Wall clock time and date at job start Wed Apr 1 2020 04:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47286 * 2 1 4 4 N 1.28470 * 124.88293 * 90.02670 * 3 2 1 5 5 C 1.31799 * 110.07390 * 180.02562 * 4 3 2 6 6 C 1.47708 * 126.52094 * 179.97438 * 5 4 3 7 7 O 1.21573 * 120.00127 * 180.02562 * 6 5 4 8 8 N 1.34778 * 119.99839 * 0.02768 * 6 5 4 9 9 C 1.46496 * 119.99937 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.50113 * 324.93538 * 9 8 6 11 11 C 1.53044 * 109.49856 * 85.00239 * 9 8 6 12 12 C 1.53038 * 109.53773 * 181.31608 * 11 9 8 13 13 C 1.53186 * 109.31332 * 298.63121 * 12 11 9 14 14 N 1.46922 * 108.77819 * 54.63822 * 13 12 11 15 15 C 1.36936 * 120.63535 * 126.36998 * 14 13 12 16 16 H 1.07999 * 119.99934 * 210.36125 * 15 14 13 17 17 C 1.38801 * 119.99906 * 30.35403 * 15 14 13 18 18 N 1.31625 * 120.00325 * 23.56869 * 17 15 14 19 19 Si 1.86797 * 120.00264 * 203.56647 * 17 15 14 20 20 H 1.48503 * 109.47390 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47299 * 300.00573 * 19 17 15 22 22 H 1.48500 * 109.47304 * 60.00298 * 19 17 15 23 23 C 1.46935 * 118.73511 * 306.64441 * 14 13 12 24 24 H 1.09001 * 109.58742 * 293.56406 * 23 14 13 25 25 C 1.53003 * 109.58563 * 173.14077 * 23 14 13 26 26 C 1.41504 * 106.96284 * 0.23055 * 5 4 3 27 27 C 1.35031 * 124.88550 * 270.02604 * 3 2 1 28 28 C 1.50697 * 126.38421 * 0.03684 * 27 3 2 29 29 C 1.53001 * 117.49620 * 213.61515 * 28 27 3 30 30 C 1.52996 * 60.00297 * 252.51076 * 29 28 27 31 31 H 1.08997 * 109.46728 * 299.99566 * 1 2 3 32 32 H 1.08996 * 109.46953 * 59.99645 * 1 2 3 33 33 H 1.09004 * 109.46872 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47007 * 240.00225 * 2 1 3 35 35 H 1.08999 * 109.47316 * 120.00720 * 2 1 3 36 36 H 0.97005 * 119.99697 * 359.97438 * 8 6 5 37 37 H 1.09001 * 109.46083 * 61.29211 * 11 9 8 38 38 H 1.09004 * 109.44507 * 301.32802 * 11 9 8 39 39 H 1.09005 * 109.49695 * 178.68067 * 12 11 9 40 40 H 1.08995 * 109.52560 * 58.60106 * 12 11 9 41 41 H 1.09003 * 109.58951 * 294.84830 * 13 12 11 42 42 H 1.09003 * 109.70604 * 174.49222 * 13 12 11 43 43 H 0.97000 * 119.99702 * 5.81205 * 18 17 15 44 44 H 1.09008 * 109.46858 * 60.00121 * 25 23 14 45 45 H 1.08998 * 109.47149 * 179.97438 * 25 23 14 46 46 H 1.08999 * 109.46877 * 300.00339 * 25 23 14 47 47 H 1.08002 * 127.25031 * 179.75426 * 26 5 4 48 48 H 1.08995 * 115.55641 * 359.32753 * 28 27 3 49 49 H 1.08999 * 117.50171 * 0.02562 * 29 28 27 50 50 H 1.09006 * 117.49779 * 145.02340 * 29 28 27 51 51 H 1.08996 * 117.50249 * 252.51160 * 30 29 28 52 52 H 1.08996 * 117.51662 * 107.48106 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2638 2.0738 1.0539 5 6 2.6879 3.2753 0.7170 6 6 3.0721 4.3627 1.6399 7 8 3.4485 5.4308 1.1977 8 7 3.0053 4.1708 2.9723 9 6 3.3869 5.2490 3.8877 10 1 4.2128 5.8159 3.4580 11 6 2.1909 6.1777 4.1098 12 6 2.5978 7.3228 5.0400 13 6 3.0220 6.7482 6.3952 14 7 4.0739 5.7463 6.1758 15 6 5.2684 5.8318 6.8398 16 1 6.1707 5.4583 6.3784 17 6 5.3197 6.3985 8.1058 18 7 4.2397 6.4290 8.8575 19 14 6.9215 7.1181 8.7429 20 1 6.7126 7.6570 10.1108 21 1 7.9597 6.0571 8.7825 22 1 7.3657 8.2119 7.8420 23 6 3.8221 4.6541 5.2257 24 1 3.0314 4.0100 5.6106 25 6 5.1020 3.8389 5.0303 26 6 2.6995 3.3276 -0.6970 27 6 2.2754 2.1095 -1.1077 28 6 2.1127 1.6538 -2.5348 29 6 3.1018 2.1983 -3.5673 30 6 1.6539 2.6925 -3.5602 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.7046 3.3186 3.3251 37 1 1.3736 5.6156 4.5618 38 1 1.8654 6.5855 3.1527 39 1 1.7523 7.9966 5.1790 40 1 3.4312 7.8707 4.6002 41 1 2.1647 6.2784 6.8774 42 1 3.4054 7.5475 7.0295 43 1 3.4310 5.9817 8.5629 44 1 5.4166 3.4216 5.9869 45 1 4.9130 3.0291 4.3256 46 1 5.8881 4.4850 4.6396 47 1 2.9885 4.1627 -1.3180 48 1 1.7622 0.6299 -2.6644 49 1 3.8704 2.8859 -3.2143 50 1 3.4023 1.5325 -4.3764 51 1 1.0018 2.3519 -4.3645 52 1 1.4692 3.7054 -3.2024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993426461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:21 Heat of formation + Delta-G solvation = 60.116265 kcal Electronic energy + Delta-G solvation = -31022.340011 eV Core-core repulsion = 27023.818730 eV Total energy + Delta-G solvation = -3998.521281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.80697 -41.04141 -39.33675 -38.13768 -36.14544 -35.60330 -34.37626 -33.51643 -31.55760 -31.29651 -30.42689 -28.02541 -26.88406 -25.78663 -24.79307 -23.73630 -23.23558 -22.92993 -22.55646 -21.60781 -21.15710 -20.38784 -18.94709 -18.66050 -17.72873 -17.27717 -16.99074 -16.43080 -16.11070 -15.96452 -15.87071 -15.51162 -15.46673 -15.34834 -15.01907 -14.90334 -14.85856 -14.45217 -14.27088 -13.59991 -13.47735 -13.09314 -13.08297 -13.00915 -12.79928 -12.77114 -12.56788 -12.40830 -12.32258 -12.09616 -12.02983 -11.96278 -11.94388 -11.92430 -11.83835 -11.73438 -11.36669 -11.30919 -11.04194 -10.48767 -10.27971 -10.00099 -9.76592 -8.91632 -8.19218 -5.38992 0.45674 0.96484 1.43947 1.58881 1.66316 1.84645 2.05135 2.30169 2.67433 3.02681 3.18956 3.24659 3.43182 3.47899 3.73198 3.81702 3.91598 3.95358 3.99102 3.99915 4.06213 4.09396 4.20380 4.30624 4.32335 4.36022 4.46464 4.48189 4.62660 4.69508 4.70901 4.77193 4.79204 4.81608 4.81972 4.90456 4.99331 5.02214 5.05620 5.13595 5.16057 5.21104 5.23816 5.27035 5.27309 5.31048 5.32912 5.52024 5.81102 5.92827 6.39871 6.44230 6.86142 7.05827 7.12951 7.79552 8.23627 9.04999 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.002283 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.410479 B =12262.883165 C =12483.204267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.268 5.268 4 N -0.268 5.268 5 C -0.038 4.038 6 C 0.602 3.398 7 O -0.573 6.573 8 N -0.696 5.696 9 C 0.147 3.853 10 H 0.060 0.940 11 C -0.110 4.110 12 C -0.123 4.123 13 C 0.155 3.845 14 N -0.606 5.606 15 C -0.345 4.345 16 H 0.057 0.943 17 C -0.074 4.074 18 N -0.943 5.943 19 Si 1.111 2.889 20 H -0.292 1.292 21 H -0.276 1.276 22 H -0.284 1.284 23 C 0.168 3.832 24 H 0.030 0.970 25 C -0.123 4.123 26 C -0.202 4.202 27 C 0.060 3.940 28 C -0.104 4.104 29 C -0.160 4.160 30 C -0.158 4.158 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.012 0.988 42 H 0.047 0.953 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.040 0.960 47 H 0.154 0.846 48 H 0.145 0.855 49 H 0.086 0.914 50 H 0.125 0.875 51 H 0.125 0.875 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 -16.729 -26.392 32.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.057 5.057 4 N -0.105 5.105 5 C -0.196 4.196 6 C 0.388 3.612 7 O -0.451 6.451 8 N -0.346 5.346 9 C 0.041 3.959 10 H 0.078 0.922 11 C -0.148 4.148 12 C -0.163 4.163 13 C 0.029 3.971 14 N -0.331 5.331 15 C -0.475 4.475 16 H 0.074 0.926 17 C -0.270 4.270 18 N -0.585 5.585 19 Si 0.936 3.064 20 H -0.218 1.218 21 H -0.202 1.202 22 H -0.210 1.210 23 C 0.061 3.939 24 H 0.048 0.952 25 C -0.180 4.180 26 C -0.230 4.230 27 C -0.065 4.065 28 C -0.123 4.123 29 C -0.197 4.197 30 C -0.196 4.196 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.127 0.873 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.172 0.828 48 H 0.163 0.837 49 H 0.105 0.895 50 H 0.143 0.857 51 H 0.143 0.857 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.270 -15.969 -24.444 30.346 hybrid contribution -0.630 -0.287 -1.131 1.326 sum -8.900 -16.256 -25.575 31.584 Atomic orbital electron populations 1.22157 0.92555 1.05001 1.02591 1.22481 0.96694 0.75166 1.07305 1.45916 1.44673 1.13359 1.01735 1.73473 1.17658 1.04453 1.14896 1.21635 1.10397 0.93200 0.94354 1.17208 0.76698 0.85543 0.81782 1.90752 1.49217 1.27390 1.77711 1.45774 1.66461 1.17498 1.04859 1.21266 0.96772 0.88125 0.89752 0.92156 1.21695 0.97386 0.96685 0.99073 1.21920 1.00666 0.97495 0.96216 1.20872 0.89954 0.91627 0.94605 1.44318 1.15282 1.25522 1.48027 1.20135 0.86451 1.42359 0.98563 0.92571 1.27100 1.06240 1.01198 0.92479 1.70885 1.04244 1.45747 1.37626 0.82904 0.71900 0.76441 0.75170 1.21820 1.20165 1.21007 1.20575 0.96269 0.89095 0.87930 0.95205 1.21676 0.96838 0.98723 1.00808 1.21485 1.09528 0.99122 0.92836 1.20816 1.03675 0.91328 0.90679 1.20499 1.08207 1.00734 0.82880 1.23170 0.92977 1.03488 1.00085 1.23161 0.98119 0.98191 1.00107 0.93503 0.91607 0.87260 0.84912 0.87296 0.75257 0.91557 0.92315 0.90213 0.93318 0.97005 0.93422 0.93502 0.93295 0.91353 0.94067 0.82813 0.83701 0.89514 0.85682 0.85686 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 71.98 0.74 -0.47 16 2 C 0.10 0.89 6.74 86.38 0.58 1.48 16 3 N -0.27 -5.00 3.30 -334.59 -1.10 -6.10 16 4 N -0.27 -6.93 11.67 -48.18 -0.56 -7.49 16 5 C -0.04 -1.13 7.13 42.46 0.30 -0.83 16 6 C 0.60 21.51 7.79 86.75 0.68 22.18 16 7 O -0.57 -24.26 16.59 -3.95 -0.07 -24.33 16 8 N -0.70 -23.47 4.57 -445.85 -2.04 -25.51 16 9 C 0.15 5.75 1.97 44.93 0.09 5.84 16 10 H 0.06 2.73 7.58 -2.39 -0.02 2.71 16 11 C -0.11 -4.10 5.46 30.62 0.17 -3.94 16 12 C -0.12 -4.98 6.08 30.67 0.19 -4.79 16 13 C 0.15 7.52 4.71 86.36 0.41 7.93 16 14 N -0.61 -30.89 2.83 -676.02 -1.91 -32.80 16 15 C -0.35 -19.35 8.46 84.03 0.71 -18.64 16 16 H 0.06 3.14 6.30 -2.91 -0.02 3.13 16 17 C -0.07 -4.23 4.70 84.86 0.40 -3.83 16 18 N -0.94 -57.77 12.49 21.65 0.27 -57.50 16 19 Si 1.11 52.02 29.98 68.60 2.06 54.08 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C 0.17 7.16 3.02 44.83 0.14 7.30 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.12 -4.94 7.83 71.98 0.56 -4.38 16 26 C -0.20 -5.18 9.86 22.41 0.22 -4.96 16 27 C 0.06 1.11 6.60 41.40 0.27 1.39 16 28 C -0.10 -1.06 5.94 -11.54 -0.07 -1.13 16 29 C -0.16 -1.48 10.05 30.59 0.31 -1.17 16 30 C -0.16 -1.45 10.05 30.59 0.31 -1.14 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.13 0.31 7.12 -2.38 -0.02 0.29 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.41 12.33 8.33 -92.70 -0.77 11.56 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.79 8.14 -2.38 -0.02 2.78 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.01 0.59 7.84 -2.39 -0.02 0.57 16 42 H 0.05 2.60 6.45 -2.39 -0.02 2.59 16 43 H 0.26 15.87 6.71 -92.71 -0.62 15.25 16 44 H 0.05 2.09 7.63 -2.38 -0.02 2.07 16 45 H 0.07 2.31 7.79 -2.39 -0.02 2.29 16 46 H 0.04 1.75 7.44 -2.39 -0.02 1.73 16 47 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 48 H 0.15 0.60 7.17 -2.39 -0.02 0.59 16 49 H 0.09 1.11 7.95 -2.39 -0.02 1.09 16 50 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.09 1.09 7.96 -2.39 -0.02 1.08 16 Total: -1.00 -75.67 413.25 2.94 -72.74 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.29 Total: 26.06 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 6.00 Total: 0.86 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -5.34 Total: -129.40 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.07 Total: -24.33 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.06 Total: 54.08 kcal Total: -75.67 2.94 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993426461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.854 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds