Wall clock time and date at job start Wed Apr 1 2020 04:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47090 * 2 1 4 4 N 1.28436 * 125.19053 * 264.79069 * 3 2 1 5 5 C 1.30869 * 110.92929 * 180.27999 * 4 3 2 6 6 C 1.50693 * 126.06891 * 179.67630 * 5 4 3 7 7 C 1.53005 * 117.49714 * 163.79234 * 6 5 4 8 8 C 1.53008 * 117.49693 * 95.13566 * 6 5 4 9 9 C 1.39675 * 107.85858 * 359.71921 * 5 4 3 10 10 C 1.36602 * 125.18772 * 84.57901 * 3 2 1 11 11 C 1.47157 * 126.88801 * 0.02562 * 10 3 2 12 12 O 1.21633 * 120.00065 * 4.33246 * 11 10 3 13 13 N 1.34780 * 120.00196 * 184.33682 * 11 10 3 14 14 C 1.46494 * 120.00021 * 174.74602 * 13 11 10 15 15 C 1.53001 * 109.47295 * 205.00203 * 14 13 11 16 16 C 1.53002 * 109.46845 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47311 * 60.00549 * 16 15 14 18 18 N 1.46495 * 109.47234 * 179.97438 * 17 16 15 19 19 C 1.36939 * 120.00124 * 204.99776 * 18 17 16 20 20 H 1.07995 * 119.99809 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99865 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00080 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46695 * 90.00498 * 23 21 19 25 25 H 1.48493 * 109.47330 * 210.00108 * 23 21 19 26 26 H 1.48496 * 109.47372 * 330.00803 * 23 21 19 27 27 C 1.53001 * 109.46718 * 299.99528 * 17 16 15 28 28 C 1.52997 * 109.47099 * 59.99980 * 27 17 16 29 29 H 1.09003 * 109.46988 * 300.00244 * 1 2 3 30 30 H 1.09000 * 109.47154 * 60.00046 * 1 2 3 31 31 H 1.08997 * 109.47232 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47084 * 239.99648 * 2 1 3 33 33 H 1.09005 * 109.46966 * 119.99540 * 2 1 3 34 34 H 1.08991 * 115.55853 * 309.45894 * 6 5 4 35 35 H 1.09003 * 117.49744 * 0.02562 * 7 6 5 36 36 H 1.08995 * 117.50452 * 145.02236 * 7 6 5 37 37 H 1.08998 * 117.49754 * 214.97441 * 8 6 5 38 38 H 1.08996 * 117.49612 * 359.97368 * 8 6 5 39 39 H 1.07998 * 127.31945 * 180.02562 * 9 5 4 40 40 H 0.97001 * 119.99984 * 354.75583 * 13 11 10 41 41 H 1.09005 * 109.47852 * 325.00668 * 14 13 11 42 42 H 1.08998 * 109.46684 * 60.00633 * 15 14 13 43 43 H 1.09001 * 109.47057 * 300.00021 * 15 14 13 44 44 H 1.09005 * 109.46728 * 180.02562 * 16 15 14 45 45 H 1.08996 * 109.47721 * 299.99998 * 16 15 14 46 46 H 1.08996 * 109.47178 * 59.99117 * 17 16 15 47 47 H 0.97006 * 119.99894 * 24.99813 * 18 17 16 48 48 H 0.96996 * 120.00313 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.46932 * 180.02562 * 27 17 16 50 50 H 1.09001 * 109.47057 * 300.00456 * 27 17 16 51 51 H 1.09000 * 109.47263 * 60.00511 * 28 27 17 52 52 H 1.09005 * 109.46982 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3549 2.0473 -1.0453 5 6 2.7557 3.2509 -0.7237 6 6 3.2329 4.3124 -1.6809 7 6 3.2949 5.7518 -1.1658 8 6 2.2082 5.3414 -2.1628 9 6 2.6635 3.3765 0.6643 10 6 2.1813 2.1585 1.1114 11 6 1.9061 1.7755 2.5053 12 8 1.5630 0.6383 2.7671 13 7 2.0342 2.6847 3.4920 14 6 1.6504 2.3374 4.8624 15 6 1.2914 3.6114 5.6299 16 6 0.8912 3.2487 7.0615 17 6 2.0605 2.5474 7.7558 18 7 1.6775 2.2006 9.1266 19 6 2.6399 2.0491 10.0889 20 1 3.6813 2.1849 9.8372 21 6 2.2770 1.7200 11.3877 22 7 3.2020 1.5739 12.3125 23 14 0.4757 1.4845 11.8230 24 1 0.0999 0.0618 11.6221 25 1 0.2566 1.8584 13.2433 26 1 -0.3614 2.3456 10.9496 27 6 2.4194 1.2734 6.9883 28 6 2.8195 1.6361 5.5568 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.0005 3.9975 -2.3877 35 1 2.9909 5.9308 -0.1345 36 1 4.1029 6.3839 -1.5341 37 1 2.3019 5.7036 -3.1866 38 1 1.1889 5.2502 -1.7878 39 1 2.9145 4.2405 1.2617 40 1 2.3803 3.5691 3.2946 41 1 0.7879 1.6712 4.8406 42 1 0.4587 4.1112 5.1351 43 1 2.1539 4.2775 5.6519 44 1 0.6351 4.1563 7.6081 45 1 0.0289 2.5824 7.0400 46 1 2.9228 3.2137 7.7773 47 1 0.7421 2.0783 9.3526 48 1 2.9485 1.3443 13.2202 49 1 3.2520 0.7736 7.4831 50 1 1.5570 0.6071 6.9667 51 1 3.6819 2.3023 5.5783 52 1 3.0757 0.7285 5.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026512030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:07 Heat of formation + Delta-G solvation = 42.799102 kcal Electronic energy + Delta-G solvation = -30335.113359 eV Core-core repulsion = 26335.841149 eV Total energy + Delta-G solvation = -3999.272210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.65511 -40.94683 -39.27575 -38.11300 -36.53975 -35.31498 -34.62081 -33.08950 -31.86721 -31.68647 -30.67198 -29.16294 -25.73686 -25.38228 -24.55610 -23.70655 -23.29293 -23.11003 -22.18077 -21.45947 -21.21056 -20.34766 -19.53190 -18.79915 -17.48290 -17.16306 -17.00616 -16.77999 -16.44755 -16.08217 -15.81854 -15.59730 -15.21617 -15.17315 -15.04333 -14.94183 -14.61819 -14.35238 -14.27177 -13.66485 -13.65366 -13.38701 -13.13016 -13.10050 -12.91212 -12.86727 -12.47581 -12.35438 -12.28301 -12.25497 -12.06355 -12.02840 -11.94118 -11.78309 -11.51441 -11.49239 -11.22633 -11.15604 -11.12329 -10.86354 -10.31753 -9.99650 -9.80816 -9.28174 -8.00406 -5.33065 0.18051 1.29954 1.38387 1.41938 1.45667 1.49181 2.09859 2.11091 2.50039 2.95634 3.30787 3.34531 3.49513 3.63124 3.75540 3.81683 3.86278 3.96193 4.01525 4.10303 4.22529 4.24845 4.26911 4.32388 4.34576 4.36413 4.43991 4.52281 4.59681 4.62793 4.64355 4.70182 4.83206 4.87418 4.88927 4.95194 5.05222 5.09026 5.10809 5.15673 5.24924 5.26144 5.27973 5.34552 5.40869 5.47457 5.51915 5.61497 5.70771 5.80563 6.24376 6.40730 7.00936 7.09538 7.10827 7.88286 8.06538 9.21232 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.002054 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.073996 B =13627.130776 C =14447.372495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.261 5.261 4 N -0.293 5.293 5 C 0.046 3.954 6 C -0.093 4.093 7 C -0.150 4.150 8 C -0.167 4.167 9 C -0.173 4.173 10 C -0.052 4.052 11 C 0.590 3.410 12 O -0.567 6.567 13 N -0.693 5.693 14 C 0.157 3.843 15 C -0.107 4.107 16 C -0.116 4.116 17 C 0.174 3.826 18 N -0.753 5.753 19 C -0.224 4.224 20 H 0.056 0.944 21 C -0.069 4.069 22 N -0.986 5.986 23 Si 0.955 3.045 24 H -0.283 1.283 25 H -0.297 1.297 26 H -0.247 1.247 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.189 0.811 40 H 0.417 0.583 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.365 0.635 48 H 0.256 0.744 49 H 0.035 0.965 50 H 0.050 0.950 51 H 0.071 0.929 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 8.112 -33.176 34.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 N -0.049 5.049 4 N -0.126 5.126 5 C -0.110 4.110 6 C -0.112 4.112 7 C -0.188 4.188 8 C -0.205 4.205 9 C -0.202 4.202 10 C -0.180 4.180 11 C 0.376 3.624 12 O -0.447 6.447 13 N -0.344 5.344 14 C 0.053 3.947 15 C -0.146 4.146 16 C -0.155 4.155 17 C 0.066 3.934 18 N -0.396 5.396 19 C -0.356 4.356 20 H 0.074 0.926 21 C -0.260 4.260 22 N -0.637 5.637 23 Si 0.782 3.218 24 H -0.210 1.210 25 H -0.224 1.224 26 H -0.172 1.172 27 C -0.165 4.165 28 C -0.154 4.154 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.206 0.794 40 H 0.255 0.745 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.198 0.802 48 H 0.065 0.935 49 H 0.054 0.946 50 H 0.069 0.931 51 H 0.090 0.910 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.236 6.434 -33.787 34.790 hybrid contribution -0.305 -0.072 1.594 1.624 sum -5.541 6.362 -32.193 33.280 Atomic orbital electron populations 1.22012 0.92737 1.04542 1.01896 1.22273 0.96725 0.76012 1.05933 1.45990 1.44352 1.12667 1.01875 1.73071 1.17863 1.07583 1.14067 1.21453 1.03475 0.92500 0.93550 1.20134 1.03174 0.87520 1.00415 1.23146 1.01434 0.93921 1.00272 1.23049 0.95183 1.01498 1.00759 1.22406 1.05397 0.97524 0.94857 1.21485 1.12519 0.94268 0.89717 1.17064 0.77044 0.84836 0.83502 1.90797 1.49155 1.20376 1.84325 1.45603 1.65171 1.16583 1.07038 1.20952 0.96876 0.97595 0.79280 1.21675 1.03481 0.95716 0.93705 1.21690 0.97505 1.00836 0.95440 1.20492 0.96760 0.93735 0.82378 1.42840 1.04756 1.85492 1.06507 1.19032 0.89490 1.37682 0.89348 0.92636 1.25522 1.01771 1.02753 0.95984 1.69887 1.33937 1.57207 1.02657 0.85407 0.81015 0.78286 0.77074 1.20996 1.22430 1.17173 1.22004 1.00300 0.99440 0.94736 1.21774 0.98599 1.00315 0.94664 0.93460 0.91999 0.88147 0.86792 0.87811 0.86254 0.87559 0.86447 0.87069 0.89556 0.79364 0.74473 0.90682 0.88759 0.89442 0.90687 0.91766 0.93522 0.80243 0.93508 0.94582 0.93105 0.90988 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.24 71.98 0.74 -1.74 16 2 C 0.11 1.99 6.40 86.38 0.55 2.55 16 3 N -0.26 -5.66 3.35 -334.69 -1.12 -6.78 16 4 N -0.29 -6.50 11.90 -47.49 -0.57 -7.06 16 5 C 0.05 0.84 6.85 43.05 0.30 1.14 16 6 C -0.09 -1.19 6.33 -11.54 -0.07 -1.27 16 7 C -0.15 -1.17 10.03 30.62 0.31 -0.86 16 8 C -0.17 -1.68 10.24 30.62 0.31 -1.36 16 9 C -0.17 -2.79 9.79 22.66 0.22 -2.57 16 10 C -0.05 -1.07 6.96 40.79 0.28 -0.79 16 11 C 0.59 13.32 7.75 86.58 0.67 13.99 16 12 O -0.57 -16.39 14.34 -4.14 -0.06 -16.45 16 13 N -0.69 -12.09 5.06 -446.05 -2.26 -14.35 16 14 C 0.16 3.34 2.42 44.99 0.11 3.45 16 15 C -0.11 -1.91 5.39 30.60 0.16 -1.75 16 16 C -0.12 -2.96 5.39 30.60 0.16 -2.80 16 17 C 0.17 6.15 2.77 44.99 0.12 6.27 16 18 N -0.75 -34.33 4.93 -322.94 -1.59 -35.92 16 19 C -0.22 -12.71 10.41 84.03 0.87 -11.84 16 20 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 21 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 22 N -0.99 -63.65 13.97 21.65 0.30 -63.34 16 23 Si 0.95 45.61 27.74 68.60 1.90 47.51 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 27 C -0.12 -4.23 5.50 30.59 0.17 -4.06 16 28 C -0.11 -3.04 5.49 30.59 0.17 -2.87 16 29 H 0.05 0.95 8.03 -2.39 -0.02 0.93 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 2.13 6.54 -2.38 -0.02 2.11 16 34 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.11 0.68 7.22 -2.39 -0.02 0.66 16 36 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.19 1.65 7.01 -2.91 -0.02 1.63 16 40 H 0.42 4.55 7.63 -92.71 -0.71 3.84 16 41 H 0.08 1.88 7.66 -2.38 -0.02 1.86 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 47 H 0.36 15.94 5.66 -92.70 -0.52 15.41 16 48 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 49 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.05 1.46 8.09 -2.38 -0.02 1.44 16 Total: -1.00 -76.03 415.73 1.79 -74.23 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.37 Total: 30.29 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 5.55 Total: -8.14 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.23 Total: -127.45 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.06 Total: -16.45 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -76.03 1.79 -74.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026512030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.033 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds