Wall clock time and date at job start Wed Apr 1 2020 04:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46496 * 109.46990 * 2 1 4 4 C 1.34263 * 125.75465 * 125.31748 * 3 2 1 5 5 C 1.38047 * 107.41452 * 180.14442 * 4 3 2 6 6 C 1.47428 * 126.41228 * 179.86755 * 5 4 3 7 7 O 1.21599 * 120.00476 * 205.27465 * 6 5 4 8 8 N 1.34782 * 119.99725 * 25.27608 * 6 5 4 9 9 C 1.46500 * 120.00238 * 5.72517 * 8 6 5 10 10 C 1.46502 * 120.00005 * 185.72134 * 8 6 5 11 11 C 1.53350 * 109.41642 * 240.13089 * 10 8 6 12 12 C 1.53199 * 109.14932 * 178.67486 * 11 10 8 13 13 N 1.46922 * 108.89146 * 54.57091 * 12 11 10 14 14 C 1.36936 * 120.62816 * 126.30262 * 13 12 11 15 15 H 1.08000 * 119.99771 * 324.80371 * 14 13 12 16 16 C 1.38807 * 120.00314 * 144.80545 * 14 13 12 17 17 N 1.31624 * 120.00108 * 4.60612 * 16 14 13 18 18 Si 1.86803 * 120.00454 * 184.60719 * 16 14 13 19 19 H 1.48495 * 109.47215 * 89.99423 * 18 16 14 20 20 H 1.48498 * 109.47427 * 210.00170 * 18 16 14 21 21 H 1.48506 * 109.46682 * 329.99913 * 18 16 14 22 22 C 1.46923 * 118.74231 * 306.32750 * 13 12 11 23 23 C 1.53031 * 109.46223 * 120.00020 * 10 8 6 24 24 C 1.41285 * 107.17235 * 359.60825 * 5 4 3 25 25 C 1.50702 * 125.98842 * 180.20236 * 24 5 4 26 26 C 1.52997 * 117.49829 * 188.62119 * 25 24 5 27 27 C 1.53001 * 117.49468 * 119.99901 * 25 24 5 28 28 N 1.30448 * 108.02302 * 0.24268 * 24 5 4 29 29 H 1.08999 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46717 * 300.00140 * 1 2 3 31 31 H 1.08991 * 109.47115 * 59.99975 * 1 2 3 32 32 H 1.08997 * 109.46717 * 239.99859 * 2 1 3 33 33 H 1.08998 * 109.47176 * 119.99652 * 2 1 3 34 34 H 1.07993 * 126.29027 * 359.97438 * 4 3 2 35 35 H 1.08999 * 109.47126 * 275.11244 * 9 8 6 36 36 H 1.08998 * 109.47007 * 35.11134 * 9 8 6 37 37 H 1.09001 * 109.47346 * 155.11253 * 9 8 6 38 38 H 1.08999 * 109.45615 * 0.02562 * 10 8 6 39 39 H 1.08999 * 109.68776 * 58.71220 * 11 10 8 40 40 H 1.09002 * 109.47307 * 298.50630 * 11 10 8 41 41 H 1.09010 * 109.58112 * 294.71716 * 12 11 10 42 42 H 1.08992 * 109.58787 * 174.43824 * 12 11 10 43 43 H 0.96998 * 120.00034 * 180.02562 * 17 16 14 44 44 H 1.09005 * 109.58690 * 173.39514 * 22 13 12 45 45 H 1.09005 * 109.58641 * 293.67120 * 22 13 12 46 46 H 1.09002 * 109.50012 * 61.43415 * 23 10 8 47 47 H 1.09004 * 109.49891 * 301.34056 * 23 10 8 48 48 H 1.08994 * 115.55024 * 334.33590 * 25 24 5 49 49 H 1.09000 * 117.50158 * 0.02562 * 26 25 24 50 50 H 1.09008 * 117.49578 * 145.02525 * 26 25 24 51 51 H 1.08998 * 117.50012 * 214.97657 * 27 25 24 52 52 H 1.09003 * 117.50306 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8737 1.9109 0.8891 5 6 3.0712 3.2309 0.5365 6 6 3.9332 4.2032 1.2331 7 8 3.7008 5.3936 1.1460 8 7 4.9789 3.7726 1.9663 9 6 5.3349 2.3515 1.9706 10 6 5.7596 4.7256 2.7591 11 6 7.2179 4.7091 2.2849 12 6 8.0214 5.7312 3.0951 13 7 7.8471 5.4470 4.5260 14 6 8.9343 5.2745 5.3405 15 1 9.8229 4.7927 4.9602 16 6 8.8943 5.7189 6.6549 17 7 7.7820 6.2237 7.1455 18 14 10.4189 5.6007 7.7278 19 1 11.2171 6.8456 7.5925 20 1 10.0141 5.4238 9.1455 21 1 11.2376 4.4386 7.2980 22 6 6.4842 5.3509 5.0663 23 6 5.6956 4.3328 4.2367 24 6 2.2972 3.4740 -0.6202 25 6 2.2044 4.7808 -1.3651 26 6 1.1554 4.8891 -2.4735 27 6 2.6396 4.7902 -2.8319 28 7 1.6764 2.3693 -0.9299 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3224 1.3992 1.7275 35 1 4.7313 1.8280 2.7121 36 1 5.1475 1.9270 0.9843 37 1 6.3906 2.2421 2.2187 38 1 5.3483 5.7269 2.6313 39 1 7.2629 4.9672 1.2268 40 1 7.6377 3.7145 2.4355 41 1 7.6609 6.7363 2.8756 42 1 9.0769 5.6565 2.8336 43 1 7.7542 6.5345 8.0638 44 1 6.5252 5.0227 6.1049 45 1 5.9992 6.3255 5.0100 46 1 6.1295 3.3417 4.3689 47 1 4.6564 4.3222 4.5657 48 1 2.4070 5.6741 -0.7743 49 1 0.5321 4.0154 -2.6638 50 1 0.6675 5.8540 -2.6121 51 1 3.1280 5.6898 -3.2062 52 1 2.9934 3.8513 -3.2580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005454935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:38 Heat of formation + Delta-G solvation = 76.053244 kcal Electronic energy + Delta-G solvation = -31215.225187 eV Core-core repulsion = 27217.394986 eV Total energy + Delta-G solvation = -3997.830202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.58139 -40.72205 -38.82550 -38.12901 -36.49067 -35.13895 -34.31185 -32.26765 -31.54336 -31.07433 -30.33132 -28.02074 -26.96616 -25.63905 -24.62778 -23.79978 -23.30979 -23.07592 -22.58609 -21.01412 -20.52444 -19.83028 -18.73461 -18.06701 -17.60698 -17.07010 -16.74609 -16.65720 -16.30827 -15.91147 -15.67386 -15.60382 -15.30519 -14.96748 -14.82716 -14.69821 -14.24649 -14.18173 -14.02091 -13.69541 -13.44067 -13.22657 -13.12839 -13.03746 -12.80002 -12.77084 -12.69334 -12.49859 -12.47035 -12.42445 -12.03781 -11.93290 -11.86153 -11.82120 -11.72478 -11.45588 -11.34788 -11.30140 -10.74558 -10.53063 -10.17812 -9.70092 -9.43285 -8.56843 -7.84443 -5.41326 0.55999 1.03448 1.39396 1.48884 1.51071 1.59266 2.08065 2.32458 2.51552 3.00118 3.28089 3.31481 3.52308 3.69668 3.79142 3.85135 3.95164 4.07312 4.08684 4.10759 4.12997 4.24501 4.28742 4.37874 4.38865 4.47907 4.51441 4.63055 4.63944 4.69028 4.72542 4.77904 4.80537 4.87266 4.92342 4.93276 4.94283 5.09064 5.10334 5.19069 5.19760 5.22061 5.23823 5.33237 5.43725 5.55155 5.66409 5.69252 5.82464 5.93489 6.47396 6.48493 6.62110 7.19094 7.28834 7.85369 8.41235 9.19674 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002420 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.973091 B =11567.187066 C =12473.382491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.352 5.352 4 C 0.116 3.884 5 C -0.309 4.309 6 C 0.587 3.413 7 O -0.589 6.589 8 N -0.604 5.604 9 C 0.068 3.932 10 C 0.158 3.842 11 C -0.121 4.121 12 C 0.144 3.856 13 N -0.610 5.610 14 C -0.262 4.262 15 H 0.070 0.930 16 C -0.047 4.047 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.288 1.288 20 H -0.294 1.294 21 H -0.265 1.265 22 C 0.176 3.824 23 C -0.126 4.126 24 C 0.145 3.855 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.151 4.151 28 N -0.313 5.313 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.223 0.777 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.006 0.994 42 H 0.063 0.937 43 H 0.250 0.750 44 H 0.075 0.925 45 H -0.017 1.017 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.099 0.901 50 H 0.112 0.888 51 H 0.111 0.889 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.094 -17.280 -17.418 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.002 4.002 3 N -0.130 5.130 4 C -0.037 4.037 5 C -0.324 4.324 6 C 0.378 3.622 7 O -0.471 6.471 8 N -0.334 5.334 9 C -0.074 4.074 10 C 0.054 3.946 11 C -0.161 4.161 12 C 0.018 3.982 13 N -0.334 5.334 14 C -0.392 4.392 15 H 0.088 0.912 16 C -0.242 4.242 17 N -0.582 5.582 18 Si 0.798 3.202 19 H -0.215 1.215 20 H -0.220 1.220 21 H -0.190 1.190 22 C 0.050 3.950 23 C -0.166 4.166 24 C -0.021 4.021 25 C -0.131 4.131 26 C -0.188 4.188 27 C -0.189 4.189 28 N -0.134 5.134 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.153 0.847 34 H 0.240 0.760 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.002 0.998 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.131 0.869 49 H 0.118 0.882 50 H 0.131 0.869 51 H 0.129 0.871 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.101 -17.400 -18.118 28.807 hybrid contribution 1.209 1.068 1.612 2.280 sum -12.892 -16.332 -16.506 26.559 Atomic orbital electron populations 1.22030 0.93580 1.04225 1.02174 1.22295 0.96385 0.74863 1.06657 1.48909 1.33358 1.11223 1.19554 1.23942 0.91898 0.92462 0.95359 1.20072 1.12259 0.95508 1.04519 1.17712 0.79767 0.87136 0.77569 1.90690 1.73187 1.18789 1.64402 1.47869 1.29678 1.09825 1.46067 1.22255 1.02737 0.79436 1.02976 1.20831 0.91125 0.92474 0.90143 1.22216 0.94143 1.00857 0.98856 1.21002 0.98343 0.94728 0.84136 1.44256 1.02112 1.82693 1.04351 1.19495 0.94593 1.31581 0.93579 0.91237 1.26098 0.99586 0.98272 1.00224 1.70087 1.26717 1.46269 1.15080 0.85232 0.79512 0.78005 0.77454 1.21488 1.22040 1.18951 1.20703 0.83302 0.93301 0.97733 1.22301 0.99372 1.00711 0.94178 1.21496 0.93228 0.93759 0.93646 1.20473 1.08556 0.93057 0.91056 1.23011 0.91880 1.04174 0.99750 1.23013 0.97977 1.03946 0.93980 1.76978 1.24434 0.96979 1.15049 0.87867 0.93107 0.93049 0.87954 0.84666 0.76042 0.90343 0.89552 0.90136 0.92047 0.91510 0.90748 0.97638 0.91828 0.94024 0.90698 0.99842 0.91229 0.92716 0.86872 0.88224 0.86925 0.87061 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.09 71.99 0.73 -0.65 16 2 C 0.12 0.86 7.21 86.38 0.62 1.48 16 3 N -0.35 -5.96 3.65 -346.30 -1.26 -7.22 16 4 C 0.12 2.04 9.26 84.28 0.78 2.82 16 5 C -0.31 -8.27 5.56 -20.15 -0.11 -8.38 16 6 C 0.59 19.47 7.57 86.66 0.66 20.12 16 7 O -0.59 -24.57 14.68 -4.03 -0.06 -24.62 16 8 N -0.60 -17.70 2.76 -825.75 -2.28 -19.98 16 9 C 0.07 1.27 7.91 127.77 1.01 2.28 16 10 C 0.16 5.71 2.47 45.12 0.11 5.82 16 11 C -0.12 -4.20 5.35 30.78 0.16 -4.03 16 12 C 0.14 6.16 6.50 86.37 0.56 6.72 16 13 N -0.61 -30.95 3.00 -699.10 -2.10 -33.05 16 14 C -0.26 -14.26 9.55 84.03 0.80 -13.46 16 15 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 16 C -0.05 -2.58 5.33 84.86 0.45 -2.13 16 17 N -0.94 -55.29 10.59 21.65 0.23 -55.06 16 18 Si 0.97 44.29 29.56 68.60 2.03 46.32 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 C 0.18 8.76 5.27 86.36 0.46 9.22 16 23 C -0.13 -4.84 5.34 30.67 0.16 -4.67 16 24 C 0.14 3.97 6.79 43.51 0.30 4.26 16 25 C -0.11 -2.96 5.88 -11.54 -0.07 -3.03 16 26 C -0.15 -3.06 10.14 30.59 0.31 -2.75 16 27 C -0.15 -3.14 10.23 30.60 0.31 -2.83 16 28 N -0.31 -7.44 11.91 -46.68 -0.56 -8.00 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.14 0.08 8.06 -2.39 -0.02 0.06 16 34 H 0.22 2.13 5.53 -2.91 -0.02 2.11 16 35 H 0.08 1.07 6.82 -2.39 -0.02 1.06 16 36 H 0.09 1.30 6.22 -2.39 -0.01 1.29 16 37 H 0.08 1.55 6.47 -2.39 -0.02 1.53 16 38 H 0.06 2.67 6.91 -2.39 -0.02 2.65 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 2.38 6.73 -2.39 -0.02 2.37 16 41 H 0.01 0.25 8.14 -2.38 -0.02 0.24 16 42 H 0.06 2.58 7.93 -2.39 -0.02 2.56 16 43 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.07 4.18 5.88 -2.38 -0.01 4.17 16 45 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 46 H 0.07 2.49 7.72 -2.39 -0.02 2.47 16 47 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 48 H 0.11 3.59 6.74 -2.39 -0.02 3.57 16 49 H 0.10 2.01 7.90 -2.39 -0.02 2.00 16 50 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 51 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.56 406.57 4.16 -72.40 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.91 Total: 18.41 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 7.25 Total: 10.81 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -5.97 Total: -123.31 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -76.56 4.16 -72.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005454935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.456 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds