Wall clock time and date at job start Wed Apr 1 2020 04:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47088 * 2 1 4 4 N 1.28471 * 124.88468 * 90.02713 * 3 2 1 5 5 C 1.31808 * 110.07404 * 179.97438 * 4 3 2 6 6 C 1.47714 * 126.51566 * 179.97438 * 5 4 3 7 7 O 1.21575 * 119.99545 * 173.24382 * 6 5 4 8 8 N 1.34769 * 119.99950 * 353.24045 * 6 5 4 9 9 C 1.46924 * 120.63265 * 353.04905 * 8 6 5 10 10 C 1.53196 * 108.77744 * 233.58743 * 9 8 6 11 11 C 1.53045 * 109.31260 * 305.36372 * 10 9 8 12 12 H 1.08996 * 109.45963 * 301.34647 * 11 10 9 13 13 N 1.46491 * 109.45896 * 181.38508 * 11 10 9 14 14 C 1.36935 * 120.00359 * 85.00380 * 13 11 10 15 15 H 1.08005 * 119.99499 * 359.97438 * 14 13 11 16 16 C 1.38807 * 120.00343 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00232 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47465 * 60.00151 * 18 16 14 20 20 H 1.48503 * 109.47085 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47357 * 300.00058 * 18 16 14 22 22 C 1.53048 * 109.53579 * 61.36776 * 11 10 9 23 23 H 1.09001 * 109.50032 * 58.58079 * 22 11 10 24 24 C 1.52991 * 109.49510 * 178.65084 * 22 11 10 25 25 C 1.46926 * 120.62856 * 173.03288 * 8 6 5 26 26 C 1.41498 * 106.96515 * 0.22876 * 5 4 3 27 27 C 1.35037 * 124.88898 * 270.02029 * 3 2 1 28 28 C 1.50707 * 126.38047 * 0.04321 * 27 3 2 29 29 C 1.53002 * 117.49433 * 213.61632 * 28 27 3 30 30 C 1.52999 * 59.99935 * 252.51193 * 29 28 27 31 31 H 1.09001 * 109.47043 * 300.00106 * 1 2 3 32 32 H 1.08999 * 109.47087 * 59.99594 * 1 2 3 33 33 H 1.08992 * 109.47142 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46855 * 240.00414 * 2 1 3 35 35 H 1.08999 * 109.47087 * 120.00406 * 2 1 3 36 36 H 1.09000 * 109.58421 * 113.80450 * 9 8 6 37 37 H 1.08997 * 109.59179 * 353.37583 * 9 8 6 38 38 H 1.08998 * 109.49471 * 185.41704 * 10 9 8 39 39 H 1.08992 * 109.50074 * 65.31661 * 10 9 8 40 40 H 0.97012 * 120.00370 * 264.99898 * 13 11 10 41 41 H 0.96996 * 119.99919 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47865 * 60.00454 * 24 22 11 43 43 H 1.09010 * 109.46936 * 179.97438 * 24 22 11 44 44 H 1.08997 * 109.47721 * 299.99440 * 24 22 11 45 45 H 1.09000 * 109.58948 * 6.61976 * 25 8 6 46 46 H 1.09005 * 109.70441 * 246.26700 * 25 8 6 47 47 H 1.07997 * 127.25006 * 179.74651 * 26 5 4 48 48 H 1.08999 * 115.55098 * 359.32407 * 28 27 3 49 49 H 1.09000 * 117.49652 * 0.02562 * 29 28 27 50 50 H 1.08997 * 117.49353 * 145.02003 * 29 28 27 51 51 H 1.09004 * 117.49754 * 252.51537 * 30 29 28 52 52 H 1.08995 * 117.49923 * 107.49088 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2638 2.0737 1.0539 5 6 2.6889 3.2750 0.7169 6 6 3.0734 4.3623 1.6400 7 8 3.5665 5.3842 1.2035 8 7 2.8775 4.2214 2.9659 9 6 2.1467 3.0620 3.4956 10 6 1.0076 3.5633 4.3890 11 6 1.5783 4.4913 5.4639 12 1 2.3199 3.9518 6.0530 13 7 0.4963 4.9464 6.3403 14 6 0.1039 4.1746 7.4012 15 1 0.5919 3.2300 7.5914 16 6 -0.9210 4.6061 8.2319 17 7 -1.5161 5.7569 7.9997 18 14 -1.4558 3.5534 9.6794 19 1 -0.3070 3.3566 10.5996 20 1 -2.5602 4.2322 10.4038 21 1 -1.9258 2.2342 9.1853 22 6 2.2380 5.7011 4.7979 23 1 1.5028 6.2270 4.1888 24 6 2.7786 6.6447 5.8741 25 6 3.3910 5.2240 3.9091 26 6 2.7013 3.3271 -0.6970 27 6 2.2755 2.1095 -1.1077 28 6 2.1128 1.6537 -2.5349 29 6 3.1020 2.1982 -3.5674 30 6 1.6541 2.6925 -3.5603 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.8236 2.4400 4.0812 37 1 1.7351 2.4812 2.6703 38 1 0.5176 2.7138 4.8647 39 1 0.2840 4.1093 3.7839 40 1 0.0578 5.7947 6.1693 41 1 -2.2320 6.0585 8.5805 42 1 3.5146 6.1189 6.4821 43 1 3.2487 7.5060 5.3992 44 1 1.9580 6.9816 6.5075 45 1 3.8005 6.0696 3.3566 46 1 4.1705 4.7805 4.5287 47 1 2.9910 4.1619 -1.3180 48 1 1.7623 0.6298 -2.6644 49 1 3.8706 2.8858 -3.2142 50 1 3.4025 1.5324 -4.3763 51 1 1.0020 2.3518 -4.3646 52 1 1.4698 3.7055 -3.2025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036067465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:55 Heat of formation + Delta-G solvation = 87.034516 kcal Electronic energy + Delta-G solvation = -31210.772792 eV Core-core repulsion = 27213.418774 eV Total energy + Delta-G solvation = -3997.354018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.92862 -39.74247 -37.61435 -37.46747 -34.92463 -34.47450 -32.78023 -31.37490 -30.58090 -30.22075 -29.20121 -26.61735 -25.23735 -24.39932 -23.77374 -22.87922 -22.78028 -21.84915 -21.52262 -20.32466 -19.63730 -18.84364 -17.44233 -17.03234 -16.76433 -16.09152 -15.69228 -15.40868 -14.91372 -14.88985 -14.71110 -14.53733 -13.98228 -13.87138 -13.60380 -13.50846 -13.22464 -12.99392 -12.81352 -12.54381 -12.36128 -12.17444 -12.12142 -11.96743 -11.84226 -11.71723 -11.50545 -11.38353 -11.10199 -11.03723 -10.88473 -10.79308 -10.64641 -10.39104 -10.20455 -10.16692 -9.83483 -9.62858 -9.53003 -9.21309 -8.93064 -8.80401 -8.30944 -6.90336 -5.73162 -3.01211 1.49701 1.89988 2.19909 3.21029 3.44795 3.46426 3.49454 3.50367 3.58211 3.95505 4.12577 4.42737 4.49850 4.54006 4.56870 4.58568 4.61588 4.76867 5.02578 5.15293 5.22878 5.23608 5.29965 5.34932 5.41008 5.45710 5.49211 5.56289 5.57193 5.66580 5.69062 5.71179 5.78863 5.81325 5.87483 5.92861 6.09782 6.17718 6.20473 6.36398 6.44087 6.50211 6.53658 6.59618 6.70729 6.83218 6.91947 7.03415 7.16710 7.60758 7.72122 7.84738 8.36232 8.45419 9.56390 10.15211 10.50347 11.49464 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.002656 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.563867 B =10540.047023 C =11918.526326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.113 3.887 3 N -0.280 5.280 4 N -0.253 5.253 5 C -0.004 4.004 6 C 0.600 3.400 7 O -0.544 6.544 8 N -0.592 5.592 9 C 0.088 3.912 10 C -0.149 4.149 11 C 0.183 3.817 12 H 0.047 0.953 13 N -0.721 5.721 14 C -0.235 4.235 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.109 4.109 23 H 0.069 0.931 24 C -0.135 4.135 25 C 0.120 3.880 26 C -0.179 4.179 27 C 0.047 3.953 28 C -0.098 4.098 29 C -0.162 4.162 30 C -0.161 4.161 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.158 0.842 48 H 0.115 0.885 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 -11.751 -23.418 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.007 4.007 3 N -0.067 5.067 4 N -0.087 5.087 5 C -0.163 4.163 6 C 0.387 3.613 7 O -0.420 6.420 8 N -0.323 5.323 9 C -0.035 4.035 10 C -0.190 4.190 11 C 0.073 3.927 12 H 0.065 0.935 13 N -0.361 5.361 14 C -0.366 4.366 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.129 4.129 23 H 0.088 0.912 24 C -0.193 4.193 25 C -0.002 4.002 26 C -0.206 4.206 27 C -0.077 4.077 28 C -0.117 4.117 29 C -0.200 4.200 30 C -0.199 4.199 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.176 0.824 48 H 0.133 0.867 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.504 -12.127 -22.526 26.959 hybrid contribution -0.538 -0.026 0.261 0.598 sum 7.966 -12.152 -22.265 26.587 Atomic orbital electron populations 1.22191 0.93294 1.03633 1.03903 1.21990 0.96132 0.77324 1.05225 1.45669 1.46123 1.12344 1.02557 1.73523 1.17695 1.05119 1.12374 1.21878 1.07628 0.92923 0.93896 1.16983 0.78336 0.84754 0.81253 1.90752 1.46091 1.28502 1.76693 1.47972 1.54475 1.24853 1.05012 1.22529 0.94128 0.87045 0.99830 1.22650 0.97051 1.01291 0.97987 1.20219 0.90612 0.91847 0.90001 0.93511 1.42410 1.39388 1.23849 1.30474 1.19177 1.13451 1.00908 1.03084 0.91347 1.24720 0.99300 0.97370 0.99622 1.69652 1.27363 1.20817 1.40351 0.86303 0.77920 0.79454 0.82710 1.21342 1.21789 1.21413 1.21733 0.96864 0.97817 0.96529 0.91241 1.21655 1.01631 0.97853 0.98185 1.21742 0.96087 0.91744 0.90653 1.21340 1.08123 0.97700 0.93484 1.20391 1.05762 0.92483 0.89072 1.20274 1.07111 0.99150 0.85205 1.23097 0.93349 1.03540 1.00015 1.23099 0.97583 0.99147 1.00085 0.90957 0.91701 0.90009 0.88377 0.87801 0.92090 0.86476 0.90861 0.92558 0.78258 0.93537 0.93099 0.93818 0.90780 0.89333 0.91501 0.82433 0.86738 0.87929 0.88059 0.88028 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.16 0.38 -0.67 16 2 C 0.11 0.73 6.74 -4.04 -0.03 0.71 16 3 N -0.28 -2.94 3.30 -57.11 -0.19 -3.13 16 4 N -0.25 -3.40 8.46 33.42 0.28 -3.12 16 5 C 0.00 -0.06 6.83 -82.76 -0.56 -0.62 16 6 C 0.60 10.32 7.69 -12.39 -0.10 10.23 16 7 O -0.54 -10.51 16.36 5.30 0.09 -10.42 16 8 N -0.59 -9.75 2.97 -173.93 -0.52 -10.27 16 9 C 0.09 1.39 6.11 -3.71 -0.02 1.37 16 10 C -0.15 -2.75 5.66 -26.61 -0.15 -2.90 16 11 C 0.18 3.68 2.19 -67.89 -0.15 3.54 16 12 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 13 N -0.72 -17.91 4.41 -53.39 -0.24 -18.15 16 14 C -0.23 -6.44 9.93 -15.06 -0.15 -6.59 16 15 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 18 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C -0.11 -1.94 2.46 -90.50 -0.22 -2.17 16 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 24 C -0.14 -2.32 9.03 37.15 0.34 -1.99 16 25 C 0.12 1.93 5.73 -3.71 -0.02 1.91 16 26 C -0.18 -2.27 9.86 -39.37 -0.39 -2.65 16 27 C 0.05 0.48 6.60 -82.20 -0.54 -0.06 16 28 C -0.10 -0.66 5.94 -91.77 -0.55 -1.21 16 29 C -0.16 -0.94 10.05 -26.73 -0.27 -1.21 16 30 C -0.16 -0.97 10.05 -26.73 -0.27 -1.24 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.38 7.12 -51.93 -0.37 0.01 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.12 1.79 4.17 -69.85 -0.29 1.50 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.38 10.27 7.50 -40.81 -0.31 9.96 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.07 1.47 7.36 -51.93 -0.38 1.09 16 45 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 48 H 0.11 0.55 7.17 -51.93 -0.37 0.18 16 49 H 0.10 0.68 7.95 -51.93 -0.41 0.26 16 50 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.10 0.71 7.96 -51.93 -0.41 0.30 16 LS Contribution 414.37 15.07 6.24 6.24 Total: -1.00 -33.36 414.37 -10.22 -43.58 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.80 Total: 9.43 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.80 Total: -4.06 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.07 Total: -62.13 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.36 -10.22 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036067465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.611 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds