Wall clock time and date at job start Wed Apr 1 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47202 * 2 1 4 4 N 1.40085 * 126.03807 * 90.02682 * 3 2 1 5 5 C 1.30837 * 108.20826 * 179.97438 * 4 3 2 6 6 C 1.50700 * 125.89646 * 179.97438 * 5 4 3 7 7 C 1.39865 * 108.20074 * 359.97438 * 5 4 3 8 8 C 1.50698 * 126.03939 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47715 * 270.00366 * 8 7 5 10 10 O 1.21283 * 119.99584 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00640 * 179.97438 * 9 8 7 12 12 C 1.47161 * 120.70529 * 359.72215 * 11 9 8 13 13 C 1.54322 * 107.80323 * 132.68567 * 12 11 9 14 14 H 1.08998 * 112.53341 * 182.37896 * 13 12 11 15 15 C 1.54550 * 107.97964 * 306.73386 * 13 12 11 16 16 C 1.55856 * 104.99883 * 89.01281 * 15 13 12 17 17 C 1.54556 * 104.09409 * 0.02562 * 16 15 13 18 18 H 1.09000 * 112.17988 * 146.81756 * 17 16 15 19 19 C 1.47158 * 120.71125 * 179.97438 * 11 9 8 20 20 N 1.48307 * 107.10700 * 58.61420 * 13 12 11 21 21 C 1.36930 * 128.07460 * 106.57366 * 20 13 12 22 22 H 1.08005 * 119.99951 * 164.87850 * 21 20 13 23 23 C 1.38811 * 120.00419 * 344.87897 * 21 20 13 24 24 N 1.31616 * 119.99845 * 350.26012 * 23 21 20 25 25 Si 1.86796 * 120.00200 * 170.26032 * 23 21 20 26 26 H 1.48503 * 109.47361 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47424 * 120.00230 * 25 23 21 28 28 H 1.48502 * 109.47056 * 240.00187 * 25 23 21 29 29 C 1.34947 * 126.04130 * 270.00378 * 3 2 1 30 30 C 1.50701 * 126.12443 * 0.02562 * 29 3 2 31 31 H 1.08997 * 109.47281 * 299.99631 * 1 2 3 32 32 H 1.09002 * 109.47323 * 59.99622 * 1 2 3 33 33 H 1.09003 * 109.47616 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46916 * 240.00226 * 2 1 3 35 35 H 1.09002 * 109.47323 * 120.00378 * 2 1 3 36 36 H 1.09004 * 109.47261 * 90.02503 * 6 5 4 37 37 H 1.09006 * 109.46975 * 210.02397 * 6 5 4 38 38 H 1.08997 * 109.46988 * 330.02301 * 6 5 4 39 39 H 1.09005 * 109.46895 * 30.00240 * 8 7 5 40 40 H 1.08998 * 109.47266 * 149.99691 * 8 7 5 41 41 H 1.09005 * 109.75081 * 252.38336 * 12 11 9 42 42 H 1.08997 * 109.75422 * 13.12089 * 12 11 9 43 43 H 1.09000 * 110.36314 * 207.85844 * 15 13 12 44 44 H 1.08996 * 110.36759 * 330.06774 * 15 13 12 45 45 H 1.09004 * 110.89797 * 241.33779 * 16 15 13 46 46 H 1.08999 * 110.55761 * 118.51756 * 16 15 13 47 47 H 1.08997 * 109.75426 * 346.87992 * 19 11 9 48 48 H 1.09005 * 109.75352 * 107.56426 * 19 11 9 49 49 H 0.96999 * 120.00465 * 179.97438 * 24 23 21 50 50 H 1.09004 * 109.47290 * 90.02635 * 30 29 3 51 51 H 1.08997 * 109.47434 * 210.02805 * 30 29 3 52 52 H 1.09004 * 109.47201 * 330.02590 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 1.1328 5 6 2.7091 3.3322 0.7322 6 6 3.1141 4.4776 1.6238 7 6 2.7124 3.3406 -0.6665 8 6 3.1204 4.4949 -1.5452 9 6 1.9169 5.3531 -1.8384 10 8 0.8342 5.0564 -1.3794 11 7 2.0436 6.4504 -2.6106 12 6 3.3510 6.8283 -3.1706 13 6 3.1492 7.1463 -4.6672 14 1 4.0829 7.3972 -5.1705 15 6 2.4406 5.9380 -5.3203 16 6 0.9178 6.2266 -5.1566 17 6 0.8691 7.5842 -4.4196 18 1 0.0095 8.1841 -4.7186 19 6 0.8786 7.2991 -2.9074 20 7 2.1554 8.2441 -4.7498 21 6 2.3745 9.5599 -5.0589 22 1 1.5439 10.1985 -5.3213 23 6 3.6640 10.0732 -5.0351 24 7 4.6481 9.3571 -4.5342 25 14 4.0025 11.7802 -5.7139 26 1 2.7370 12.3733 -6.2159 27 1 4.5599 12.6391 -4.6383 28 1 4.9800 11.6850 -6.8278 29 6 2.2829 2.1298 -1.0912 30 6 2.1284 1.6949 -2.5258 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 4.1807 4.4113 1.8386 37 1 2.9028 5.4216 1.1212 38 1 2.5519 4.4286 2.5562 39 1 3.8761 5.0914 -1.0339 40 1 3.5306 4.1127 -2.4799 41 1 3.7333 7.7078 -2.6524 42 1 4.0521 6.0011 -3.0601 43 1 2.7013 5.8710 -6.3765 44 1 2.7098 5.0162 -4.8047 45 1 0.4375 5.4525 -4.5580 46 1 0.4365 6.3069 -6.1313 47 1 -0.0371 6.7798 -2.6247 48 1 0.9556 8.2363 -2.3560 49 1 5.5493 9.7155 -4.5178 50 1 1.1226 1.9334 -2.8715 51 1 2.8585 2.2168 -3.1443 52 1 2.2925 0.6198 -2.5992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029556916.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:35 Heat of formation + Delta-G solvation = 52.933907 kcal Electronic energy + Delta-G solvation = -32374.056839 eV Core-core repulsion = 28375.224108 eV Total energy + Delta-G solvation = -3998.832731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.39580 -41.31732 -39.17303 -35.93124 -35.27699 -34.25424 -33.84256 -32.53111 -31.98437 -30.96512 -30.15602 -28.26096 -27.83445 -26.77137 -25.33632 -25.25499 -23.74390 -21.60429 -21.23984 -20.57281 -20.28668 -19.89568 -18.52689 -17.75041 -17.33324 -16.93245 -16.78211 -16.37826 -15.97110 -15.61228 -15.39187 -15.33286 -14.75220 -14.63929 -14.38896 -14.30064 -14.15793 -14.09480 -14.01985 -13.73098 -13.50802 -13.28792 -13.25282 -13.13761 -13.01817 -12.87788 -12.79338 -12.68326 -12.59997 -12.51627 -12.45942 -12.15044 -11.90519 -11.74058 -11.44479 -11.42973 -11.32721 -11.08821 -10.85796 -10.51995 -9.93158 -9.61042 -9.16203 -8.62989 -7.81872 -5.15027 0.94329 1.50215 1.53320 1.60790 1.64191 1.71336 1.84507 2.36615 2.55010 3.37719 3.54895 3.55768 3.76441 3.88902 4.03325 4.09547 4.13146 4.13397 4.22359 4.24265 4.28301 4.34350 4.37904 4.43124 4.53069 4.56555 4.63149 4.70362 4.72800 4.74780 4.77114 4.79541 4.82429 4.86380 4.97222 5.05683 5.06799 5.08970 5.13867 5.18061 5.20096 5.22866 5.33646 5.41685 5.44138 5.60040 5.69272 5.78992 5.92135 6.24528 6.29142 6.73549 6.83095 7.13762 7.40849 7.76920 8.56788 9.29875 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.002894 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.069055 B = 9674.228698 C =10191.944763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 N -0.374 5.374 4 N -0.334 5.334 5 C 0.071 3.929 6 C -0.070 4.070 7 C -0.238 4.238 8 C -0.049 4.049 9 C 0.512 3.488 10 O -0.587 6.587 11 N -0.594 5.594 12 C 0.118 3.882 13 C 0.163 3.837 14 H 0.088 0.912 15 C -0.123 4.123 16 C -0.112 4.112 17 C 0.129 3.871 18 H 0.076 0.924 19 C 0.110 3.890 20 N -0.604 5.604 21 C -0.234 4.234 22 H 0.071 0.929 23 C -0.048 4.048 24 N -0.929 5.929 25 Si 0.966 3.034 26 H -0.275 1.275 27 H -0.297 1.297 28 H -0.292 1.292 29 C 0.097 3.903 30 C -0.091 4.091 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.035 0.965 49 H 0.249 0.751 50 H 0.076 0.924 51 H 0.094 0.906 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -19.141 4.063 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.002 3.998 3 N -0.156 5.156 4 N -0.157 5.157 5 C -0.094 4.094 6 C -0.129 4.129 7 C -0.250 4.250 8 C -0.089 4.089 9 C 0.302 3.698 10 O -0.468 6.468 11 N -0.325 5.325 12 C -0.006 4.006 13 C 0.055 3.945 14 H 0.106 0.894 15 C -0.162 4.162 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.094 0.906 19 C -0.015 4.015 20 N -0.326 5.326 21 C -0.363 4.363 22 H 0.089 0.911 23 C -0.243 4.243 24 N -0.577 5.577 25 Si 0.796 3.204 26 H -0.200 1.200 27 H -0.225 1.225 28 H -0.219 1.219 29 C -0.031 4.031 30 C -0.149 4.149 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.095 0.905 51 H 0.113 0.887 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.003 -19.987 5.276 20.888 hybrid contribution 0.301 2.090 -0.624 2.202 sum -2.702 -17.896 4.652 18.687 Atomic orbital electron populations 1.22137 0.94169 1.04143 1.01696 1.21972 0.95374 0.76597 1.05874 1.48721 1.51407 1.12827 1.02685 1.77147 1.24577 1.04721 1.09286 1.22474 0.98187 0.94474 0.94267 1.20182 1.02576 0.92660 0.97444 1.19254 1.16559 0.96096 0.93046 1.19878 0.95133 0.93320 1.00604 1.21117 0.90889 0.80655 0.77118 1.90610 1.30178 1.72541 1.53444 1.48210 1.10215 1.25033 1.49082 1.22391 0.82440 0.99339 0.96413 1.21915 0.94303 0.85777 0.92461 0.89418 1.22793 0.95099 0.98127 1.00189 1.22629 0.96770 0.96076 0.99593 1.22101 0.90267 0.93772 0.91724 0.90643 1.22097 0.88765 0.92855 0.97787 1.45332 1.03049 1.04352 1.79869 1.19249 0.93203 0.85653 1.38170 0.91146 1.25392 0.96375 1.00911 1.01647 1.69967 0.99985 1.38038 1.49688 0.85209 0.77476 0.80501 0.77208 1.20010 1.22478 1.21937 1.21242 0.98049 0.91775 0.92011 1.20579 1.03853 1.03435 0.86992 0.94175 0.92884 0.87627 0.86056 0.88291 0.88710 0.91442 0.91028 0.87769 0.86551 0.93713 0.88865 0.92416 0.90731 0.91732 0.91771 0.90608 0.94665 0.94159 0.90498 0.88694 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 71.98 0.74 -1.74 16 2 C 0.12 1.89 6.96 86.38 0.60 2.49 16 3 N -0.37 -9.41 3.61 -334.70 -1.21 -10.62 16 4 N -0.33 -10.36 12.58 -47.39 -0.60 -10.95 16 5 C 0.07 2.17 7.22 43.10 0.31 2.48 16 6 C -0.07 -1.78 10.12 71.24 0.72 -1.06 16 7 C -0.24 -6.87 4.59 -20.15 -0.09 -6.96 16 8 C -0.05 -1.32 4.02 29.10 0.12 -1.21 16 9 C 0.51 17.69 7.70 87.66 0.67 18.36 16 10 O -0.59 -24.14 15.50 -3.04 -0.05 -24.19 16 11 N -0.59 -21.54 2.25 -814.15 -1.83 -23.37 16 12 C 0.12 4.44 5.74 86.70 0.50 4.94 16 13 C 0.16 6.72 3.13 45.62 0.14 6.86 16 14 H 0.09 4.19 6.39 -2.39 -0.02 4.18 16 15 C -0.12 -4.08 6.22 32.11 0.20 -3.88 16 16 C -0.11 -3.69 6.31 32.11 0.20 -3.49 16 17 C 0.13 5.04 4.28 45.48 0.19 5.23 16 18 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 19 C 0.11 4.29 5.88 86.55 0.51 4.80 16 20 N -0.60 -27.99 2.81 -635.90 -1.79 -29.78 16 21 C -0.23 -12.15 10.37 84.03 0.87 -11.28 16 22 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16 23 C -0.05 -2.53 5.41 84.86 0.46 -2.07 16 24 N -0.93 -49.55 10.42 21.65 0.23 -49.33 16 25 Si 0.97 43.36 29.56 68.60 2.03 45.39 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 29 C 0.10 2.45 6.93 41.40 0.29 2.73 16 30 C -0.09 -1.53 9.90 71.24 0.71 -0.83 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 1.10 7.05 -2.39 -0.02 1.08 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.80 7.92 -2.38 -0.02 1.78 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 2.64 7.83 -2.38 -0.02 2.63 16 40 H 0.12 2.58 6.61 -2.39 -0.02 2.56 16 41 H 0.04 2.03 7.82 -2.38 -0.02 2.01 16 42 H 0.09 2.85 6.08 -2.39 -0.01 2.83 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.09 7.85 -2.39 -0.02 2.08 16 45 H 0.06 2.04 7.84 -2.38 -0.02 2.02 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.08 2.89 7.11 -2.39 -0.02 2.88 16 48 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 50 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 51 H 0.09 1.43 7.15 -2.39 -0.02 1.41 16 52 H 0.10 1.03 7.08 -2.39 -0.02 1.02 16 Total: -1.00 -69.29 405.50 4.83 -64.46 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.91 Total: 22.99 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 7.14 Total: 15.39 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.19 Total: -124.04 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.19 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.29 4.83 -64.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029556916.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.393 kcal (2) G-P(sol) polarization free energy of solvation -69.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds