Wall clock time and date at job start Wed Apr 1 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47067 * 2 1 4 4 N 1.39934 * 125.75361 * 270.02415 * 3 2 1 5 5 C 1.30454 * 108.89586 * 179.73214 * 4 3 2 6 6 C 1.41288 * 108.02315 * 0.38689 * 5 4 3 7 7 C 1.47425 * 126.41349 * 179.87742 * 6 5 4 8 8 O 1.21610 * 119.99801 * 174.27832 * 7 6 5 9 9 N 1.34770 * 120.00384 * 354.28211 * 7 6 5 10 10 C 1.46503 * 120.00318 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47190 * 154.99928 * 10 9 7 12 12 C 1.52999 * 109.47215 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47264 * 300.00043 * 12 11 10 14 14 N 1.46503 * 109.47289 * 299.99806 * 13 12 11 15 15 C 1.36937 * 120.00255 * 204.99637 * 14 13 12 16 16 H 1.08000 * 119.99583 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99829 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00089 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46961 * 60.00108 * 19 17 15 21 21 H 1.48505 * 109.47100 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47121 * 300.00042 * 19 17 15 23 23 C 1.53005 * 109.46986 * 59.99653 * 13 12 11 24 24 C 1.53001 * 109.46738 * 274.99792 * 10 9 7 25 25 C 1.34258 * 125.75518 * 90.00240 * 3 2 1 26 26 C 1.50700 * 126.28884 * 0.04180 * 25 3 2 27 27 C 1.53000 * 117.50135 * 129.94849 * 26 25 3 28 28 C 1.53000 * 117.50058 * 61.28587 * 26 25 3 29 29 H 1.09007 * 109.47422 * 59.99941 * 1 2 3 30 30 H 1.09006 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47216 * 300.00188 * 1 2 3 32 32 H 1.09004 * 109.46524 * 239.99913 * 2 1 3 33 33 H 1.08998 * 109.46993 * 120.00441 * 2 1 3 34 34 H 1.07998 * 125.98618 * 180.25878 * 5 4 3 35 35 H 0.97006 * 120.00045 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.46790 * 34.99656 * 10 9 7 37 37 H 1.09000 * 109.46989 * 59.99940 * 11 10 9 38 38 H 1.08998 * 109.47140 * 300.00456 * 11 10 9 39 39 H 1.09000 * 109.47127 * 60.00103 * 12 11 10 40 40 H 1.08997 * 109.47311 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.47586 * 179.97438 * 13 12 11 42 42 H 0.97003 * 119.99751 * 24.99938 * 14 13 12 43 43 H 0.97003 * 119.99831 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46855 * 60.00277 * 23 13 12 45 45 H 1.09002 * 109.46817 * 180.02562 * 23 13 12 46 46 H 1.09001 * 109.47507 * 60.00293 * 24 10 9 47 47 H 1.09000 * 109.47368 * 299.99510 * 24 10 9 48 48 H 1.08997 * 115.54654 * 275.61243 * 26 25 3 49 49 H 1.09003 * 117.49530 * 359.97438 * 27 26 25 50 50 H 1.08990 * 117.50335 * 145.01825 * 27 26 25 51 51 H 1.08999 * 117.49588 * 214.97862 * 28 26 25 52 52 H 1.09000 * 117.49552 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2904 2.1522 -1.1356 5 6 2.7012 3.3311 -0.7573 6 6 2.7162 3.3564 0.6553 7 6 3.1167 4.4918 1.5061 8 8 2.9865 4.4226 2.7132 9 7 3.6270 5.6064 0.9461 10 6 4.0244 6.7349 1.7916 11 6 5.0909 7.5616 1.0704 12 6 5.5055 8.7406 1.9531 13 6 4.2854 9.6187 2.2374 14 7 3.7411 10.1224 0.9740 15 6 3.0158 11.2838 0.9554 16 1 2.8454 11.8286 1.8723 17 6 2.5006 11.7613 -0.2418 18 7 2.7087 11.0975 -1.3591 19 14 1.5118 13.3459 -0.2671 20 1 2.3537 14.4628 0.2319 21 1 1.0781 13.6366 -1.6574 22 1 0.3180 13.1985 0.6038 23 6 3.2189 8.7919 2.9586 24 6 2.8044 7.6132 2.0764 25 6 2.2798 2.1208 1.0895 26 6 2.1258 1.6824 2.5231 27 6 3.3107 1.9124 3.4634 28 6 2.9696 0.4960 2.9936 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9827 4.1445 -1.4096 35 1 3.7304 5.6618 -0.0168 36 1 4.4295 6.3598 2.7314 37 1 4.6858 7.9367 0.1306 38 1 5.9599 6.9359 0.8674 39 1 5.9105 8.3658 2.8931 40 1 6.2649 9.3298 1.4392 41 1 4.5806 10.4584 2.8666 42 1 3.8945 9.6332 0.1505 43 1 2.3484 11.4310 -2.1957 44 1 3.6238 8.4172 3.8986 45 1 2.3494 9.4175 3.1607 46 1 2.0446 7.0243 2.5902 47 1 2.3994 7.9884 1.1365 48 1 1.1244 1.7851 2.9411 49 1 4.2018 2.3804 3.0449 50 1 3.0889 2.1659 4.4999 51 1 2.5233 -0.1816 3.7215 52 1 3.6357 0.0322 2.2661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026589063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:52 Heat of formation + Delta-G solvation = 63.470111 kcal Electronic energy + Delta-G solvation = -31090.494565 eV Core-core repulsion = 27092.118718 eV Total energy + Delta-G solvation = -3998.375847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71280 -39.42075 -37.78629 -37.18982 -34.76193 -34.44372 -32.72446 -30.61625 -30.43531 -30.18404 -29.55513 -27.50792 -24.74186 -23.59473 -23.42959 -22.72881 -22.36808 -22.03610 -21.29517 -20.05455 -19.49290 -18.48414 -17.55702 -17.16752 -16.36976 -16.10362 -15.67526 -15.07520 -14.92877 -14.74524 -14.59899 -14.35288 -14.28093 -13.76478 -13.70877 -13.56670 -13.37983 -12.90139 -12.70747 -12.48181 -12.30166 -12.08575 -11.89378 -11.82680 -11.67670 -11.64304 -11.56117 -11.37380 -10.87187 -10.79677 -10.75521 -10.61239 -10.39803 -10.24899 -10.13681 -9.95758 -9.67953 -9.60494 -9.45587 -9.42292 -8.85437 -8.78455 -8.48954 -6.87964 -5.72078 -2.98770 1.39622 2.07829 2.12352 3.46603 3.47065 3.51742 3.52243 3.54617 3.61637 4.10061 4.18164 4.54328 4.59625 4.64386 4.69099 4.71669 4.78583 4.94690 5.08165 5.15600 5.21464 5.24507 5.31111 5.32587 5.42577 5.52782 5.62716 5.64617 5.65209 5.73265 5.81531 5.86919 5.88404 5.94786 6.00454 6.07087 6.13424 6.19581 6.28482 6.31820 6.43223 6.59167 6.64804 6.75947 6.78750 6.87376 7.00899 7.13966 7.18152 7.40780 7.75466 7.86234 8.47874 8.56572 9.58920 10.18200 10.53093 11.50869 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002482 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.323712 B =11277.629334 C =12237.181480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.356 5.356 4 N -0.297 5.297 5 C 0.082 3.918 6 C -0.286 4.286 7 C 0.592 3.408 8 O -0.543 6.543 9 N -0.720 5.720 10 C 0.154 3.846 11 C -0.123 4.123 12 C -0.117 4.117 13 C 0.171 3.829 14 N -0.720 5.720 15 C -0.233 4.233 16 H 0.068 0.932 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.129 4.129 24 C -0.117 4.117 25 C 0.182 3.818 26 C -0.103 4.103 27 C -0.112 4.112 28 C -0.189 4.189 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.191 0.809 35 H 0.396 0.604 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.076 0.924 48 H 0.125 0.875 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.101 0.899 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -25.233 5.642 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.135 5.135 4 N -0.116 5.116 5 C -0.106 4.106 6 C -0.300 4.300 7 C 0.379 3.621 8 O -0.421 6.421 9 N -0.369 5.369 10 C 0.050 3.950 11 C -0.161 4.161 12 C -0.156 4.156 13 C 0.061 3.939 14 N -0.362 5.362 15 C -0.365 4.365 16 H 0.086 0.914 17 C -0.211 4.211 18 N -0.584 5.584 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.170 4.170 24 C -0.156 4.156 25 C 0.050 3.950 26 C -0.122 4.122 27 C -0.149 4.149 28 C -0.226 4.226 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.208 0.792 35 H 0.230 0.770 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.143 0.857 49 H 0.116 0.884 50 H 0.121 0.879 51 H 0.119 0.881 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.904 -26.016 5.485 26.604 hybrid contribution -0.566 1.367 -0.412 1.535 sum 0.338 -24.650 5.073 25.169 Atomic orbital electron populations 1.22177 0.93932 1.03218 1.03500 1.21796 0.95603 0.77611 1.04677 1.48538 1.49653 1.12186 1.03167 1.77194 1.22620 1.04495 1.07293 1.24084 0.96989 0.95524 0.93975 1.20083 1.20121 0.96397 0.93443 1.17142 0.76768 0.81253 0.86963 1.90746 1.55377 1.81895 1.14099 1.45921 1.64841 1.15514 1.10672 1.20989 0.95253 0.84959 0.93756 1.21737 0.97413 0.96698 1.00285 1.21716 0.98826 0.96137 0.98915 1.20255 0.90689 0.93565 0.89362 1.42456 1.62974 1.26833 1.03948 1.19214 1.24671 0.99122 0.93454 0.91373 1.24687 1.01718 0.99073 0.95589 1.69637 1.50617 1.40205 0.97958 0.86312 0.80113 0.83646 0.76390 1.21411 1.21832 1.21420 1.22086 1.00910 0.96892 0.97156 1.21726 0.96531 0.95738 1.01614 1.20525 0.94819 0.90580 0.89064 1.20404 0.98921 1.04332 0.88587 1.22760 0.97782 0.95226 0.99158 1.23215 1.03219 0.92245 1.03906 0.91461 0.90309 0.91817 0.88515 0.88495 0.79244 0.77000 0.90183 0.90535 0.92455 0.92375 0.91598 0.93488 0.78190 0.93620 0.93762 0.92094 0.93152 0.90526 0.85726 0.88382 0.87888 0.88054 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.12 0.85 6.93 -4.05 -0.03 0.83 16 3 N -0.36 -3.83 3.58 -56.61 -0.20 -4.03 16 4 N -0.30 -3.73 12.50 30.86 0.39 -3.35 16 5 C 0.08 0.99 11.50 -16.98 -0.20 0.79 16 6 C -0.29 -3.78 6.10 -105.07 -0.64 -4.42 16 7 C 0.59 8.77 7.62 -12.52 -0.10 8.67 16 8 O -0.54 -9.14 13.16 5.27 0.07 -9.07 16 9 N -0.72 -10.05 5.07 -54.88 -0.28 -10.33 16 10 C 0.15 2.37 2.46 -67.93 -0.17 2.21 16 11 C -0.12 -1.85 5.22 -26.73 -0.14 -1.99 16 12 C -0.12 -1.87 5.61 -26.73 -0.15 -2.02 16 13 C 0.17 3.33 3.10 -67.93 -0.21 3.12 16 14 N -0.72 -17.31 4.28 -53.42 -0.23 -17.54 16 15 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.94 -27.75 13.06 55.49 0.72 -27.03 16 19 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 C -0.13 -2.37 5.61 -26.75 -0.15 -2.52 16 24 C -0.12 -2.11 5.33 -26.76 -0.14 -2.26 16 25 C 0.18 2.15 6.44 -81.60 -0.53 1.62 16 26 C -0.10 -1.02 5.19 -91.77 -0.48 -1.49 16 27 C -0.11 -1.12 8.00 -26.69 -0.21 -1.34 16 28 C -0.19 -1.39 9.00 -26.69 -0.24 -1.63 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.49 6.46 -51.93 -0.34 0.16 16 34 H 0.19 1.80 7.53 -52.49 -0.40 1.40 16 35 H 0.40 4.80 7.59 -40.82 -0.31 4.49 16 36 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 37 H 0.08 1.30 6.50 -51.93 -0.34 0.96 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 42 H 0.38 9.66 6.06 -40.82 -0.25 9.41 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.08 1.60 7.60 -51.93 -0.39 1.20 16 48 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.10 1.17 7.53 -51.93 -0.39 0.78 16 50 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.09 0.65 7.98 -51.93 -0.41 0.24 16 LS Contribution 411.19 15.07 6.20 6.20 Total: -1.00 -32.74 411.19 -10.28 -43.02 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -8.68 Total: 12.84 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.24 Total: -8.13 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.40 Total: -62.28 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.74 -10.28 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026589063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.489 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds