Wall clock time and date at job start Wed Apr 1 2020 04:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47027 * 2 1 4 4 N 1.28445 * 125.19224 * 270.43522 * 3 2 1 5 5 C 1.30862 * 110.93085 * 180.15827 * 4 3 2 6 6 C 1.50700 * 126.07321 * 179.87490 * 5 4 3 7 7 C 1.39675 * 107.85603 * 359.61799 * 5 4 3 8 8 C 1.36598 * 125.19247 * 90.16941 * 3 2 1 9 9 C 1.47169 * 126.87785 * 359.97438 * 8 3 2 10 10 O 1.21623 * 120.00140 * 354.81232 * 9 8 3 11 11 N 1.34776 * 119.99744 * 174.81072 * 9 8 3 12 12 C 1.46496 * 120.00167 * 185.46871 * 11 9 8 13 13 C 1.53001 * 115.55187 * 180.02562 * 12 11 9 14 14 C 1.53040 * 109.46347 * 85.64904 * 13 12 11 15 15 C 1.53186 * 109.31480 * 178.61599 * 14 13 12 16 16 N 1.46923 * 108.77647 * 54.63549 * 15 14 13 17 17 C 1.36943 * 120.63129 * 126.37133 * 16 15 14 18 18 H 1.08000 * 119.99582 * 216.60874 * 17 16 15 19 19 C 1.38805 * 119.99899 * 36.60638 * 17 16 15 20 20 N 1.31617 * 120.00231 * 11.73471 * 19 17 16 21 21 Si 1.86798 * 119.99866 * 191.73439 * 19 17 16 22 22 H 1.48500 * 109.47067 * 90.00113 * 21 19 17 23 23 H 1.48499 * 109.47397 * 210.00239 * 21 19 17 24 24 H 1.48501 * 109.47419 * 330.00072 * 21 19 17 25 25 C 1.46929 * 118.73852 * 306.38902 * 16 15 14 26 26 C 1.53043 * 109.45791 * 325.58196 * 13 12 11 27 27 C 1.52993 * 117.49939 * 34.32877 * 12 11 9 28 28 C 1.53007 * 117.49838 * 325.66846 * 12 11 9 29 29 H 1.09003 * 109.47487 * 59.99638 * 1 2 3 30 30 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47162 * 299.99831 * 1 2 3 32 32 H 1.09006 * 109.46649 * 240.00173 * 2 1 3 33 33 H 1.08994 * 109.47699 * 120.00507 * 2 1 3 34 34 H 1.09003 * 109.47106 * 269.69719 * 6 5 4 35 35 H 1.08994 * 109.46748 * 149.69509 * 6 5 4 36 36 H 1.08998 * 109.46660 * 29.69611 * 6 5 4 37 37 H 1.08004 * 127.31599 * 180.20415 * 7 5 4 38 38 H 0.97007 * 119.99934 * 5.46879 * 11 9 8 39 39 H 1.08997 * 109.45843 * 205.60942 * 13 12 11 40 40 H 1.09004 * 109.49268 * 298.56902 * 14 13 12 41 41 H 1.09002 * 109.49887 * 58.66078 * 14 13 12 42 42 H 1.09003 * 109.58681 * 294.84941 * 15 14 13 43 43 H 1.08997 * 109.58720 * 174.42332 * 15 14 13 44 44 H 0.97004 * 119.99775 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.58944 * 293.82324 * 25 16 15 46 46 H 1.09000 * 109.58486 * 173.39519 * 25 16 15 47 47 H 1.09007 * 109.49787 * 301.33592 * 26 13 12 48 48 H 1.08996 * 109.49700 * 61.40108 * 26 13 12 49 49 H 1.09004 * 117.49726 * 0.02562 * 27 12 11 50 50 H 1.09004 * 117.50096 * 145.02195 * 27 12 11 51 51 H 1.08993 * 117.49473 * 214.98260 * 28 12 11 52 52 H 1.08997 * 117.49318 * 359.97438 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2575 2.0818 -1.0497 5 6 2.6857 3.2756 -0.7273 6 6 3.0690 4.3705 -1.6892 7 6 2.7188 3.3568 0.6667 8 6 2.2838 2.1223 1.1163 9 6 2.1362 1.6940 2.5165 10 8 1.6516 0.6082 2.7725 11 7 2.5381 2.5049 3.5152 12 6 2.5029 2.0326 4.9015 13 6 2.9809 3.0361 5.9529 14 6 1.8163 3.9417 6.3600 15 6 2.2897 4.9222 7.4376 16 7 3.4679 5.6428 6.9366 17 6 3.5006 7.0119 6.9364 18 1 3.9817 7.5404 6.1267 19 6 2.9153 7.7202 7.9768 20 7 2.5360 7.0918 9.0693 21 14 2.6659 9.5653 7.8263 22 1 1.3365 9.8376 7.2233 23 1 2.7346 10.1857 9.1738 24 1 3.7284 10.1397 6.9623 25 6 4.6104 4.8667 6.4354 26 6 4.1110 3.8869 5.3689 27 6 2.7988 0.5525 5.1512 28 6 1.3700 1.0826 5.2956 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.1306 4.2925 -1.9242 35 1 2.8678 5.3404 -1.2345 36 1 2.4859 4.2704 -2.6047 37 1 3.0202 4.2031 1.2662 38 1 2.8506 3.4014 3.3160 39 1 3.3459 2.4987 6.8282 40 1 1.4669 4.4980 5.4901 41 1 1.0025 3.3330 6.7541 42 1 2.5544 4.3725 8.3409 43 1 1.4938 5.6330 7.6599 44 1 2.1273 7.5869 9.7965 45 1 5.0643 4.3125 7.2570 46 1 5.3458 5.5410 5.9964 47 1 4.9306 3.2391 5.0577 48 1 3.7401 4.4432 4.5082 49 1 3.0201 -0.0698 4.2840 50 1 3.3341 0.2933 6.0647 51 1 0.9661 1.1722 6.3039 52 1 0.6508 0.8095 4.5235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000271497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:05 Heat of formation + Delta-G solvation = 83.117450 kcal Electronic energy + Delta-G solvation = -31565.963060 eV Core-core repulsion = 27568.439185 eV Total energy + Delta-G solvation = -3997.523875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.74208 -40.37187 -37.99202 -36.03717 -35.07370 -33.35726 -32.78450 -31.51213 -30.68426 -30.32535 -29.78713 -27.64722 -25.63099 -24.29238 -23.25740 -22.72040 -22.55398 -21.67315 -21.35438 -19.86582 -19.59743 -18.87186 -18.00829 -16.80801 -16.51837 -16.13966 -15.54667 -14.95346 -14.85695 -14.71311 -14.60534 -14.08202 -13.89276 -13.66863 -13.57719 -13.49065 -13.40007 -13.06690 -12.94389 -12.82978 -12.59301 -12.48632 -12.32949 -12.23596 -11.57453 -11.49807 -11.34386 -11.12785 -11.03876 -10.84636 -10.79260 -10.72249 -10.41743 -10.27560 -10.10720 -10.02540 -9.84954 -9.59224 -9.37732 -9.27468 -9.03484 -8.54645 -8.46638 -6.56163 -5.81263 -3.33657 1.09528 2.16311 2.37259 3.00924 3.05767 3.35333 3.42438 3.43270 4.07273 4.22277 4.33588 4.46694 4.70108 4.71382 4.78461 4.85642 4.98844 5.03446 5.16979 5.20015 5.32729 5.35188 5.39533 5.41231 5.46322 5.48088 5.56324 5.67538 5.67615 5.72395 5.80635 5.82284 5.86288 5.92639 6.08599 6.13405 6.29334 6.33478 6.40437 6.45139 6.50991 6.59215 6.63414 6.68625 6.72114 6.80900 6.94258 7.32162 7.38813 7.59935 7.79086 7.89708 8.03609 8.49057 9.21073 9.81131 10.43225 11.26702 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012569 B = 0.002898 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.120632 B = 9660.632098 C =11106.557877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.254 5.254 4 N -0.278 5.278 5 C 0.022 3.978 6 C -0.067 4.067 7 C -0.186 4.186 8 C -0.034 4.034 9 C 0.590 3.410 10 O -0.538 6.538 11 N -0.671 5.671 12 C 0.109 3.891 13 C -0.041 4.041 14 C -0.133 4.133 15 C 0.175 3.825 16 N -0.590 5.590 17 C -0.259 4.259 18 H 0.061 0.939 19 C 0.011 3.989 20 N -0.899 5.899 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.146 3.854 26 C -0.127 4.127 27 C -0.178 4.178 28 C -0.174 4.174 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.410 0.590 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.019 0.981 43 H 0.076 0.924 44 H 0.254 0.746 45 H 0.018 0.982 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.099 0.901 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -12.883 -16.764 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.042 5.042 4 N -0.112 5.112 5 C -0.134 4.134 6 C -0.125 4.125 7 C -0.215 4.215 8 C -0.163 4.163 9 C 0.376 3.624 10 O -0.417 6.417 11 N -0.321 5.321 12 C 0.022 3.978 13 C -0.060 4.060 14 C -0.172 4.172 15 C 0.050 3.950 16 N -0.313 5.313 17 C -0.389 4.389 18 H 0.079 0.921 19 C -0.189 4.189 20 N -0.542 5.542 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.019 3.981 26 C -0.167 4.167 27 C -0.217 4.217 28 C -0.212 4.212 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.178 0.822 38 H 0.248 0.752 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.118 0.882 50 H 0.112 0.888 51 H 0.112 0.888 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.489 -14.394 -17.322 22.571 hybrid contribution 0.095 1.823 0.581 1.916 sum -1.394 -12.571 -16.741 20.982 Atomic orbital electron populations 1.22071 0.93426 1.03426 1.03130 1.22138 0.96260 0.76504 1.05511 1.45743 1.44740 1.12240 1.01486 1.73104 1.18775 1.05651 1.13669 1.22005 1.03940 0.93680 0.93783 1.20093 1.01681 0.93955 0.96796 1.22189 1.07037 0.97222 0.95065 1.21416 1.11117 0.93933 0.89799 1.16905 0.78161 0.84426 0.82951 1.90728 1.44710 1.22140 1.84135 1.45106 1.64625 1.17515 1.04847 1.21000 1.04352 0.91057 0.81372 1.20789 0.96729 0.93946 0.94564 1.22255 0.95882 0.97836 1.01240 1.20682 0.90501 0.92547 0.91317 1.43950 1.11544 1.02029 1.73791 1.19093 1.35809 0.81376 1.02646 0.92133 1.25285 1.01156 0.97858 0.94590 1.69993 1.44155 1.35064 1.05030 0.86321 0.78201 0.85470 0.76900 1.21353 1.21695 1.20315 1.20903 0.90779 0.92797 0.93574 1.22049 0.96914 0.97974 0.99727 1.23399 0.99314 0.95895 1.03069 1.23436 0.92633 1.02474 1.02707 0.92017 0.90169 0.91413 0.88624 0.86739 0.90813 0.90366 0.91109 0.82164 0.75226 0.90115 0.92745 0.93043 0.96247 0.90574 0.93585 0.96418 0.92707 0.92835 0.92749 0.88222 0.88786 0.88789 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.12 1.12 6.46 -4.04 -0.03 1.10 16 3 N -0.25 -3.12 3.35 -57.14 -0.19 -3.31 16 4 N -0.28 -3.54 11.90 33.64 0.40 -3.14 16 5 C 0.02 0.25 7.22 -82.47 -0.60 -0.34 16 6 C -0.07 -0.54 10.45 36.01 0.38 -0.17 16 7 C -0.19 -2.15 10.44 -38.99 -0.41 -2.56 16 8 C -0.03 -0.44 6.96 -82.06 -0.57 -1.01 16 9 C 0.59 7.88 7.47 -12.63 -0.09 7.79 16 10 O -0.54 -7.74 10.27 5.26 0.05 -7.69 16 11 N -0.67 -8.71 5.38 -48.75 -0.26 -8.97 16 12 C 0.11 1.50 2.48 -131.82 -0.33 1.18 16 13 C -0.04 -0.63 2.28 -90.58 -0.21 -0.84 16 14 C -0.13 -2.37 5.22 -26.61 -0.14 -2.50 16 15 C 0.18 3.98 5.24 -3.72 -0.02 3.96 16 16 N -0.59 -14.10 2.95 -172.32 -0.51 -14.61 16 17 C -0.26 -6.89 9.51 -15.06 -0.14 -7.03 16 18 H 0.06 1.59 7.86 -52.49 -0.41 1.17 16 19 C 0.01 0.30 4.99 -17.43 -0.09 0.21 16 20 N -0.90 -25.64 11.53 55.49 0.64 -25.00 16 21 Si 0.90 21.21 29.57 -169.99 -5.03 16.18 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 26 C -0.13 -1.99 4.83 -26.61 -0.13 -2.12 16 27 C -0.18 -2.35 9.37 -26.70 -0.25 -2.60 16 28 C -0.17 -2.38 8.91 -26.69 -0.24 -2.62 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.16 6.42 -51.93 -0.33 0.83 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.16 1.53 7.58 -52.48 -0.40 1.13 16 38 H 0.41 4.98 5.69 -40.82 -0.23 4.75 16 39 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.85 7.24 -51.93 -0.38 0.47 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.96 6.56 -51.93 -0.34 1.61 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.83 6.50 -51.93 -0.34 0.49 16 49 H 0.10 1.38 6.56 -51.93 -0.34 1.04 16 50 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 51 H 0.09 1.24 7.60 -51.93 -0.39 0.84 16 52 H 0.11 1.61 6.19 -51.93 -0.32 1.29 16 LS Contribution 404.80 15.07 6.10 6.10 Total: -1.00 -30.55 404.80 -9.81 -40.36 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.51 Total: 5.83 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.50 Total: -5.76 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.08 Total: -55.02 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.05 Total: -7.69 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.55 -9.81 -40.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000271497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.477 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds