Wall clock time and date at job start Wed Apr 1 2020 04:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47067 * 2 1 4 4 N 1.39934 * 125.75361 * 270.02415 * 3 2 1 5 5 C 1.30454 * 108.89586 * 179.73214 * 4 3 2 6 6 C 1.41288 * 108.02315 * 0.38689 * 5 4 3 7 7 C 1.47425 * 126.41349 * 179.87742 * 6 5 4 8 8 O 1.21610 * 119.99801 * 174.27832 * 7 6 5 9 9 N 1.34770 * 120.00384 * 354.28211 * 7 6 5 10 10 C 1.46503 * 120.00318 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47190 * 154.99928 * 10 9 7 12 12 C 1.52999 * 109.47215 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47264 * 300.00043 * 12 11 10 14 14 N 1.46503 * 109.47289 * 299.99806 * 13 12 11 15 15 C 1.36937 * 120.00255 * 204.99637 * 14 13 12 16 16 H 1.08000 * 119.99583 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99829 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00089 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46961 * 60.00108 * 19 17 15 21 21 H 1.48505 * 109.47100 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47121 * 300.00042 * 19 17 15 23 23 C 1.53005 * 109.46986 * 59.99653 * 13 12 11 24 24 C 1.53001 * 109.46738 * 274.99792 * 10 9 7 25 25 C 1.34258 * 125.75518 * 90.00240 * 3 2 1 26 26 C 1.50700 * 126.28884 * 0.04180 * 25 3 2 27 27 C 1.53000 * 117.50135 * 129.94849 * 26 25 3 28 28 C 1.53000 * 117.50058 * 61.28587 * 26 25 3 29 29 H 1.09007 * 109.47422 * 59.99941 * 1 2 3 30 30 H 1.09006 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47216 * 300.00188 * 1 2 3 32 32 H 1.09004 * 109.46524 * 239.99913 * 2 1 3 33 33 H 1.08998 * 109.46993 * 120.00441 * 2 1 3 34 34 H 1.07998 * 125.98618 * 180.25878 * 5 4 3 35 35 H 0.97006 * 120.00045 * 0.02562 * 9 7 6 36 36 H 1.09000 * 109.46790 * 34.99656 * 10 9 7 37 37 H 1.09000 * 109.46989 * 59.99940 * 11 10 9 38 38 H 1.08998 * 109.47140 * 300.00456 * 11 10 9 39 39 H 1.09000 * 109.47127 * 60.00103 * 12 11 10 40 40 H 1.08997 * 109.47311 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.47586 * 179.97438 * 13 12 11 42 42 H 0.97003 * 119.99751 * 24.99938 * 14 13 12 43 43 H 0.97003 * 119.99831 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46855 * 60.00277 * 23 13 12 45 45 H 1.09002 * 109.46817 * 180.02562 * 23 13 12 46 46 H 1.09001 * 109.47507 * 60.00293 * 24 10 9 47 47 H 1.09000 * 109.47368 * 299.99510 * 24 10 9 48 48 H 1.08997 * 115.54654 * 275.61243 * 26 25 3 49 49 H 1.09003 * 117.49530 * 359.97438 * 27 26 25 50 50 H 1.08990 * 117.50335 * 145.01825 * 27 26 25 51 51 H 1.08999 * 117.49588 * 214.97862 * 28 26 25 52 52 H 1.09000 * 117.49552 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2904 2.1522 -1.1356 5 6 2.7012 3.3311 -0.7573 6 6 2.7162 3.3564 0.6553 7 6 3.1167 4.4918 1.5061 8 8 2.9865 4.4226 2.7132 9 7 3.6270 5.6064 0.9461 10 6 4.0244 6.7349 1.7916 11 6 5.0909 7.5616 1.0704 12 6 5.5055 8.7406 1.9531 13 6 4.2854 9.6187 2.2374 14 7 3.7411 10.1224 0.9740 15 6 3.0158 11.2838 0.9554 16 1 2.8454 11.8286 1.8723 17 6 2.5006 11.7613 -0.2418 18 7 2.7087 11.0975 -1.3591 19 14 1.5118 13.3459 -0.2671 20 1 2.3537 14.4628 0.2319 21 1 1.0781 13.6366 -1.6574 22 1 0.3180 13.1985 0.6038 23 6 3.2189 8.7919 2.9586 24 6 2.8044 7.6132 2.0764 25 6 2.2798 2.1208 1.0895 26 6 2.1258 1.6824 2.5231 27 6 3.3107 1.9124 3.4634 28 6 2.9696 0.4960 2.9936 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9827 4.1445 -1.4096 35 1 3.7304 5.6618 -0.0168 36 1 4.4295 6.3598 2.7314 37 1 4.6858 7.9367 0.1306 38 1 5.9599 6.9359 0.8674 39 1 5.9105 8.3658 2.8931 40 1 6.2649 9.3298 1.4392 41 1 4.5806 10.4584 2.8666 42 1 3.8945 9.6332 0.1505 43 1 2.3484 11.4310 -2.1957 44 1 3.6238 8.4172 3.8986 45 1 2.3494 9.4175 3.1607 46 1 2.0446 7.0243 2.5902 47 1 2.3994 7.9884 1.1365 48 1 1.1244 1.7851 2.9411 49 1 4.2018 2.3804 3.0449 50 1 3.0889 2.1659 4.4999 51 1 2.5233 -0.1816 3.7215 52 1 3.6357 0.0322 2.2661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026589063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:51 Heat of formation + Delta-G solvation = 43.876266 kcal Electronic energy + Delta-G solvation = -31091.344218 eV Core-core repulsion = 27092.118718 eV Total energy + Delta-G solvation = -3999.225500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.59750 -40.67886 -39.13355 -37.95229 -35.97766 -35.45494 -34.43583 -32.18197 -31.59469 -31.29398 -30.66626 -28.99312 -25.78201 -25.33934 -24.25889 -23.61611 -23.44452 -23.19196 -22.46540 -21.06695 -20.50618 -19.85126 -19.19322 -18.54455 -17.22916 -17.19685 -16.65840 -16.51247 -16.15616 -15.79210 -15.64592 -15.48949 -15.37371 -15.19242 -15.16947 -14.69656 -14.47488 -14.37054 -13.62213 -13.55329 -13.37045 -13.21247 -13.03733 -13.00599 -12.94152 -12.79174 -12.60904 -12.50739 -12.33012 -12.22420 -12.14818 -12.02801 -11.84328 -11.58728 -11.49277 -11.17284 -11.16488 -11.13337 -10.81696 -10.60703 -10.41503 -9.95480 -9.55850 -8.89558 -7.88206 -5.13023 0.48608 1.14498 1.33189 1.48120 1.49961 1.55625 2.38614 2.52372 2.60327 2.79463 3.36158 3.44581 3.46443 3.84049 3.89705 3.95407 3.98487 4.02869 4.03464 4.09769 4.14561 4.22293 4.26812 4.31144 4.44165 4.45380 4.49558 4.66421 4.72217 4.72860 4.74870 4.76289 4.78497 4.84390 4.93486 5.01702 5.05909 5.14270 5.16007 5.18841 5.25819 5.32015 5.36786 5.37942 5.39193 5.52773 5.62621 5.67716 5.73684 5.87670 6.35543 6.50212 6.75220 7.42191 7.42676 8.21813 8.45391 9.35061 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002482 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.323712 B =11277.629334 C =12237.181480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.351 5.351 4 N -0.318 5.318 5 C 0.079 3.921 6 C -0.314 4.314 7 C 0.591 3.409 8 O -0.566 6.566 9 N -0.716 5.716 10 C 0.166 3.834 11 C -0.114 4.114 12 C -0.110 4.110 13 C 0.164 3.836 14 N -0.727 5.727 15 C -0.232 4.232 16 H 0.070 0.930 17 C -0.076 4.076 18 N -0.967 5.967 19 Si 0.963 3.037 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.284 1.284 23 C -0.123 4.123 24 C -0.107 4.107 25 C 0.185 3.815 26 C -0.116 4.116 27 C -0.128 4.128 28 C -0.152 4.152 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.207 0.793 35 H 0.405 0.595 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.376 0.624 43 H 0.248 0.752 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.129 0.871 49 H 0.075 0.925 50 H 0.102 0.898 51 H 0.129 0.871 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 -27.364 6.748 28.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.130 5.130 4 N -0.138 5.138 5 C -0.108 4.108 6 C -0.328 4.328 7 C 0.379 3.621 8 O -0.447 6.447 9 N -0.366 5.366 10 C 0.061 3.939 11 C -0.152 4.152 12 C -0.149 4.149 13 C 0.056 3.944 14 N -0.369 5.369 15 C -0.364 4.364 16 H 0.088 0.912 17 C -0.268 4.268 18 N -0.619 5.619 19 Si 0.794 3.206 20 H -0.206 1.206 21 H -0.224 1.224 22 H -0.211 1.211 23 C -0.163 4.163 24 C -0.146 4.146 25 C 0.051 3.949 26 C -0.136 4.136 27 C -0.166 4.166 28 C -0.189 4.189 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.223 0.777 35 H 0.240 0.760 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.209 0.791 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.147 0.853 49 H 0.094 0.906 50 H 0.121 0.879 51 H 0.147 0.853 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.435 -28.170 6.607 28.970 hybrid contribution -0.744 1.942 -0.674 2.186 sum 0.691 -26.228 5.933 26.900 Atomic orbital electron populations 1.22151 0.93304 1.04679 1.02148 1.22205 0.96108 0.75852 1.06365 1.48871 1.48629 1.13102 1.02355 1.77141 1.23271 1.04887 1.08460 1.24369 0.96602 0.95960 0.93856 1.20090 1.22176 0.96730 0.93842 1.17384 0.76227 0.81607 0.86870 1.90723 1.56436 1.82400 1.15101 1.45832 1.64725 1.14990 1.11051 1.20772 0.93945 0.84881 0.94256 1.21649 0.98084 0.96603 0.98893 1.21653 0.96934 0.95697 1.00575 1.20497 0.92218 0.94237 0.87482 1.42606 1.62805 1.26077 1.05373 1.19565 1.23760 0.99739 0.93323 0.91206 1.25396 1.03630 1.02197 0.95550 1.69782 1.52195 1.41708 0.98169 0.85355 0.78853 0.80547 0.75886 1.20580 1.22407 1.21081 1.21975 0.99667 0.96419 0.98256 1.21587 0.97516 0.95887 0.99611 1.20827 0.93652 0.90290 0.90158 1.20489 0.99159 1.06526 0.87399 1.22668 0.97062 0.97839 0.99023 1.23299 1.01260 0.91032 1.03353 0.93379 0.87435 0.92527 0.87462 0.86158 0.77658 0.75988 0.89886 0.92731 0.89658 0.89346 0.91726 0.93866 0.79064 0.94308 0.91025 0.94522 0.94150 0.93896 0.85324 0.90646 0.87923 0.85273 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.24 71.98 0.74 -0.98 16 2 C 0.11 1.32 6.93 86.38 0.60 1.92 16 3 N -0.35 -7.14 3.58 -333.01 -1.19 -8.33 16 4 N -0.32 -7.84 12.50 -56.27 -0.70 -8.54 16 5 C 0.08 1.91 11.50 85.65 0.99 2.89 16 6 C -0.31 -8.28 6.10 -20.15 -0.12 -8.40 16 7 C 0.59 17.57 7.62 86.66 0.66 18.23 16 8 O -0.57 -19.15 13.16 -4.06 -0.05 -19.20 16 9 N -0.72 -19.93 5.07 -445.80 -2.26 -22.19 16 10 C 0.17 5.00 2.46 44.99 0.11 5.11 16 11 C -0.11 -3.29 5.22 30.59 0.16 -3.13 16 12 C -0.11 -3.33 5.61 30.59 0.17 -3.16 16 13 C 0.16 6.30 3.10 44.99 0.14 6.44 16 14 N -0.73 -35.49 4.28 -322.94 -1.38 -36.87 16 15 C -0.23 -12.79 9.93 84.03 0.83 -11.95 16 16 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 18 N -0.97 -58.70 13.06 21.65 0.28 -58.41 16 19 Si 0.96 46.77 29.55 68.60 2.03 48.79 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 23 C -0.12 -4.46 5.61 30.58 0.17 -4.29 16 24 C -0.11 -3.91 5.33 30.58 0.16 -3.75 16 25 C 0.18 4.21 6.44 42.14 0.27 4.48 16 26 C -0.12 -2.14 5.19 -11.54 -0.06 -2.20 16 27 C -0.13 -2.46 8.00 30.62 0.25 -2.22 16 28 C -0.15 -1.82 9.00 30.62 0.28 -1.54 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.12 0.83 6.46 -2.39 -0.02 0.81 16 34 H 0.21 3.89 7.53 -2.91 -0.02 3.87 16 35 H 0.40 9.82 7.59 -92.70 -0.70 9.12 16 36 H 0.08 2.52 7.58 -2.39 -0.02 2.51 16 37 H 0.05 1.85 6.50 -2.39 -0.02 1.83 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 42 H 0.38 19.40 6.06 -92.71 -0.56 18.84 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.85 7.60 -2.39 -0.02 1.83 16 48 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.07 1.80 7.53 -2.39 -0.02 1.78 16 50 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.10 1.08 7.98 -2.39 -0.02 1.06 16 Total: -1.00 -72.18 411.19 2.19 -69.99 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.34 Total: 41.18 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.81 Total: -6.42 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -5.25 Total: -134.34 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -72.18 2.19 -69.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026589063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.867 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds