Wall clock time and date at job start Wed Apr 1 2020 04:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46863 * 2 1 4 4 C 1.34773 * 119.99878 * 269.61132 * 3 2 1 5 5 O 1.21629 * 119.99794 * 186.78252 * 4 3 2 6 6 C 1.47156 * 120.00427 * 6.79088 * 4 3 2 7 7 C 1.38406 * 126.88345 * 7.40104 * 6 4 3 8 8 C 1.39672 * 105.36127 * 180.02562 * 7 6 4 9 9 C 1.50702 * 126.06777 * 180.02562 * 8 7 6 10 10 C 1.53001 * 117.50157 * 343.62154 * 9 8 7 11 11 C 1.52998 * 60.00092 * 252.51184 * 10 9 8 12 12 N 1.30863 * 107.86107 * 0.02562 * 8 7 6 13 13 N 1.28438 * 110.92573 * 359.71502 * 12 8 7 14 14 C 1.46497 * 125.18921 * 180.28024 * 13 12 8 15 15 C 1.53001 * 109.47159 * 274.59717 * 14 13 12 16 16 C 1.46499 * 120.00060 * 89.60794 * 3 2 1 17 17 H 1.09005 * 110.88796 * 4.10924 * 16 3 2 18 18 C 1.55160 * 111.00821 * 240.18393 * 16 3 2 19 19 C 1.54327 * 102.93900 * 277.42826 * 18 16 3 20 20 N 1.47021 * 107.27049 * 337.80543 * 19 18 16 21 21 C 1.36939 * 125.64532 * 178.90716 * 20 19 18 22 22 H 1.07997 * 120.00355 * 175.34653 * 21 20 19 23 23 C 1.38815 * 119.99699 * 355.34613 * 21 20 19 24 24 N 1.31613 * 120.00647 * 5.38940 * 23 21 20 25 25 Si 1.86805 * 119.99793 * 185.39312 * 23 21 20 26 26 H 1.48502 * 109.47227 * 94.99641 * 25 23 21 27 27 H 1.48499 * 109.47329 * 214.99741 * 25 23 21 28 28 H 1.48501 * 109.47046 * 334.99818 * 25 23 21 29 29 C 1.47423 * 108.70491 * 358.94145 * 20 19 18 30 30 H 1.09001 * 109.47383 * 63.44367 * 1 2 3 31 31 H 1.09008 * 109.46878 * 183.43565 * 1 2 3 32 32 H 1.08996 * 109.47541 * 303.43397 * 1 2 3 33 33 H 1.08992 * 109.47271 * 240.00645 * 2 1 3 34 34 H 1.08994 * 109.47040 * 119.99355 * 2 1 3 35 35 H 1.08004 * 127.31775 * 0.02562 * 7 6 4 36 36 H 1.09002 * 115.54731 * 129.32745 * 9 8 7 37 37 H 1.08998 * 117.49568 * 0.02562 * 10 9 8 38 38 H 1.09004 * 117.49924 * 145.01965 * 10 9 8 39 39 H 1.09009 * 117.49608 * 252.51542 * 11 10 9 40 40 H 1.08997 * 117.50166 * 107.49093 * 11 10 9 41 41 H 1.09000 * 109.47630 * 34.60148 * 14 13 12 42 42 H 1.09000 * 109.47448 * 154.60338 * 14 13 12 43 43 H 1.09001 * 109.47454 * 184.98666 * 15 14 13 44 44 H 1.08997 * 109.47644 * 304.99078 * 15 14 13 45 45 H 1.09003 * 109.46755 * 64.99295 * 15 14 13 46 46 H 1.08997 * 110.71717 * 159.06542 * 18 16 3 47 47 H 1.08999 * 110.71633 * 35.78956 * 18 16 3 48 48 H 1.09002 * 109.87896 * 218.38835 * 19 18 16 49 49 H 1.09002 * 109.87842 * 97.22548 * 19 18 16 50 50 H 0.96997 * 120.00345 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.36567 * 142.96611 * 29 20 19 52 52 H 1.09005 * 110.36608 * 265.17840 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2503 2.0139 -1.1672 5 8 2.7709 3.1132 -1.1700 6 6 1.8738 1.3749 -2.4381 7 6 1.1520 0.2048 -2.5978 8 6 1.0557 0.0149 -3.9782 9 6 0.3583 -1.1279 -4.6700 10 6 0.0289 -2.3654 -3.8328 11 6 1.1509 -2.4211 -4.8715 12 7 1.6785 1.0056 -4.5640 13 7 2.1626 1.8200 -3.6969 14 6 2.9133 3.0385 -4.0099 15 6 4.3895 2.6903 -4.2117 16 6 2.2542 2.0748 1.2687 17 1 2.0892 1.4062 2.1136 18 6 1.3692 3.3442 1.3817 19 6 2.1728 4.3973 0.5900 20 7 3.5718 3.9464 0.5593 21 6 4.6049 4.5922 -0.0658 22 1 5.6135 4.2189 0.0324 23 6 4.3557 5.7268 -0.8258 24 7 3.1456 6.2434 -0.8600 25 14 5.7378 6.5204 -1.8003 26 1 5.7147 6.0127 -3.1956 27 1 5.5561 7.9942 -1.8067 28 1 7.0415 6.1852 -1.1731 29 6 3.6780 2.6834 1.3123 30 1 -0.3634 0.4594 -0.9192 31 1 -0.3633 -1.0259 0.0616 32 1 -0.3634 0.5662 0.8575 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 0.7489 -0.4271 -1.8202 36 1 -0.3489 -0.8444 -5.4495 37 1 0.3162 -2.3528 -2.7814 38 1 -0.8953 -2.8962 -4.0612 39 1 0.9647 -2.9885 -5.7835 40 1 2.1766 -2.4453 -4.5037 41 1 2.5174 3.4851 -4.9219 42 1 2.8164 3.7465 -3.1869 43 1 4.9623 3.6063 -4.3568 44 1 4.7622 2.1641 -3.3329 45 1 4.4956 2.0526 -5.0893 46 1 1.2591 3.6460 2.4232 47 1 0.3949 3.1771 0.9224 48 1 2.1060 5.3651 1.0871 49 1 1.7851 4.4725 -0.4260 50 1 2.9714 7.0360 -1.3914 51 1 4.3916 2.0141 0.8317 52 1 3.9772 2.8797 2.3420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033872934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:10 Heat of formation + Delta-G solvation = 156.008202 kcal Electronic energy + Delta-G solvation = -33785.713586 eV Core-core repulsion = 29791.350491 eV Total energy + Delta-G solvation = -3994.363095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.57784 -41.10097 -38.19132 -37.66652 -37.00648 -35.02481 -34.24671 -31.95107 -31.20777 -30.67574 -30.44727 -28.69357 -26.34108 -25.54157 -24.79546 -23.82369 -23.38982 -23.04708 -22.00230 -21.74576 -20.57796 -19.43309 -18.69126 -17.93752 -17.56182 -16.98054 -16.87307 -16.57827 -16.39720 -16.13067 -15.71378 -15.57764 -15.27674 -15.21881 -14.77852 -14.17245 -13.78620 -13.73432 -13.63368 -13.47470 -13.35254 -13.23486 -13.04281 -12.86351 -12.76644 -12.73241 -12.55200 -12.31753 -12.21142 -12.19366 -12.06500 -11.97441 -11.79295 -11.62387 -11.56847 -11.42387 -11.31005 -11.01716 -10.52514 -10.18954 -9.85787 -9.66869 -9.30486 -8.27384 -7.60470 -4.83028 0.49846 1.42519 1.43794 1.44256 1.51026 1.60722 2.26304 2.55200 2.61238 3.01884 3.45695 3.57961 3.61167 3.81279 3.88160 3.96383 4.03098 4.06536 4.13525 4.16684 4.26488 4.27151 4.34155 4.39689 4.42516 4.50655 4.53616 4.59361 4.67589 4.75478 4.78292 4.86212 4.89946 4.93127 4.96845 5.00217 5.08397 5.09633 5.12231 5.14617 5.20472 5.30520 5.38733 5.51321 5.58062 5.64407 5.83932 5.86747 5.99483 6.13552 6.45666 6.66667 7.20118 7.36419 7.67290 8.07814 8.72244 9.50977 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.004845 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.531223 B = 5777.356826 C = 7459.971088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 N -0.593 5.593 4 C 0.517 3.483 5 O -0.445 6.445 6 C -0.037 4.037 7 C -0.207 4.207 8 C 0.043 3.957 9 C -0.094 4.094 10 C -0.144 4.144 11 C -0.166 4.166 12 N -0.309 5.309 13 N -0.266 5.266 14 C 0.114 3.886 15 C -0.141 4.141 16 C 0.152 3.848 17 H 0.138 0.862 18 C -0.146 4.146 19 C 0.204 3.796 20 N -0.582 5.582 21 C -0.194 4.194 22 H 0.058 0.942 23 C -0.047 4.047 24 N -0.939 5.939 25 Si 0.939 3.061 26 H -0.289 1.289 27 H -0.303 1.303 28 H -0.278 1.278 29 C 0.122 3.878 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.211 0.789 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.064 0.936 48 H -0.024 1.024 49 H 0.031 0.969 50 H 0.232 0.768 51 H 0.025 0.975 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -21.412 -0.885 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.037 4.037 3 N -0.329 5.329 4 C 0.302 3.698 5 O -0.314 6.314 6 C -0.166 4.166 7 C -0.235 4.235 8 C -0.114 4.114 9 C -0.113 4.113 10 C -0.181 4.181 11 C -0.204 4.204 12 N -0.141 5.141 13 N -0.053 5.053 14 C -0.006 4.006 15 C -0.199 4.199 16 C 0.048 3.952 17 H 0.156 0.844 18 C -0.185 4.185 19 C 0.079 3.921 20 N -0.307 5.307 21 C -0.324 4.324 22 H 0.076 0.924 23 C -0.240 4.240 24 N -0.590 5.590 25 Si 0.771 3.229 26 H -0.217 1.217 27 H -0.231 1.231 28 H -0.204 1.204 29 C -0.005 4.005 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.228 0.772 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.083 0.917 48 H -0.006 1.006 49 H 0.048 0.952 50 H 0.042 0.958 51 H 0.043 0.957 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.752 -20.010 -2.080 21.560 hybrid contribution 0.833 1.290 -0.210 1.550 sum -6.919 -18.720 -2.290 20.089 Atomic orbital electron populations 1.22425 0.94961 1.04004 1.02312 1.22332 0.95268 0.81148 1.04937 1.47477 1.67196 1.14638 1.03628 1.17683 0.82248 0.86598 0.83308 1.91568 1.36749 1.17533 1.85522 1.22026 1.07342 0.99198 0.88006 1.23375 1.04739 0.97814 0.97523 1.21628 1.01347 0.96282 0.92101 1.20103 1.02693 0.85348 1.03192 1.23136 1.00358 0.97058 0.97550 1.23024 0.97021 0.98146 1.02234 1.72973 1.15324 1.03851 1.21968 1.45755 1.38332 1.18676 1.02501 1.22067 0.91973 0.82663 1.03925 1.21848 0.93709 1.02627 1.01677 1.22259 0.93958 0.93302 0.85652 0.84431 1.23218 0.98216 0.96255 1.00814 1.20821 0.83928 0.91370 0.95938 1.44247 1.04580 1.22535 1.59316 1.18956 0.87009 1.05015 1.21445 0.92361 1.25052 0.97380 0.99610 1.01933 1.70181 1.20258 1.23270 1.45293 0.85627 0.80139 0.77178 0.79987 1.21716 1.23107 1.20360 1.22024 0.95751 0.87984 0.94712 0.93239 0.88191 0.92026 0.89196 0.87750 0.77237 0.86501 0.87629 0.85873 0.86838 0.89920 0.88394 0.88419 0.90625 0.93763 0.90952 0.89904 0.91682 1.00551 0.95164 0.95792 0.95697 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 8.90 71.98 0.64 -2.16 16 2 C 0.08 1.61 5.57 86.38 0.48 2.09 16 3 N -0.59 -17.83 2.56 -794.29 -2.03 -19.87 16 4 C 0.52 20.26 7.10 86.59 0.61 20.88 16 5 O -0.44 -21.70 6.39 -4.12 -0.03 -21.73 16 6 C -0.04 -1.32 6.77 40.78 0.28 -1.05 16 7 C -0.21 -5.70 6.85 22.66 0.16 -5.55 16 8 C 0.04 1.24 6.85 43.05 0.30 1.53 16 9 C -0.09 -1.89 6.33 -11.54 -0.07 -1.96 16 10 C -0.14 -1.83 10.02 30.59 0.31 -1.52 16 11 C -0.17 -2.64 10.23 30.59 0.31 -2.33 16 12 N -0.31 -10.82 11.90 -47.49 -0.57 -11.38 16 13 N -0.27 -10.04 3.35 -334.70 -1.12 -11.16 16 14 C 0.11 4.46 6.71 86.38 0.58 5.04 16 15 C -0.14 -5.08 10.24 71.98 0.74 -4.34 16 16 C 0.15 4.68 3.81 46.38 0.18 4.86 16 17 H 0.14 2.89 7.87 -2.38 -0.02 2.87 16 18 C -0.15 -5.25 6.45 31.79 0.20 -5.05 16 19 C 0.20 10.36 4.18 86.73 0.36 10.73 16 20 N -0.58 -30.04 1.78 -691.98 -1.23 -31.27 16 21 C -0.19 -11.22 9.06 84.03 0.76 -10.45 16 22 H 0.06 3.36 7.83 -2.91 -0.02 3.33 16 23 C -0.05 -2.77 5.35 84.86 0.45 -2.31 16 24 N -0.94 -58.42 10.34 21.65 0.22 -58.20 16 25 Si 0.94 47.89 29.56 68.60 2.03 49.92 16 26 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 27 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 28 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 29 C 0.12 4.88 6.38 86.85 0.55 5.44 16 30 H 0.05 1.00 6.08 -2.39 -0.01 0.99 16 31 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.75 4.84 -2.39 -0.01 1.74 16 34 H 0.10 1.39 7.93 -2.39 -0.02 1.38 16 35 H 0.21 4.18 2.74 -2.91 -0.01 4.17 16 36 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.11 1.18 7.22 -2.39 -0.02 1.16 16 38 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.10 4.70 5.95 -2.39 -0.01 4.68 16 43 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 48 H -0.02 -1.38 7.62 -2.39 -0.02 -1.40 16 49 H 0.03 1.79 5.27 -2.39 -0.01 1.77 16 50 H 0.23 14.39 8.31 -92.71 -0.77 13.62 16 51 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -77.03 393.66 5.03 -72.00 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.92 Total: 17.86 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.84 Total: 13.84 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -4.73 Total: -131.88 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.03 Total: -21.73 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -77.03 5.03 -72.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033872934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.004 kcal (2) G-P(sol) polarization free energy of solvation -77.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds