Wall clock time and date at job start Wed Apr 1 2020 04:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47266 * 2 1 4 4 N 1.28476 * 124.88069 * 269.97316 * 3 2 1 5 5 C 1.31807 * 110.07265 * 180.02562 * 4 3 2 6 6 C 1.47715 * 126.51863 * 180.02562 * 5 4 3 7 7 O 1.21568 * 119.99770 * 179.97438 * 6 5 4 8 8 N 1.34767 * 119.99886 * 359.97438 * 6 5 4 9 9 C 1.46502 * 119.99860 * 180.02562 * 8 6 5 10 10 H 1.08992 * 109.49667 * 34.93340 * 9 8 6 11 11 C 1.53041 * 109.49306 * 274.83469 * 9 8 6 12 12 C 1.53048 * 109.53449 * 178.68488 * 11 9 8 13 13 C 1.53192 * 109.31273 * 61.36685 * 12 11 9 14 14 N 1.46931 * 108.77532 * 305.36378 * 13 12 11 15 15 C 1.36936 * 120.63006 * 233.62791 * 14 13 12 16 16 H 1.08001 * 119.99804 * 150.14584 * 15 14 13 17 17 C 1.38809 * 120.00201 * 330.15156 * 15 14 13 18 18 N 1.31619 * 119.99875 * 344.49471 * 17 15 14 19 19 Si 1.86798 * 120.00166 * 164.49622 * 17 15 14 20 20 H 1.48507 * 109.47241 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47410 * 119.99749 * 19 17 15 22 22 H 1.48503 * 109.47155 * 239.99867 * 19 17 15 23 23 C 1.46921 * 118.73691 * 53.60971 * 14 13 12 24 24 H 1.09003 * 109.70594 * 66.25034 * 23 14 13 25 25 C 1.52996 * 109.58576 * 186.60277 * 23 14 13 26 26 C 1.41507 * 106.96237 * 0.02562 * 5 4 3 27 27 C 1.35032 * 124.89037 * 89.99739 * 3 2 1 28 28 C 1.50704 * 126.38056 * 0.24810 * 27 3 2 29 29 C 1.53002 * 117.49261 * 213.45752 * 28 27 3 30 30 C 1.52997 * 117.49906 * 144.79966 * 28 27 3 31 31 H 1.09001 * 109.46898 * 300.00580 * 1 2 3 32 32 H 1.08994 * 109.46881 * 59.99963 * 1 2 3 33 33 H 1.08992 * 109.46985 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46898 * 239.99420 * 2 1 3 35 35 H 1.09005 * 109.47178 * 119.99662 * 2 1 3 36 36 H 0.97000 * 120.00443 * 359.97438 * 8 6 5 37 37 H 1.08994 * 109.46142 * 298.70159 * 11 9 8 38 38 H 1.09002 * 109.46190 * 58.66735 * 11 9 8 39 39 H 1.09002 * 109.49833 * 301.41493 * 12 11 9 40 40 H 1.09002 * 109.52311 * 181.33716 * 12 11 9 41 41 H 1.09005 * 109.58504 * 185.58010 * 13 12 11 42 42 H 1.08995 * 109.58767 * 65.15243 * 13 12 11 43 43 H 0.97005 * 119.99917 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.47242 * 179.28842 * 25 23 14 45 45 H 1.09004 * 109.47091 * 299.29093 * 25 23 14 46 46 H 1.09004 * 109.47512 * 59.28903 * 25 23 14 47 47 H 1.08009 * 127.24579 * 180.02562 * 26 5 4 48 48 H 1.09002 * 115.54909 * 359.12250 * 28 27 3 49 49 H 1.08998 * 117.50467 * 359.97438 * 29 28 27 50 50 H 1.09004 * 117.49644 * 145.02367 * 29 28 27 51 51 H 1.09003 * 117.49739 * 214.97859 * 30 28 27 52 52 H 1.09001 * 117.49913 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2638 2.0737 -1.0539 5 6 2.6890 3.2750 -0.7171 6 6 3.0735 4.3622 -1.6401 7 8 3.4509 5.4299 -1.1979 8 7 3.0059 4.1705 -2.9724 9 6 3.3878 5.2486 -3.8878 10 1 4.2128 5.8162 -3.4574 11 6 2.1911 6.1759 -4.1123 12 6 2.5984 7.3209 -5.0426 13 6 3.0253 6.7460 -6.3968 14 7 4.0779 5.7452 -6.1751 15 6 5.2734 5.8316 -6.8373 16 1 6.1740 5.4520 -6.3777 17 6 5.3278 6.4071 -8.0993 18 7 4.2208 6.5903 -8.7873 19 14 6.9720 6.9216 -8.8211 20 1 8.0560 6.6108 -7.8548 21 1 7.2100 6.1826 -10.0870 22 1 6.9574 8.3811 -9.0953 23 6 3.8236 4.6502 -5.2290 24 1 3.0337 4.0063 -5.6158 25 6 5.1023 3.8330 -5.0347 26 6 2.7070 3.3250 0.6970 27 6 2.2758 2.1094 1.1076 28 6 2.1194 1.6514 2.5348 29 6 1.6945 2.6957 3.5691 30 6 3.1320 2.1697 3.5580 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.7051 3.3185 -3.3252 37 1 1.3753 5.6127 -4.5653 38 1 1.8635 6.5839 -3.1561 39 1 3.4307 7.8695 -4.6016 40 1 1.7528 7.9942 -5.1834 41 1 3.4096 7.5466 -7.0289 42 1 2.1693 6.2750 -6.8801 43 1 4.2588 6.9922 -9.6693 44 1 4.9150 3.0289 -4.3229 45 1 5.4107 3.4081 -5.9900 46 1 5.8924 4.4796 -4.6527 47 1 3.0016 4.1582 1.3179 48 1 1.7484 0.6347 2.6643 49 1 1.5285 3.7140 3.2175 50 1 1.0443 2.3659 4.3795 51 1 3.4269 1.4941 4.3610 52 1 3.9115 2.8416 3.1989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993426459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:12 Heat of formation + Delta-G solvation = 63.506314 kcal Electronic energy + Delta-G solvation = -30972.265307 eV Core-core repulsion = 26973.891030 eV Total energy + Delta-G solvation = -3998.374277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.77244 -40.93931 -39.16691 -38.11207 -35.91759 -35.57177 -34.26575 -33.43278 -31.58256 -31.28775 -30.46269 -27.95916 -26.92387 -25.77977 -24.77536 -23.75149 -23.21988 -22.90080 -22.33875 -21.55241 -21.12503 -20.32012 -18.64993 -18.28358 -17.67562 -17.29266 -16.98557 -16.63061 -16.06790 -15.88553 -15.64791 -15.62081 -15.41768 -15.24537 -14.93466 -14.82247 -14.53092 -14.41508 -14.28877 -13.50806 -13.35779 -13.28061 -13.06120 -12.83776 -12.75070 -12.73222 -12.53400 -12.39422 -12.38597 -12.29576 -12.01945 -11.99813 -11.93929 -11.84575 -11.78813 -11.66719 -11.32809 -11.28230 -11.07261 -10.53879 -10.23935 -9.94707 -9.73796 -8.65445 -7.85697 -5.32302 0.49828 0.99555 1.45795 1.47195 1.48831 1.58422 2.11316 2.34899 2.53842 3.04426 3.23464 3.29779 3.45834 3.61185 3.79234 3.89645 3.97123 4.00725 4.01485 4.03506 4.11073 4.19613 4.33305 4.34401 4.35920 4.47060 4.52064 4.60061 4.72462 4.74415 4.79606 4.83478 4.84075 4.87668 4.89884 5.02189 5.04037 5.12230 5.17676 5.19115 5.22858 5.26018 5.28696 5.31208 5.40619 5.46455 5.57077 5.70760 5.75493 5.84244 6.41752 6.46503 6.90198 7.15150 7.18554 7.85409 8.38303 9.21665 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.002273 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.614766 B =12313.318029 C =12499.410838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.268 5.268 4 N -0.268 5.268 5 C -0.037 4.037 6 C 0.601 3.399 7 O -0.574 6.574 8 N -0.695 5.695 9 C 0.146 3.854 10 H 0.062 0.938 11 C -0.109 4.109 12 C -0.128 4.128 13 C 0.176 3.824 14 N -0.599 5.599 15 C -0.253 4.253 16 H 0.071 0.929 17 C -0.049 4.049 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.167 3.833 24 H 0.031 0.969 25 C -0.127 4.127 26 C -0.202 4.202 27 C 0.059 3.941 28 C -0.103 4.103 29 C -0.159 4.159 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.004 0.996 43 H 0.249 0.751 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.154 0.846 48 H 0.145 0.855 49 H 0.087 0.913 50 H 0.125 0.875 51 H 0.125 0.875 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.887 -16.950 25.792 32.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.057 5.057 4 N -0.104 5.104 5 C -0.195 4.195 6 C 0.387 3.613 7 O -0.451 6.451 8 N -0.345 5.345 9 C 0.040 3.960 10 H 0.080 0.920 11 C -0.148 4.148 12 C -0.168 4.168 13 C 0.051 3.949 14 N -0.323 5.323 15 C -0.383 4.383 16 H 0.089 0.911 17 C -0.244 4.244 18 N -0.579 5.579 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.060 3.940 24 H 0.048 0.952 25 C -0.184 4.184 26 C -0.230 4.230 27 C -0.066 4.066 28 C -0.123 4.123 29 C -0.196 4.196 30 C -0.197 4.197 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.247 0.753 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.022 0.978 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.172 0.828 48 H 0.163 0.837 49 H 0.105 0.895 50 H 0.143 0.857 51 H 0.143 0.857 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.890 -16.943 24.953 31.445 hybrid contribution 0.802 0.945 -0.683 1.415 sum -8.088 -15.998 24.271 30.173 Atomic orbital electron populations 1.22157 0.92591 1.04977 1.02590 1.22474 0.96669 0.75194 1.07291 1.45911 1.44732 1.13340 1.01743 1.73482 1.17678 1.04430 1.14850 1.21662 1.10276 0.93236 0.94357 1.17200 0.76754 0.85508 0.81830 1.90749 1.49268 1.27405 1.77725 1.45790 1.66333 1.17572 1.04836 1.21394 0.96730 0.88066 0.89791 0.91987 1.21691 0.97413 0.96818 0.98894 1.22023 1.00404 0.97394 0.96969 1.20641 0.89491 0.91849 0.92930 1.44272 1.14863 1.25668 1.47493 1.19467 0.86622 1.35993 0.96216 0.91109 1.25789 0.99650 1.02733 0.96223 1.70178 1.27648 1.48265 1.11815 0.85281 0.80417 0.77276 0.77932 1.19309 1.21822 1.21856 1.20665 0.96334 0.89182 0.87841 0.95188 1.21715 0.96875 0.98815 1.01007 1.21484 1.09445 0.99192 0.92875 1.20810 1.03676 0.91416 0.90663 1.20498 1.08014 1.00846 0.82918 1.23172 0.98408 0.98016 1.00024 1.23182 0.92788 1.03563 1.00200 0.91641 0.93481 0.87287 0.87270 0.84954 0.75267 0.91785 0.92643 0.93451 0.90700 0.92554 0.97773 0.94180 0.91397 0.92962 0.93863 0.82838 0.83731 0.89491 0.85714 0.85704 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 71.98 0.74 -0.49 16 2 C 0.10 0.90 6.74 86.38 0.58 1.49 16 3 N -0.27 -5.03 3.30 -334.59 -1.10 -6.13 16 4 N -0.27 -6.93 11.67 -48.17 -0.56 -7.49 16 5 C -0.04 -1.11 7.13 42.46 0.30 -0.81 16 6 C 0.60 21.51 7.79 86.75 0.68 22.19 16 7 O -0.57 -24.31 16.59 -3.93 -0.07 -24.37 16 8 N -0.70 -23.48 4.57 -445.17 -2.03 -25.51 16 9 C 0.15 5.73 2.00 45.07 0.09 5.82 16 10 H 0.06 2.78 7.58 -2.39 -0.02 2.76 16 11 C -0.11 -4.16 5.46 30.62 0.17 -3.99 16 12 C -0.13 -5.27 6.08 30.67 0.19 -5.09 16 13 C 0.18 8.77 5.28 86.36 0.46 9.22 16 14 N -0.60 -30.56 2.99 -675.23 -2.02 -32.58 16 15 C -0.25 -13.94 8.58 84.03 0.72 -13.22 16 16 H 0.07 3.83 6.23 -2.91 -0.02 3.81 16 17 C -0.05 -2.74 4.94 84.86 0.42 -2.32 16 18 N -0.93 -55.46 11.23 21.65 0.24 -55.22 16 19 Si 0.96 45.68 29.58 68.60 2.03 47.71 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 C 0.17 7.08 3.03 44.98 0.14 7.22 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 C -0.13 -4.96 7.84 71.98 0.56 -4.40 16 26 C -0.20 -5.20 9.86 22.41 0.22 -4.98 16 27 C 0.06 1.11 6.60 41.40 0.27 1.38 16 28 C -0.10 -1.06 5.93 -11.54 -0.07 -1.13 16 29 C -0.16 -1.47 10.05 30.62 0.31 -1.17 16 30 C -0.16 -1.49 10.06 30.62 0.31 -1.19 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.13 0.32 7.13 -2.38 -0.02 0.30 16 36 H 0.41 12.34 8.33 -92.71 -0.77 11.57 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.06 3.14 6.15 -2.38 -0.01 3.13 16 42 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 44 H 0.07 2.24 7.79 -2.39 -0.02 2.22 16 45 H 0.05 2.15 7.67 -2.38 -0.02 2.13 16 46 H 0.04 1.78 7.40 -2.38 -0.02 1.76 16 47 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 48 H 0.15 0.62 7.18 -2.39 -0.02 0.60 16 49 H 0.09 1.11 7.95 -2.39 -0.02 1.09 16 50 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.09 1.12 7.97 -2.39 -0.02 1.10 16 Total: -1.00 -73.77 414.27 2.71 -71.05 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.14 Total: 24.02 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.08 Total: 8.53 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.47 Total: -126.94 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.07 Total: -24.37 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.77 2.71 -71.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993426459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.560 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds