 16 50 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.10 0.72 7.97 -51.93 -0.41 0.31 16 LS Contribution 414.27 15.07 6.24 6.24 Total: -1.00 -32.86 414.27 -10.32 -43.18 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.77 Total: 4.91 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.94 Total: -1.35 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.08 Total: -58.86 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.86 -10.32 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993426459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.120 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds