Wall clock time and date at job start Wed Apr 1 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47245 * 2 1 4 4 N 1.28445 * 125.18930 * 274.51763 * 3 2 1 5 5 C 1.30862 * 110.92579 * 179.81550 * 4 3 2 6 6 C 1.39677 * 107.86450 * 0.44181 * 5 4 3 7 7 C 1.36599 * 125.19092 * 94.81790 * 3 2 1 8 8 C 1.47166 * 126.88566 * 359.97438 * 7 3 2 9 9 O 1.21623 * 119.99841 * 25.83741 * 8 7 3 10 10 N 1.34773 * 120.00077 * 205.84746 * 8 7 3 11 11 C 1.46934 * 120.62829 * 0.57083 * 10 8 7 12 12 C 1.53621 * 108.54223 * 126.37279 * 11 10 8 13 13 C 1.53045 * 109.24450 * 54.85458 * 12 11 10 14 14 C 1.52992 * 109.46060 * 178.49127 * 13 12 11 15 15 H 1.09006 * 109.86907 * 172.83907 * 14 13 12 16 16 C 1.54323 * 109.88418 * 294.00663 * 14 13 12 17 17 C 1.55159 * 102.93994 * 141.61256 * 16 14 13 18 18 C 1.54910 * 101.58350 * 324.50175 * 17 16 14 19 19 N 1.47018 * 109.88502 * 51.82332 * 14 13 12 20 20 C 1.36929 * 125.65120 * 61.67483 * 19 14 13 21 21 H 1.08001 * 119.99948 * 299.54394 * 20 19 14 22 22 C 1.38811 * 120.00431 * 119.54467 * 20 19 14 23 23 N 1.31623 * 120.00340 * 184.38357 * 22 20 19 24 24 Si 1.86796 * 119.99783 * 4.37580 * 22 20 19 25 25 H 1.48504 * 109.47301 * 94.65982 * 24 22 20 26 26 H 1.48497 * 109.47372 * 214.66435 * 24 22 20 27 27 H 1.48501 * 109.47261 * 334.66252 * 24 22 20 28 28 C 1.53041 * 109.53711 * 298.51635 * 13 12 11 29 29 C 1.46927 * 120.63369 * 180.85564 * 10 8 7 30 30 H 1.08996 * 109.47034 * 55.00513 * 1 2 3 31 31 H 1.09005 * 109.46995 * 175.00960 * 1 2 3 32 32 H 1.08998 * 109.46938 * 295.00451 * 1 2 3 33 33 H 1.09007 * 109.46905 * 119.99767 * 2 1 3 34 34 H 1.09001 * 109.47240 * 239.99603 * 2 1 3 35 35 H 1.08002 * 126.07194 * 180.18250 * 5 4 3 36 36 H 1.07998 * 127.32083 * 179.71825 * 6 5 4 37 37 H 1.09000 * 109.58709 * 246.20263 * 11 10 8 38 38 H 1.09000 * 109.58810 * 6.63179 * 11 10 8 39 39 H 1.08998 * 109.63581 * 294.86744 * 12 11 10 40 40 H 1.08998 * 109.43325 * 174.72189 * 12 11 10 41 41 H 1.09006 * 109.45564 * 58.52953 * 13 12 11 42 42 H 1.08994 * 110.72659 * 259.97436 * 16 14 13 43 43 H 1.08998 * 110.72052 * 23.25432 * 16 14 13 44 44 H 1.09004 * 111.00497 * 206.42986 * 17 16 14 45 45 H 1.08997 * 111.03957 * 82.59311 * 17 16 14 46 46 H 1.09005 * 110.36432 * 278.17135 * 18 17 16 47 47 H 1.08995 * 110.46456 * 155.89690 * 18 17 16 48 48 H 0.96998 * 119.99873 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.49641 * 301.40685 * 28 13 12 50 50 H 1.09002 * 109.52198 * 181.33126 * 28 13 12 51 51 H 1.09000 * 109.58033 * 353.36989 * 29 10 8 52 52 H 1.09001 * 109.58526 * 113.79630 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1872 2.1066 -1.0465 5 6 2.6302 3.2952 -0.7247 6 6 2.7699 3.3388 0.6643 7 6 2.3692 2.0921 1.1124 8 6 2.3286 1.6261 2.5077 9 8 2.4190 0.4387 2.7551 10 7 2.1910 2.5150 3.5114 11 6 2.0678 3.9514 3.2275 12 6 0.8015 4.4791 3.9188 13 6 0.8602 4.1361 5.4091 14 6 -0.3811 4.6924 6.1094 15 1 -0.4106 4.3451 7.1423 16 6 -0.3581 6.2350 6.0715 17 6 -1.8478 6.5990 5.8352 18 6 -2.3054 5.4480 4.9049 19 7 -1.5929 4.2562 5.4004 20 6 -1.9938 2.9582 5.2294 21 1 -1.3603 2.2628 4.6988 22 6 -3.2145 2.5360 5.7378 23 7 -3.5617 1.2694 5.6494 24 14 -4.3644 3.7653 6.5477 25 1 -5.3451 4.2589 5.5477 26 1 -5.0863 3.1059 7.6654 27 1 -3.5760 4.9084 7.0737 28 6 0.9058 2.6163 5.5831 29 6 2.1676 2.0669 4.9104 30 1 -0.3633 0.5893 -0.8418 31 1 -0.3633 -1.0238 -0.0894 32 1 -0.3633 0.4344 0.9313 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.8527 4.0983 -1.4117 36 1 3.1172 4.1688 1.2617 37 1 2.9427 4.4761 3.6115 38 1 1.9897 4.1058 2.1513 39 1 -0.0790 4.0161 3.4733 40 1 0.7456 5.5608 3.7964 41 1 1.7541 4.5788 5.8487 42 1 -0.0085 6.6390 7.0215 43 1 0.2611 6.5913 5.2483 44 1 -1.9399 7.5641 5.3370 45 1 -2.4060 6.5901 6.7714 46 1 -2.0216 5.6581 3.8736 47 1 -3.3832 5.3037 4.9791 48 1 -4.4146 0.9744 6.0051 49 1 0.0243 2.1707 5.1219 50 1 0.9237 2.3716 6.6451 51 1 2.1553 0.9775 4.9449 52 1 3.0505 2.4411 5.4288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004423183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:23 Heat of formation + Delta-G solvation = 67.643879 kcal Electronic energy + Delta-G solvation = -32877.016585 eV Core-core repulsion = 28878.821726 eV Total energy + Delta-G solvation = -3998.194859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.60735 -41.14123 -39.84040 -37.77814 -35.58078 -34.64593 -34.20224 -32.64288 -31.75385 -31.10525 -30.79508 -29.39998 -26.47198 -25.93730 -24.88617 -24.44212 -23.54286 -22.60329 -22.18658 -21.30892 -20.61157 -19.93609 -18.90486 -18.30148 -17.77280 -17.47305 -16.98761 -16.65716 -16.28210 -16.10177 -15.62811 -15.49565 -15.19866 -15.15057 -14.86071 -14.65671 -14.48880 -14.18266 -14.05538 -13.94497 -13.73697 -13.57293 -13.21819 -13.15193 -13.04409 -12.91314 -12.61328 -12.49329 -12.41988 -12.36497 -11.98028 -11.91589 -11.72459 -11.55638 -11.51364 -11.21232 -11.14138 -10.90704 -10.87656 -10.57371 -10.25687 -9.92239 -9.60885 -8.36394 -7.88111 -5.88331 0.25689 1.27215 1.31411 1.37894 1.51647 1.68058 2.00101 2.15006 2.43006 3.11242 3.31953 3.50516 3.53809 3.90506 3.91511 4.00869 4.04365 4.09142 4.17481 4.21799 4.23416 4.26062 4.30807 4.37197 4.47310 4.50468 4.58881 4.61066 4.69090 4.76956 4.79628 4.82549 4.87568 4.89406 4.92830 5.00516 5.04531 5.08320 5.13114 5.19479 5.33427 5.43880 5.44946 5.53450 5.55466 5.58312 5.68902 5.75211 5.82598 6.05032 6.29967 6.49324 6.94118 7.06771 7.09932 7.56080 8.38955 9.00780 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.003892 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.804312 B = 7192.186654 C = 7937.302457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 N -0.268 5.268 4 N -0.301 5.301 5 C -0.001 4.001 6 C -0.188 4.188 7 C -0.055 4.055 8 C 0.579 3.421 9 O -0.585 6.585 10 N -0.582 5.582 11 C 0.074 3.926 12 C -0.110 4.110 13 C -0.078 4.078 14 C 0.151 3.849 15 H 0.017 0.983 16 C -0.113 4.113 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.611 5.611 20 C -0.229 4.229 21 H 0.045 0.955 22 C -0.014 4.014 23 N -0.954 5.954 24 Si 0.950 3.050 25 H -0.290 1.290 26 H -0.315 1.315 27 H -0.233 1.233 28 C -0.139 4.139 29 C 0.122 3.878 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.224 0.776 36 H 0.205 0.795 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.034 0.966 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.032 0.968 47 H 0.011 0.989 48 H 0.260 0.740 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.061 0.939 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.088 11.659 -7.541 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.013 4.013 3 N -0.056 5.056 4 N -0.133 5.133 5 C -0.176 4.176 6 C -0.216 4.216 7 C -0.183 4.183 8 C 0.367 3.633 9 O -0.467 6.467 10 N -0.313 5.313 11 C -0.046 4.046 12 C -0.148 4.148 13 C -0.098 4.098 14 C 0.046 3.954 15 H 0.035 0.965 16 C -0.151 4.151 17 C -0.168 4.168 18 C -0.013 4.013 19 N -0.338 5.338 20 C -0.358 4.358 21 H 0.062 0.938 22 C -0.211 4.211 23 N -0.597 5.597 24 Si 0.779 3.221 25 H -0.217 1.217 26 H -0.244 1.244 27 H -0.156 1.156 28 C -0.177 4.177 29 C 0.000 4.000 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.049 0.951 33 H 0.121 0.879 34 H 0.140 0.860 35 H 0.241 0.759 36 H 0.221 0.779 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.053 0.947 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.030 0.970 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.619 10.037 -8.271 19.567 hybrid contribution -1.383 -0.294 1.254 1.890 sum 13.236 9.743 -7.017 17.871 Atomic orbital electron populations 1.22049 0.93506 1.04596 1.01472 1.22274 0.95985 0.76695 1.06385 1.45962 1.44831 1.12813 1.02014 1.73153 1.19841 1.06254 1.14067 1.24291 1.02662 0.95093 0.95593 1.22931 1.06746 0.95971 0.95973 1.21504 1.11962 0.95626 0.89203 1.17330 0.76577 0.85241 0.84185 1.90716 1.53518 1.17519 1.84921 1.47871 1.69223 1.08488 1.05700 1.23071 0.99484 0.78050 1.04027 1.21840 0.96505 1.01468 0.95005 1.21406 0.98470 0.93787 0.96165 1.21325 0.86964 0.93856 0.93272 0.96513 1.22619 0.95947 0.93324 1.03201 1.22762 0.97091 0.97906 0.99049 1.22007 0.94420 0.88390 0.96444 1.44500 1.25773 1.00404 1.63127 1.18276 1.02344 0.85543 1.29685 0.93844 1.26718 1.01207 0.96338 0.96859 1.69956 1.23097 1.16658 1.50000 0.85678 0.78464 0.80558 0.77435 1.21732 1.24418 1.15601 1.22211 0.97708 0.97982 0.99780 1.21649 0.98956 0.99645 0.79770 0.91474 0.87942 0.95138 0.87933 0.86028 0.75923 0.77879 0.87462 0.86330 0.94664 0.88745 0.89124 0.89740 0.88691 0.88609 0.92871 0.94985 0.97043 0.93141 0.92113 0.92418 0.92073 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 10.24 71.98 0.74 -3.60 16 2 C 0.11 2.87 6.87 86.38 0.59 3.46 16 3 N -0.27 -7.87 3.35 -334.68 -1.12 -8.99 16 4 N -0.30 -8.06 11.90 -57.14 -0.68 -8.74 16 5 C 0.00 -0.01 12.03 85.18 1.02 1.01 16 6 C -0.19 -3.96 8.70 22.66 0.20 -3.76 16 7 C -0.05 -1.61 6.58 40.79 0.27 -1.34 16 8 C 0.58 19.77 7.57 86.59 0.66 20.43 16 9 O -0.59 -23.81 14.33 -4.10 -0.06 -23.87 16 10 N -0.58 -17.30 2.97 -822.24 -2.44 -19.74 16 11 C 0.07 1.61 5.48 86.51 0.47 2.08 16 12 C -0.11 -2.96 4.94 30.82 0.15 -2.81 16 13 C -0.08 -2.28 1.91 -10.77 -0.02 -2.30 16 14 C 0.15 5.17 2.93 45.34 0.13 5.30 16 15 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 16 C -0.11 -2.79 6.30 31.78 0.20 -2.59 16 17 C -0.13 -3.70 6.93 31.99 0.22 -3.47 16 18 C 0.11 4.24 6.01 86.85 0.52 4.76 16 19 N -0.61 -26.48 1.37 -668.27 -0.92 -27.40 16 20 C -0.23 -12.50 8.79 84.03 0.74 -11.76 16 21 H 0.04 2.73 5.48 -2.91 -0.02 2.71 16 22 C -0.01 -0.82 5.50 84.86 0.47 -0.35 16 23 N -0.95 -60.42 13.97 21.65 0.30 -60.12 16 24 Si 0.95 46.58 25.33 68.60 1.74 48.32 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.32 -15.93 7.11 99.48 0.71 -15.23 16 27 H -0.23 -10.36 5.33 99.48 0.53 -9.83 16 28 C -0.14 -5.00 4.98 30.67 0.15 -4.85 16 29 C 0.12 3.78 6.43 86.36 0.56 4.34 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 3.14 5.99 -2.38 -0.01 3.13 16 34 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.22 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.20 2.73 5.90 -2.91 -0.02 2.71 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.12 2.33 3.37 -2.39 -0.01 2.32 16 39 H 0.03 1.31 7.26 -2.39 -0.02 1.30 16 40 H 0.09 2.00 6.39 -2.39 -0.02 1.98 16 41 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.85 6.14 -2.39 -0.01 1.83 16 44 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.05 1.64 7.07 -2.39 -0.02 1.63 16 46 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.01 0.49 4.73 -2.39 -0.01 0.48 16 48 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 49 H 0.06 2.92 4.20 -2.38 -0.01 2.91 16 50 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.06 2.22 7.00 -2.39 -0.02 2.21 16 52 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -77.39 382.54 4.66 -72.74 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.76 Total: 23.27 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 7.07 Total: 4.54 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -4.85 Total: -124.99 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.74 Total: 48.32 kcal Total: -77.39 4.66 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004423183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.380 kcal (2) G-P(sol) polarization free energy of solvation -77.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds