Wall clock time and date at job start Wed Apr 1 2020 04:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47678 * 2 1 4 4 C 1.34947 * 126.04081 * 124.99230 * 3 2 1 5 5 C 1.35312 * 107.74594 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.03640 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47170 * 90.00375 * 6 5 4 8 8 O 1.21286 * 119.99614 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.47096 * 120.94146 * 359.03020 * 9 7 6 11 11 C 1.53141 * 109.62839 * 233.61202 * 10 9 7 12 12 C 1.53124 * 109.48395 * 306.36951 * 11 10 9 13 13 C 1.52863 * 109.34013 * 60.64176 * 12 11 10 14 14 H 1.09001 * 108.60303 * 57.11120 * 13 12 11 15 15 C 1.51243 * 109.76005 * 176.02622 * 13 12 11 16 16 N 1.46898 * 109.35068 * 68.22263 * 15 13 12 17 17 C 1.36938 * 120.76693 * 232.94232 * 16 15 13 18 18 H 1.08006 * 119.99543 * 151.93193 * 17 16 15 19 19 C 1.38809 * 120.00243 * 331.93201 * 17 16 15 20 20 N 1.31613 * 120.00196 * 343.14561 * 19 17 16 21 21 Si 1.86802 * 119.99887 * 163.14802 * 19 17 16 22 22 H 1.48505 * 109.47103 * 89.99880 * 21 19 17 23 23 H 1.48503 * 109.47308 * 210.00014 * 21 19 17 24 24 H 1.48503 * 109.47211 * 329.99936 * 21 19 17 25 25 C 1.46968 * 118.45812 * 52.91976 * 16 15 13 26 26 C 1.53099 * 108.62393 * 305.70581 * 25 16 15 27 27 C 1.47313 * 120.84612 * 179.97438 * 9 7 6 28 28 H 1.08998 * 110.07887 * 4.90208 * 27 9 7 29 29 C 1.39866 * 107.92074 * 0.26895 * 5 4 3 30 30 N 1.30838 * 108.20261 * 359.55209 * 29 5 4 31 31 H 1.09001 * 109.47290 * 300.00266 * 1 2 3 32 32 H 1.08999 * 109.47107 * 59.99677 * 1 2 3 33 33 H 1.08996 * 109.47543 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47290 * 239.99734 * 2 1 3 35 35 H 1.09000 * 109.46893 * 119.99823 * 2 1 3 36 36 H 1.08003 * 126.12143 * 0.05318 * 4 3 2 37 37 H 1.08994 * 109.47001 * 330.00231 * 6 5 4 38 38 H 1.09004 * 109.47002 * 210.00159 * 6 5 4 39 39 H 1.09002 * 108.89335 * 113.78111 * 10 9 7 40 40 H 1.08995 * 109.66940 * 353.92409 * 10 9 7 41 41 H 1.08995 * 109.46865 * 186.36403 * 11 10 9 42 42 H 1.09002 * 109.46790 * 66.37093 * 11 10 9 43 43 H 1.08994 * 109.49066 * 300.68664 * 12 11 10 44 44 H 1.08999 * 109.51228 * 180.61549 * 12 11 10 45 45 H 1.08998 * 109.78112 * 308.05395 * 15 13 12 46 46 H 1.09004 * 109.14756 * 188.00558 * 15 13 12 47 47 H 0.97005 * 120.00040 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.60862 * 185.96469 * 25 16 15 49 49 H 1.09004 * 109.60948 * 65.44371 * 25 16 15 50 50 H 1.09008 * 109.45129 * 295.30483 * 26 25 16 51 51 H 1.08998 * 109.45503 * 175.37331 * 26 25 16 52 52 H 1.08005 * 125.89645 * 179.73228 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0714 3.2136 0.5463 6 6 3.9550 4.1998 1.2660 7 6 5.3464 4.1410 0.6903 8 8 5.5961 3.3734 -0.2150 9 7 6.3132 4.9412 1.1813 10 6 6.0281 5.8947 2.2646 11 6 6.4714 7.2989 1.8438 12 6 7.9368 7.2607 1.4012 13 6 8.0810 6.3150 0.2089 14 1 7.4169 6.6541 -0.5862 15 6 9.5057 6.3447 -0.2979 16 7 10.3910 5.7343 0.7028 17 6 11.4964 6.4010 1.1599 18 1 11.8736 6.2041 2.1526 19 6 12.1319 7.3299 0.3475 20 7 11.8989 7.3399 -0.9478 21 14 13.3180 8.5658 1.0926 22 1 14.6899 7.9971 1.0929 23 1 13.3002 9.8151 0.2900 24 1 12.9070 8.8675 2.4873 25 6 10.0627 4.3916 1.2023 26 6 8.6258 4.4044 1.7306 27 6 7.6798 4.8987 0.6329 28 1 7.7183 4.2266 -0.2243 29 6 2.3071 3.4743 -0.5957 30 7 1.6802 2.3749 -0.9276 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3193 1.4123 1.7357 37 1 3.9897 3.9500 2.3264 38 1 3.5529 5.2054 1.1425 39 1 6.5772 5.5908 3.1558 40 1 4.9594 5.8983 2.4782 41 1 6.3641 7.9815 2.6868 42 1 5.8508 7.6430 1.0164 43 1 8.5562 6.9050 2.2244 44 1 8.2559 8.2620 1.1120 45 1 9.8127 7.3754 -0.4753 46 1 9.5657 5.7814 -1.2292 47 1 12.3428 7.9892 -1.5155 48 1 10.7464 4.1238 2.0079 49 1 10.1478 3.6686 0.3911 50 1 8.5616 5.0694 2.5920 51 1 8.3398 3.3958 2.0290 52 1 2.2472 4.4191 -1.1156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021709506.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:58 Heat of formation + Delta-G solvation = 62.623944 kcal Electronic energy + Delta-G solvation = -31455.389460 eV Core-core repulsion = 27456.976920 eV Total energy + Delta-G solvation = -3998.412540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.35679 -40.15873 -37.97631 -35.47514 -34.81469 -32.77560 -32.54383 -31.80261 -30.36511 -30.19454 -29.41463 -27.09729 -25.54132 -24.64239 -23.94362 -22.46542 -21.96748 -21.37085 -20.87679 -20.42265 -18.88868 -17.79796 -17.12431 -16.98970 -16.56600 -15.68810 -15.34657 -15.18950 -15.02248 -14.50441 -14.37299 -14.21201 -13.93676 -13.59786 -13.53267 -13.22765 -13.18114 -12.94187 -12.64688 -12.58570 -12.48858 -12.39548 -12.25578 -12.16880 -11.81118 -11.67102 -11.49996 -11.09053 -10.90446 -10.71319 -10.62721 -10.59037 -10.41353 -10.08019 -10.05011 -9.93661 -9.63724 -9.51625 -9.48258 -9.35196 -8.47310 -8.42271 -8.16686 -6.64552 -5.77369 -3.19398 1.81753 2.36977 2.67633 2.91524 3.35973 3.39050 3.44864 3.46290 4.21382 4.50307 4.59265 4.67321 4.78984 4.82119 4.86407 4.98728 5.07562 5.13401 5.20667 5.26803 5.31582 5.36571 5.41165 5.48899 5.51196 5.53663 5.60519 5.65098 5.74769 5.78934 5.84935 5.94619 6.01180 6.11091 6.15005 6.27016 6.36503 6.47111 6.52819 6.57818 6.61154 6.72837 6.82065 6.90764 6.96766 7.03716 7.07468 7.35505 7.62403 7.64747 7.77449 7.81426 8.46028 8.50105 9.22498 9.86034 10.43938 11.31302 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.002268 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.914646 B =12340.835120 C =12626.088050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.067 3.933 5 C -0.217 4.217 6 C -0.059 4.059 7 C 0.511 3.489 8 O -0.538 6.538 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.135 4.135 12 C -0.105 4.105 13 C -0.113 4.113 14 H 0.055 0.945 15 C 0.177 3.823 16 N -0.588 5.588 17 C -0.249 4.249 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.899 3.101 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.147 3.853 26 C -0.139 4.139 27 C 0.156 3.844 28 H 0.091 0.909 29 C 0.062 3.938 30 N -0.297 5.297 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.169 0.831 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.017 0.983 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.019 0.981 50 H 0.064 0.936 51 H 0.048 0.952 52 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.740 -8.271 7.877 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.156 5.156 4 C -0.079 4.079 5 C -0.228 4.228 6 C -0.100 4.100 7 C 0.298 3.702 8 O -0.415 6.415 9 N -0.342 5.342 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.133 4.133 14 H 0.073 0.927 15 C 0.051 3.949 16 N -0.311 5.311 17 C -0.378 4.378 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.729 3.271 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.019 3.981 26 C -0.179 4.179 27 C 0.054 3.946 28 H 0.109 0.891 29 C -0.124 4.124 30 N -0.118 5.118 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.186 0.814 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.035 0.965 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.037 0.963 50 H 0.082 0.918 51 H 0.067 0.933 52 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -22.392 -9.306 6.440 25.089 hybrid contribution 1.296 1.118 0.906 1.936 sum -21.096 -8.188 7.346 23.792 Atomic orbital electron populations 1.22048 0.93886 1.02720 1.03533 1.21649 0.95904 0.77702 1.03753 1.48553 1.35896 1.10049 1.21143 1.22213 0.95046 0.94285 0.96385 1.19436 1.06877 0.94932 1.01588 1.19932 0.91120 0.99250 0.99687 1.20642 0.86351 0.80286 0.82892 1.90692 1.82344 1.38881 1.29590 1.48576 1.10676 1.38000 1.36902 1.21693 1.00425 0.89388 0.89944 1.21964 0.98699 0.95553 1.01124 1.21472 0.93880 0.99708 0.99170 1.21725 1.00841 0.93460 0.97321 0.92692 1.20407 0.84121 1.00536 0.89834 1.44025 1.26370 1.12499 1.48210 1.19118 1.04085 1.18148 0.96470 0.91783 1.25031 0.98183 1.01585 0.94804 1.70028 1.45421 1.36667 1.02513 0.86351 0.81065 0.81190 0.78478 1.21479 1.21632 1.20529 1.20864 0.92092 0.88392 0.96707 1.22368 0.97604 0.99434 0.98473 1.21243 0.78752 0.97875 0.96748 0.89061 1.23697 0.95606 0.97428 0.95653 1.77271 1.24569 0.96680 1.13315 0.92166 0.91090 0.90819 0.89852 0.88785 0.81360 0.88812 0.88442 0.91559 0.90499 0.91345 0.92143 0.90606 0.92130 0.89006 0.96521 0.93652 0.92581 0.96340 0.91755 0.93288 0.80379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 10.10 37.16 0.38 -0.64 16 2 C 0.13 0.94 7.23 -4.04 -0.03 0.91 16 3 N -0.37 -4.15 3.68 -61.37 -0.23 -4.37 16 4 C 0.07 0.72 11.36 -17.22 -0.20 0.53 16 5 C -0.22 -2.56 4.59 -105.05 -0.48 -3.04 16 6 C -0.06 -0.61 4.55 -29.03 -0.13 -0.74 16 7 C 0.51 7.56 7.70 -10.99 -0.08 7.47 16 8 O -0.54 -10.37 15.49 5.55 0.09 -10.29 16 9 N -0.61 -8.82 2.69 -164.77 -0.44 -9.27 16 10 C 0.11 1.22 5.85 -3.64 -0.02 1.20 16 11 C -0.14 -1.67 6.09 -26.59 -0.16 -1.83 16 12 C -0.10 -1.75 4.82 -26.74 -0.13 -1.88 16 13 C -0.11 -2.12 2.39 -91.48 -0.22 -2.33 16 14 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.18 4.16 4.61 -4.71 -0.02 4.14 16 16 N -0.59 -14.27 2.64 -173.53 -0.46 -14.73 16 17 C -0.25 -6.61 9.60 -15.06 -0.14 -6.75 16 18 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.90 11.20 55.49 0.62 -25.28 16 21 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.15 3.06 6.51 -3.74 -0.02 3.04 16 26 C -0.14 -2.43 5.05 -26.62 -0.13 -2.56 16 27 C 0.16 2.77 2.63 -67.33 -0.18 2.59 16 28 H 0.09 1.88 7.06 -51.93 -0.37 1.51 16 29 C 0.06 0.78 11.96 -17.37 -0.21 0.57 16 30 N -0.30 -3.96 12.42 30.63 0.38 -3.58 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.17 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.09 0.75 7.99 -51.93 -0.41 0.33 16 38 H 0.10 0.82 7.68 -51.93 -0.40 0.43 16 39 H 0.07 0.74 7.30 -51.93 -0.38 0.36 16 40 H 0.08 0.63 5.99 -51.93 -0.31 0.32 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.39 6.18 -51.93 -0.32 1.06 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 2.40 6.05 -51.93 -0.31 2.08 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.06 1.14 7.94 -51.93 -0.41 0.72 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 1.10 5.42 -51.92 -0.28 0.82 16 51 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.18 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -33.72 400.54 -9.57 -43.29 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.66 Total: 1.22 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.88 Total: 0.67 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.12 Total: -57.22 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.72 -9.57 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021709506.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.913 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds