Wall clock time and date at job start Wed Apr 1 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46943 * 2 1 4 4 N 1.28465 * 124.88537 * 270.02448 * 3 2 1 5 5 C 1.31804 * 110.07388 * 179.97438 * 4 3 2 6 6 C 1.47709 * 126.52018 * 180.02562 * 5 4 3 7 7 O 1.21568 * 120.00173 * 173.11648 * 6 5 4 8 8 N 1.34776 * 120.00216 * 353.12236 * 6 5 4 9 9 C 1.46506 * 119.99539 * 5.20912 * 8 6 5 10 10 C 1.46496 * 120.00665 * 185.21068 * 8 6 5 11 11 C 1.53042 * 109.46393 * 240.02830 * 10 8 6 12 12 C 1.53185 * 109.31242 * 178.59820 * 11 10 8 13 13 N 1.46927 * 108.76900 * 54.65584 * 12 11 10 14 14 C 1.36931 * 120.63603 * 126.40238 * 13 12 11 15 15 H 1.08007 * 119.99930 * 327.60813 * 14 13 12 16 16 C 1.38816 * 120.00289 * 147.60339 * 14 13 12 17 17 N 1.31615 * 119.99804 * 165.86174 * 16 14 13 18 18 Si 1.86799 * 119.99660 * 345.86881 * 16 14 13 19 19 H 1.48498 * 109.47330 * 87.52647 * 18 16 14 20 20 H 1.48506 * 109.46762 * 207.52529 * 18 16 14 21 21 H 1.48498 * 109.47199 * 327.52315 * 18 16 14 22 22 C 1.46930 * 118.73501 * 306.38059 * 13 12 11 23 23 C 1.53034 * 109.46365 * 119.96684 * 10 8 6 24 24 C 1.41502 * 106.96124 * 359.76749 * 5 4 3 25 25 C 1.35033 * 124.88343 * 90.00432 * 3 2 1 26 26 C 1.50703 * 126.38432 * 359.97438 * 25 3 2 27 27 C 1.53000 * 117.49741 * 146.37967 * 26 25 3 28 28 C 1.53001 * 60.00062 * 107.48918 * 27 26 25 29 29 H 1.08996 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47151 * 299.99998 * 1 2 3 31 31 H 1.08996 * 109.47280 * 59.99759 * 1 2 3 32 32 H 1.08994 * 109.46664 * 240.00331 * 2 1 3 33 33 H 1.08996 * 109.47280 * 120.00241 * 2 1 3 34 34 H 1.08997 * 109.47327 * 84.77773 * 9 8 6 35 35 H 1.09004 * 109.46574 * 204.77578 * 9 8 6 36 36 H 1.08996 * 109.47360 * 324.76941 * 9 8 6 37 37 H 1.09003 * 109.45671 * 359.97438 * 10 8 6 38 38 H 1.09004 * 109.48878 * 298.56203 * 11 10 8 39 39 H 1.08995 * 109.49665 * 58.65613 * 11 10 8 40 40 H 1.08997 * 109.60208 * 294.86017 * 12 11 10 41 41 H 1.09004 * 109.70276 * 174.50356 * 12 11 10 42 42 H 0.97003 * 119.99539 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58758 * 293.82147 * 22 13 12 44 44 H 1.08994 * 109.70134 * 173.46534 * 22 13 12 45 45 H 1.09005 * 109.50107 * 301.34468 * 23 10 8 46 46 H 1.09003 * 109.50004 * 61.43544 * 23 10 8 47 47 H 1.08009 * 127.24781 * 180.24579 * 24 5 4 48 48 H 1.08996 * 115.56506 * 0.68744 * 26 25 3 49 49 H 1.09001 * 117.49649 * 214.97625 * 27 26 25 50 50 H 1.08999 * 117.49713 * 359.97438 * 27 26 25 51 51 H 1.09000 * 117.49812 * 252.51173 * 28 27 26 52 52 H 1.09004 * 117.52240 * 107.48196 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2628 2.0741 -1.0538 5 6 2.6871 3.2757 -0.7169 6 6 3.0704 4.3634 -1.6398 7 8 3.3271 5.4686 -1.2034 8 7 3.1356 4.1306 -2.9657 9 6 2.7170 2.8335 -3.5030 10 6 3.6251 5.1743 -3.8696 11 6 2.5311 5.5287 -4.8793 12 6 3.0339 6.6446 -5.8004 13 7 4.3019 6.2198 -6.4091 14 6 4.4650 6.2413 -7.7685 15 1 3.6219 6.0523 -8.4166 16 6 5.7139 6.5060 -8.3137 17 7 5.9426 6.2577 -9.5858 18 14 7.0697 7.2145 -7.2417 19 1 7.8089 6.1079 -6.5827 20 1 8.0055 8.0024 -8.0836 21 1 6.4727 8.0963 -6.2068 22 6 5.3918 5.7719 -5.5314 23 6 4.8623 4.6659 -4.6131 24 6 2.6998 3.3275 0.6972 25 6 2.2758 2.1093 1.1077 26 6 2.1141 1.6532 2.5349 27 6 3.1037 2.1976 3.5670 28 6 1.6556 2.6916 3.5608 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6382 2.8358 -3.6588 35 1 3.2208 2.6540 -4.4528 36 1 2.9806 2.0457 -2.7974 37 1 3.8869 6.0611 -3.2923 38 1 2.2861 4.6485 -5.4740 39 1 1.6420 5.8685 -4.3482 40 1 3.1935 7.5535 -5.2202 41 1 2.2988 6.8349 -6.5824 42 1 6.8152 6.4430 -9.9668 43 1 5.7437 6.6096 -4.9292 44 1 6.2132 5.3845 -6.1340 45 1 5.6328 4.3915 -3.8924 46 1 4.5952 3.7940 -5.2103 47 1 2.9893 4.1624 1.3182 48 1 1.7641 0.6291 2.6646 49 1 3.4048 1.5316 4.3756 50 1 3.8719 2.8854 3.2136 51 1 1.4710 3.7047 3.2034 52 1 1.0037 2.3508 4.3652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005492120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:25 Heat of formation + Delta-G solvation = 86.106587 kcal Electronic energy + Delta-G solvation = -31141.080457 eV Core-core repulsion = 27143.686201 eV Total energy + Delta-G solvation = -3997.394256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.81588 -41.08867 -39.17564 -38.13474 -36.69589 -35.60380 -34.36085 -32.41535 -32.02335 -31.37416 -30.76231 -28.01253 -27.18852 -25.54635 -24.79047 -24.42144 -23.60254 -23.22983 -22.75521 -21.34448 -20.69291 -20.05093 -18.82993 -18.35546 -17.83914 -17.42439 -17.22796 -16.75526 -16.11864 -16.01681 -15.94812 -15.47761 -15.40402 -15.27727 -15.00486 -14.66595 -14.61251 -14.44383 -14.24813 -13.99052 -13.75700 -13.49989 -13.46498 -13.33029 -13.06079 -12.76285 -12.66093 -12.53033 -12.40511 -12.27730 -12.20612 -12.03089 -11.97275 -11.82272 -11.71166 -11.50596 -11.42022 -11.33545 -11.10078 -10.73240 -10.16776 -9.75077 -9.64052 -8.91311 -8.17229 -5.56793 0.46573 0.97479 1.28379 1.40084 1.43639 1.49220 1.94212 2.27123 2.39877 3.03464 3.07790 3.16062 3.27997 3.44702 3.62326 3.80657 3.92187 3.96149 4.00326 4.01883 4.10159 4.16666 4.24965 4.26635 4.32324 4.34825 4.44222 4.47679 4.58710 4.64465 4.67892 4.72311 4.78715 4.82237 4.82795 4.83654 4.89152 4.95343 5.01010 5.03057 5.03606 5.11966 5.17167 5.23001 5.27323 5.29570 5.37526 5.54314 5.86262 5.89031 6.13249 6.30583 6.81880 6.89565 7.08432 7.58252 8.01840 9.02467 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.002361 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.786740 B =11855.614802 C =12415.701800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.271 5.271 4 N -0.258 5.258 5 C -0.036 4.036 6 C 0.594 3.406 7 O -0.577 6.577 8 N -0.593 5.593 9 C 0.077 3.923 10 C 0.152 3.848 11 C -0.124 4.124 12 C 0.147 3.853 13 N -0.619 5.619 14 C -0.246 4.246 15 H 0.055 0.945 16 C -0.031 4.031 17 N -0.958 5.958 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.309 1.309 21 H -0.266 1.266 22 C 0.122 3.878 23 C -0.127 4.127 24 C -0.202 4.202 25 C 0.061 3.939 26 C -0.103 4.103 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.262 0.738 43 H 0.029 0.971 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.152 0.848 48 H 0.145 0.855 49 H 0.124 0.876 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 -18.423 30.136 37.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 N -0.060 5.060 4 N -0.095 5.095 5 C -0.193 4.193 6 C 0.382 3.618 7 O -0.456 6.456 8 N -0.323 5.323 9 C -0.066 4.066 10 C 0.049 3.951 11 C -0.163 4.163 12 C 0.022 3.978 13 N -0.344 5.344 14 C -0.376 4.376 15 H 0.073 0.927 16 C -0.226 4.226 17 N -0.604 5.604 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.238 1.238 21 H -0.191 1.191 22 C -0.004 4.004 23 C -0.167 4.167 24 C -0.230 4.230 25 C -0.064 4.064 26 C -0.123 4.123 27 C -0.198 4.198 28 C -0.197 4.197 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.170 0.830 48 H 0.162 0.838 49 H 0.142 0.858 50 H 0.105 0.895 51 H 0.105 0.895 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.743 -18.649 29.261 36.631 hybrid contribution 1.079 1.283 0.123 1.681 sum -10.664 -17.365 29.384 35.759 Atomic orbital electron populations 1.22151 0.92635 1.04925 1.02586 1.22464 0.96619 0.75206 1.07304 1.46087 1.44519 1.13447 1.01938 1.73638 1.17843 1.04233 1.13752 1.21597 1.10335 0.93199 0.94190 1.17387 0.76642 0.86111 0.81692 1.90733 1.52652 1.24753 1.77448 1.47892 1.62902 1.16160 1.05363 1.22193 1.00156 0.83623 1.00580 1.20914 0.93915 0.90417 0.89877 1.22169 0.97360 1.00075 0.96733 1.21045 0.87200 0.94440 0.95111 1.44476 1.12383 1.75492 1.02052 1.18834 0.95984 1.41063 0.81699 0.92743 1.25995 1.00461 0.99721 0.96376 1.69900 1.23686 1.52599 1.14194 0.85939 0.79324 0.78948 0.78107 1.19712 1.23814 1.19119 1.21388 0.91539 0.95071 0.92356 1.22209 0.97089 0.99275 0.98080 1.21453 1.09656 0.99064 0.92860 1.20784 1.03598 0.91347 0.90658 1.20498 1.08071 1.00670 0.83015 1.23163 0.92957 1.03496 1.00139 1.23157 0.98125 0.98218 1.00167 0.87379 0.91788 0.93352 0.87079 0.85145 0.92134 0.90899 0.88022 0.90251 0.91360 0.90848 0.95135 0.91559 0.92873 0.95327 0.92298 0.91261 0.91003 0.83007 0.83757 0.85772 0.89506 0.89534 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.24 71.98 0.74 -0.23 16 2 C 0.10 0.72 6.74 86.38 0.58 1.30 16 3 N -0.27 -4.55 3.30 -334.60 -1.10 -5.66 16 4 N -0.26 -6.03 8.47 -48.18 -0.41 -6.43 16 5 C -0.04 -1.01 6.83 42.46 0.29 -0.72 16 6 C 0.59 20.33 7.67 86.75 0.67 21.00 16 7 O -0.58 -23.47 16.27 -3.93 -0.06 -23.54 16 8 N -0.59 -18.77 2.76 -826.01 -2.28 -21.05 16 9 C 0.08 1.97 8.78 127.77 1.12 3.09 16 10 C 0.15 5.34 2.47 45.02 0.11 5.46 16 11 C -0.12 -4.25 5.34 30.67 0.16 -4.09 16 12 C 0.15 6.00 6.52 86.36 0.56 6.56 16 13 N -0.62 -30.07 2.72 -699.09 -1.90 -31.98 16 14 C -0.25 -14.17 10.04 84.04 0.84 -13.33 16 15 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 16 C -0.03 -1.82 5.32 84.86 0.45 -1.37 16 17 N -0.96 -60.85 13.97 21.65 0.30 -60.54 16 18 Si 0.95 48.09 24.28 68.60 1.67 49.75 16 19 H -0.27 -12.90 6.48 99.48 0.65 -12.25 16 20 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 21 H -0.27 -13.23 6.64 99.48 0.66 -12.57 16 22 C 0.12 5.43 4.17 86.36 0.36 5.79 16 23 C -0.13 -4.65 5.32 30.67 0.16 -4.49 16 24 C -0.20 -4.93 9.86 22.41 0.22 -4.70 16 25 C 0.06 1.05 6.60 41.40 0.27 1.32 16 26 C -0.10 -0.95 5.94 -11.54 -0.07 -1.02 16 27 C -0.16 -1.36 10.05 30.59 0.31 -1.05 16 28 C -0.16 -1.35 10.05 30.60 0.31 -1.04 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.13 0.13 7.12 -2.39 -0.02 0.12 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.86 6.47 -2.38 -0.02 1.84 16 36 H 0.10 2.46 5.20 -2.39 -0.01 2.45 16 37 H 0.08 3.12 6.91 -2.39 -0.02 3.10 16 38 H 0.07 2.33 7.72 -2.38 -0.02 2.31 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 41 H 0.07 2.68 7.93 -2.38 -0.02 2.66 16 42 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.03 1.28 6.95 -2.39 -0.02 1.26 16 44 H 0.06 2.82 4.59 -2.39 -0.01 2.81 16 45 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.07 2.60 6.72 -2.39 -0.02 2.58 16 47 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 48 H 0.14 0.48 7.17 -2.39 -0.02 0.46 16 49 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.09 1.04 7.95 -2.39 -0.02 1.02 16 51 H 0.09 1.04 7.96 -2.39 -0.02 1.02 16 52 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 Total: -1.00 -77.40 402.46 4.10 -73.30 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.80 Total: 13.67 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 7.09 Total: 12.48 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.39 Total: -125.66 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.54 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.67 Total: 49.75 kcal Total: -77.40 4.10 -73.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005492120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.407 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds