Wall clock time and date at job start Wed Apr 1 2020 04:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47183 * 2 1 4 4 N 1.39937 * 125.75141 * 270.02575 * 3 2 1 5 5 C 1.30445 * 108.89104 * 179.72771 * 4 3 2 6 6 C 1.41287 * 108.02652 * 0.38607 * 5 4 3 7 7 C 1.47433 * 126.41681 * 179.87593 * 6 5 4 8 8 O 1.21598 * 120.00134 * 209.32832 * 7 6 5 9 9 N 1.34780 * 119.99650 * 29.33412 * 7 6 5 10 10 C 1.47065 * 120.84716 * 356.65112 * 9 7 6 11 11 C 1.53137 * 109.04426 * 126.60594 * 10 9 7 12 12 C 1.53145 * 109.61749 * 53.99738 * 11 10 9 13 13 C 1.52818 * 109.26350 * 299.14961 * 12 11 10 14 14 H 1.09005 * 109.47585 * 302.00420 * 13 12 11 15 15 C 1.53065 * 110.34416 * 181.46095 * 13 12 11 16 16 N 1.47070 * 108.37196 * 184.55102 * 15 13 12 17 17 C 1.36937 * 120.46880 * 233.32006 * 16 15 13 18 18 H 1.07999 * 119.99825 * 34.08314 * 17 16 15 19 19 C 1.38814 * 120.00021 * 214.08328 * 17 16 15 20 20 N 1.31619 * 119.99651 * 18.05793 * 19 17 16 21 21 Si 1.86799 * 120.00035 * 198.05314 * 19 17 16 22 22 H 1.48506 * 109.46917 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46741 * 120.00190 * 21 19 17 24 24 H 1.48491 * 109.47323 * 240.00302 * 21 19 17 25 25 C 1.46937 * 119.00651 * 53.30110 * 16 15 13 26 26 C 1.53317 * 109.12321 * 307.36263 * 25 16 15 27 27 C 1.46717 * 120.83992 * 176.68129 * 9 7 6 28 28 H 1.09003 * 109.52362 * 114.76885 * 27 9 7 29 29 C 1.34260 * 125.75219 * 89.99661 * 3 2 1 30 30 C 1.50696 * 126.29304 * 0.02562 * 29 3 2 31 31 H 1.09000 * 109.46861 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46967 * 300.00046 * 1 2 3 33 33 H 1.08997 * 109.47034 * 60.00108 * 1 2 3 34 34 H 1.09003 * 109.46967 * 239.99953 * 2 1 3 35 35 H 1.08997 * 109.47034 * 119.99892 * 2 1 3 36 36 H 1.08005 * 125.98625 * 180.26412 * 5 4 3 37 37 H 1.08998 * 109.53996 * 6.74313 * 10 9 7 38 38 H 1.08992 * 109.61601 * 246.51910 * 10 9 7 39 39 H 1.09000 * 109.44808 * 293.94915 * 11 10 9 40 40 H 1.08997 * 109.44301 * 174.03480 * 11 10 9 41 41 H 1.09000 * 109.50634 * 179.21939 * 12 11 10 42 42 H 1.08995 * 109.50907 * 59.08998 * 12 11 10 43 43 H 1.09007 * 109.68676 * 304.27790 * 15 13 12 44 44 H 1.08996 * 109.68993 * 64.81939 * 15 13 12 45 45 H 0.96998 * 119.99598 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.51578 * 187.47918 * 25 16 15 47 47 H 1.08994 * 109.53285 * 67.26630 * 25 16 15 48 48 H 1.09001 * 109.55609 * 294.28044 * 26 25 16 49 49 H 1.08994 * 109.55622 * 173.95511 * 26 25 16 50 50 H 1.09003 * 109.46747 * 270.01822 * 30 29 3 51 51 H 1.09002 * 109.47383 * 30.02043 * 30 29 3 52 52 H 1.08997 * 109.47216 * 150.02205 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2904 2.1523 -1.1357 5 6 2.7012 3.3311 -0.7573 6 6 2.7161 3.3564 0.6552 7 6 3.1166 4.4918 1.5061 8 8 3.5968 4.2887 2.6047 9 7 2.9504 5.7550 1.0664 10 6 2.4397 6.0213 -0.2869 11 6 1.2340 6.9604 -0.1901 12 6 1.6210 8.2143 0.5994 13 6 2.0453 7.8104 2.0108 14 1 1.2294 7.2749 2.4964 15 6 2.4032 9.0501 2.8341 16 7 2.9082 8.6077 4.1426 17 6 2.3598 9.0943 5.2992 18 1 1.3056 9.3254 5.3414 19 6 3.1587 9.2904 6.4173 20 7 4.4668 9.3571 6.2878 21 14 2.3773 9.4598 8.1055 22 1 0.9016 9.3490 7.9813 23 1 2.8811 8.3823 8.9945 24 1 2.7279 10.7822 8.6828 25 6 4.0092 7.6358 4.1900 26 6 3.6437 6.4205 3.3297 27 6 3.2749 6.8993 1.9253 28 1 4.1094 7.4528 1.4948 29 6 2.2798 2.1209 1.0896 30 6 2.1254 1.6827 2.5232 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.9826 4.1447 -1.4096 37 1 2.1353 5.0840 -0.7526 38 1 3.2198 6.4900 -0.8866 39 1 0.4160 6.4496 0.3179 40 1 0.9158 7.2466 -1.1925 41 1 0.7656 8.8876 0.6552 42 1 2.4491 8.7175 0.1003 43 1 3.1733 9.6238 2.3182 44 1 1.5159 9.6678 2.9726 45 1 5.0251 9.4945 7.0691 46 1 4.1702 7.3179 5.2201 47 1 4.9183 8.0960 3.8031 48 1 2.7937 5.9018 3.7733 49 1 4.4965 5.7442 3.2725 50 1 1.1190 1.9191 2.8689 51 1 2.2910 0.6077 2.5945 52 1 2.8543 2.2046 3.1431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021699219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:38 Heat of formation + Delta-G solvation = 84.180810 kcal Electronic energy + Delta-G solvation = -32306.869943 eV Core-core repulsion = 28309.392179 eV Total energy + Delta-G solvation = -3997.477764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.72832 -40.00410 -37.46092 -35.85440 -34.90075 -32.89266 -32.54025 -32.17681 -30.48297 -29.48561 -29.30835 -27.43666 -25.59112 -24.93529 -24.20660 -22.54941 -22.33318 -21.98961 -20.40273 -19.98921 -19.24447 -18.67483 -17.04872 -16.54131 -16.22225 -15.70602 -15.54114 -15.01987 -14.80536 -14.68638 -14.46583 -14.05240 -13.87910 -13.64171 -13.50204 -13.31430 -13.19001 -12.86138 -12.75001 -12.63024 -12.60653 -12.32602 -12.24043 -12.05373 -11.96281 -11.73624 -11.27103 -11.11214 -10.90798 -10.85053 -10.80210 -10.70304 -10.39888 -10.22629 -10.14354 -9.89422 -9.82018 -9.52986 -9.27802 -8.66453 -8.52824 -8.36564 -8.09031 -6.47670 -5.70075 -3.17273 1.47760 2.12021 2.13452 3.23752 3.42480 3.50209 3.52739 3.57558 4.14769 4.40016 4.52845 4.56210 4.60764 4.71698 4.87446 4.88550 5.00629 5.05735 5.13563 5.19302 5.22072 5.36904 5.38392 5.42248 5.47733 5.51453 5.57577 5.61533 5.72867 5.78757 5.79839 5.95779 5.98783 6.02563 6.14157 6.22144 6.27700 6.35557 6.48516 6.49914 6.63977 6.70632 6.81252 6.85195 7.04077 7.10005 7.29173 7.41632 7.54613 7.73092 7.84390 7.91119 8.57951 8.63197 9.31110 9.93446 10.54154 11.37250 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.003057 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.325303 B = 9156.013751 C =10159.342513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 N -0.362 5.362 4 N -0.301 5.301 5 C 0.068 3.932 6 C -0.288 4.288 7 C 0.592 3.408 8 O -0.531 6.531 9 N -0.601 5.601 10 C 0.084 3.916 11 C -0.131 4.131 12 C -0.114 4.114 13 C -0.113 4.113 14 H 0.069 0.931 15 C 0.156 3.844 16 N -0.591 5.591 17 C -0.257 4.257 18 H 0.060 0.940 19 C 0.009 3.991 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.170 3.830 26 C -0.126 4.126 27 C 0.161 3.839 28 H 0.063 0.937 29 C 0.151 3.849 30 C -0.104 4.104 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.199 0.801 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.252 0.748 46 H 0.073 0.927 47 H 0.016 0.984 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -16.765 -16.807 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.143 5.143 4 N -0.120 5.120 5 C -0.118 4.118 6 C -0.303 4.303 7 C 0.381 3.619 8 O -0.409 6.409 9 N -0.333 5.333 10 C -0.039 4.039 11 C -0.169 4.169 12 C -0.152 4.152 13 C -0.134 4.134 14 H 0.087 0.913 15 C 0.029 3.971 16 N -0.314 5.314 17 C -0.387 4.387 18 H 0.078 0.922 19 C -0.190 4.190 20 N -0.539 5.539 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.044 3.956 26 C -0.165 4.165 27 C 0.059 3.941 28 H 0.081 0.919 29 C 0.020 3.980 30 C -0.162 4.162 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.215 0.785 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.035 0.965 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.551 -17.744 -17.091 25.493 hybrid contribution -0.245 0.722 1.322 1.526 sum -6.796 -17.022 -15.770 24.179 Atomic orbital electron populations 1.22186 0.93972 1.03238 1.03466 1.21750 0.95477 0.77735 1.04676 1.48521 1.50212 1.12159 1.03360 1.77144 1.22913 1.04250 1.07728 1.24336 0.98053 0.95255 0.94182 1.20189 1.20058 0.96455 0.93614 1.17243 0.77863 0.81566 0.85239 1.90802 1.44576 1.84505 1.21003 1.48044 1.64605 1.05602 1.15086 1.22360 0.96333 1.00852 0.84356 1.21882 0.97765 0.96870 1.00424 1.21523 1.01075 0.96609 0.95975 1.22078 0.97592 0.98881 0.94862 0.91299 1.20875 0.97065 0.92087 0.87081 1.44075 1.40166 1.46912 1.00204 1.19110 0.91665 1.38988 0.88933 0.92205 1.25161 0.95356 0.99405 0.99112 1.70071 1.03134 1.52127 1.28530 0.86316 0.78923 0.77216 0.84851 1.20222 1.21528 1.21763 1.20891 0.89160 0.86741 0.98822 1.22666 1.02606 0.98813 0.92390 1.21287 0.96207 0.84939 0.91630 0.91854 1.21447 0.95096 0.90472 0.91017 1.20717 1.04986 1.01818 0.88682 0.90313 0.91813 0.91494 0.88437 0.88674 0.78483 0.88371 0.91570 0.91850 0.91310 0.91901 0.92041 0.96480 0.92712 0.93763 0.90838 0.96545 0.92184 0.90060 0.89815 0.91113 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.12 0.82 6.93 -4.04 -0.03 0.79 16 3 N -0.36 -3.85 3.58 -56.60 -0.20 -4.05 16 4 N -0.30 -3.62 12.50 30.86 0.39 -3.24 16 5 C 0.07 0.79 9.73 -16.98 -0.17 0.63 16 6 C -0.29 -3.95 5.72 -105.07 -0.60 -4.55 16 7 C 0.59 9.70 7.48 -12.51 -0.09 9.61 16 8 O -0.53 -10.24 10.88 5.28 0.06 -10.18 16 9 N -0.60 -9.23 2.97 -166.57 -0.49 -9.72 16 10 C 0.08 0.96 5.57 -3.66 -0.02 0.94 16 11 C -0.13 -1.48 6.07 -26.59 -0.16 -1.64 16 12 C -0.11 -1.53 5.24 -26.75 -0.14 -1.67 16 13 C -0.11 -2.00 2.21 -90.54 -0.20 -2.20 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.16 3.32 5.86 -3.70 -0.02 3.30 16 16 N -0.59 -15.28 2.96 -172.19 -0.51 -15.79 16 17 C -0.26 -7.26 9.49 -15.06 -0.14 -7.41 16 18 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 19 C 0.01 0.27 4.83 -17.43 -0.08 0.19 16 20 N -0.90 -26.81 11.75 55.49 0.65 -26.16 16 21 Si 0.90 22.21 29.59 -169.99 -5.03 17.18 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C 0.17 4.28 5.25 -3.64 -0.02 4.26 16 26 C -0.13 -2.69 3.81 -26.62 -0.10 -2.80 16 27 C 0.16 2.92 2.64 -67.73 -0.18 2.74 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 C 0.15 1.83 7.00 -81.60 -0.57 1.25 16 30 C -0.10 -1.06 9.87 36.00 0.36 -0.71 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.44 7.02 -51.93 -0.36 0.08 16 36 H 0.20 1.77 5.92 -52.48 -0.31 1.46 16 37 H 0.10 0.99 3.23 -51.93 -0.17 0.82 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 46 H 0.07 2.07 6.60 -51.93 -0.34 1.73 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.39 7.41 -51.93 -0.38 1.01 16 49 H 0.08 1.78 6.16 -51.93 -0.32 1.46 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.51 7.05 -51.93 -0.37 0.15 16 52 H 0.11 1.41 6.45 -51.93 -0.34 1.08 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -34.02 391.44 -9.51 -43.52 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.47 Total: 0.38 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.79 Total: 2.15 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.17 Total: -58.96 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.02 -9.51 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021699219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.706 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds