Wall clock time and date at job start Wed Apr 1 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47088 * 2 1 4 4 N 1.28471 * 124.88468 * 90.02713 * 3 2 1 5 5 C 1.31808 * 110.07404 * 179.97438 * 4 3 2 6 6 C 1.47714 * 126.51566 * 179.97438 * 5 4 3 7 7 O 1.21575 * 119.99545 * 173.24382 * 6 5 4 8 8 N 1.34769 * 119.99950 * 353.24045 * 6 5 4 9 9 C 1.46924 * 120.63265 * 353.04905 * 8 6 5 10 10 C 1.53196 * 108.77744 * 233.58743 * 9 8 6 11 11 C 1.53045 * 109.31260 * 305.36372 * 10 9 8 12 12 H 1.08996 * 109.45963 * 301.34647 * 11 10 9 13 13 N 1.46491 * 109.45896 * 181.38508 * 11 10 9 14 14 C 1.36935 * 120.00359 * 85.00380 * 13 11 10 15 15 H 1.08005 * 119.99499 * 359.97438 * 14 13 11 16 16 C 1.38807 * 120.00343 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00232 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47465 * 60.00151 * 18 16 14 20 20 H 1.48503 * 109.47085 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47357 * 300.00058 * 18 16 14 22 22 C 1.53048 * 109.53579 * 61.36776 * 11 10 9 23 23 H 1.09001 * 109.50032 * 58.58079 * 22 11 10 24 24 C 1.52991 * 109.49510 * 178.65084 * 22 11 10 25 25 C 1.46926 * 120.62856 * 173.03288 * 8 6 5 26 26 C 1.41498 * 106.96515 * 0.22876 * 5 4 3 27 27 C 1.35037 * 124.88898 * 270.02029 * 3 2 1 28 28 C 1.50707 * 126.38047 * 0.04321 * 27 3 2 29 29 C 1.53002 * 117.49433 * 213.61632 * 28 27 3 30 30 C 1.52999 * 59.99935 * 252.51193 * 29 28 27 31 31 H 1.09001 * 109.47043 * 300.00106 * 1 2 3 32 32 H 1.08999 * 109.47087 * 59.99594 * 1 2 3 33 33 H 1.08992 * 109.47142 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46855 * 240.00414 * 2 1 3 35 35 H 1.08999 * 109.47087 * 120.00406 * 2 1 3 36 36 H 1.09000 * 109.58421 * 113.80450 * 9 8 6 37 37 H 1.08997 * 109.59179 * 353.37583 * 9 8 6 38 38 H 1.08998 * 109.49471 * 185.41704 * 10 9 8 39 39 H 1.08992 * 109.50074 * 65.31661 * 10 9 8 40 40 H 0.97012 * 120.00370 * 264.99898 * 13 11 10 41 41 H 0.96996 * 119.99919 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47865 * 60.00454 * 24 22 11 43 43 H 1.09010 * 109.46936 * 179.97438 * 24 22 11 44 44 H 1.08997 * 109.47721 * 299.99440 * 24 22 11 45 45 H 1.09000 * 109.58948 * 6.61976 * 25 8 6 46 46 H 1.09005 * 109.70441 * 246.26700 * 25 8 6 47 47 H 1.07997 * 127.25006 * 179.74651 * 26 5 4 48 48 H 1.08999 * 115.55098 * 359.32407 * 28 27 3 49 49 H 1.09000 * 117.49652 * 0.02562 * 29 28 27 50 50 H 1.08997 * 117.49353 * 145.02003 * 29 28 27 51 51 H 1.09004 * 117.49754 * 252.51537 * 30 29 28 52 52 H 1.08995 * 117.49923 * 107.49088 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2638 2.0737 1.0539 5 6 2.6889 3.2750 0.7169 6 6 3.0734 4.3623 1.6400 7 8 3.5665 5.3842 1.2035 8 7 2.8775 4.2214 2.9659 9 6 2.1467 3.0620 3.4956 10 6 1.0076 3.5633 4.3890 11 6 1.5783 4.4913 5.4639 12 1 2.3199 3.9518 6.0530 13 7 0.4963 4.9464 6.3403 14 6 0.1039 4.1746 7.4012 15 1 0.5919 3.2300 7.5914 16 6 -0.9210 4.6061 8.2319 17 7 -1.5161 5.7569 7.9997 18 14 -1.4558 3.5534 9.6794 19 1 -0.3070 3.3566 10.5996 20 1 -2.5602 4.2322 10.4038 21 1 -1.9258 2.2342 9.1853 22 6 2.2380 5.7011 4.7979 23 1 1.5028 6.2270 4.1888 24 6 2.7786 6.6447 5.8741 25 6 3.3910 5.2240 3.9091 26 6 2.7013 3.3271 -0.6970 27 6 2.2755 2.1095 -1.1077 28 6 2.1128 1.6537 -2.5349 29 6 3.1020 2.1982 -3.5674 30 6 1.6541 2.6925 -3.5603 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.8236 2.4400 4.0812 37 1 1.7351 2.4812 2.6703 38 1 0.5176 2.7138 4.8647 39 1 0.2840 4.1093 3.7839 40 1 0.0578 5.7947 6.1693 41 1 -2.2320 6.0585 8.5805 42 1 3.5146 6.1189 6.4821 43 1 3.2487 7.5060 5.3992 44 1 1.9580 6.9816 6.5075 45 1 3.8005 6.0696 3.3566 46 1 4.1705 4.7805 4.5287 47 1 2.9910 4.1619 -1.3180 48 1 1.7623 0.6298 -2.6644 49 1 3.8706 2.8858 -3.2142 50 1 3.4025 1.5324 -4.3763 51 1 1.0020 2.3518 -4.3646 52 1 1.4698 3.7055 -3.2025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036067465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:54 Heat of formation + Delta-G solvation = 67.888714 kcal Electronic energy + Delta-G solvation = -31211.603016 eV Core-core repulsion = 27213.418774 eV Total energy + Delta-G solvation = -3998.184242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.83307 -41.10661 -38.98760 -38.12799 -36.21707 -35.60614 -34.43326 -33.08363 -31.46204 -31.18233 -30.87732 -27.88803 -26.87343 -25.46983 -24.68865 -24.23942 -23.21669 -23.08322 -22.81748 -21.40136 -20.91615 -20.00735 -19.04663 -18.29966 -17.85557 -17.09485 -16.92407 -16.75445 -16.11184 -15.94891 -15.72011 -15.50007 -15.42673 -15.24587 -14.96203 -14.80290 -14.47538 -14.32876 -14.01411 -13.67951 -13.47386 -13.26126 -13.07979 -12.96361 -12.83533 -12.77805 -12.76405 -12.46880 -12.38847 -12.29114 -12.20215 -12.15689 -11.99038 -11.86741 -11.76985 -11.54654 -11.34304 -11.18114 -11.11906 -10.74549 -10.17424 -9.73541 -9.66597 -8.96526 -7.90897 -5.18973 0.44797 0.98711 1.43349 1.47460 1.50264 1.56163 1.97337 2.28556 2.57855 3.04785 3.16204 3.41567 3.45320 3.62311 3.78330 3.84015 3.96404 4.00655 4.01152 4.04119 4.11429 4.13915 4.26908 4.34449 4.34721 4.37910 4.44495 4.52070 4.67074 4.72202 4.76562 4.77394 4.82460 4.83081 4.83701 4.87922 4.99319 5.02356 5.04345 5.15242 5.18614 5.23168 5.26594 5.28904 5.34559 5.42902 5.49324 5.54654 5.62828 5.90496 6.29173 6.31368 6.82148 7.09485 7.36236 8.11678 8.36308 9.32570 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.002656 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.563867 B =10540.047023 C =11918.526326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 N -0.271 5.271 4 N -0.265 5.265 5 C -0.036 4.036 6 C 0.597 3.403 7 O -0.574 6.574 8 N -0.595 5.595 9 C 0.100 3.900 10 C -0.137 4.137 11 C 0.181 3.819 12 H 0.049 0.951 13 N -0.731 5.731 14 C -0.232 4.232 15 H 0.077 0.923 16 C -0.078 4.078 17 N -0.972 5.972 18 Si 0.970 3.030 19 H -0.278 1.278 20 H -0.299 1.299 21 H -0.278 1.278 22 C -0.100 4.100 23 H 0.050 0.950 24 C -0.128 4.128 25 C 0.126 3.874 26 C -0.200 4.200 27 C 0.062 3.938 28 C -0.105 4.105 29 C -0.156 4.156 30 C -0.161 4.161 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.156 0.844 48 H 0.144 0.856 49 H 0.089 0.911 50 H 0.125 0.875 51 H 0.123 0.877 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.423 -14.845 -25.185 30.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.016 4.016 3 N -0.059 5.059 4 N -0.101 5.101 5 C -0.193 4.193 6 C 0.385 3.615 7 O -0.453 6.453 8 N -0.325 5.325 9 C -0.023 4.023 10 C -0.178 4.178 11 C 0.072 3.928 12 H 0.067 0.933 13 N -0.370 5.370 14 C -0.364 4.364 15 H 0.095 0.905 16 C -0.270 4.270 17 N -0.623 5.623 18 Si 0.800 3.200 19 H -0.204 1.204 20 H -0.226 1.226 21 H -0.204 1.204 22 C -0.120 4.120 23 H 0.068 0.932 24 C -0.186 4.186 25 C 0.003 3.997 26 C -0.228 4.228 27 C -0.063 4.063 28 C -0.124 4.124 29 C -0.193 4.193 30 C -0.198 4.198 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.152 0.848 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.174 0.826 48 H 0.162 0.838 49 H 0.107 0.893 50 H 0.143 0.857 51 H 0.141 0.859 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.406 -15.267 -24.304 30.203 hybrid contribution -0.791 0.877 0.686 1.366 sum 8.615 -14.390 -23.618 28.967 Atomic orbital electron populations 1.22170 0.92941 1.04944 1.02495 1.22462 0.96368 0.75326 1.07403 1.46092 1.44549 1.13343 1.01953 1.73334 1.18123 1.04830 1.13847 1.21680 1.10001 0.93235 0.94421 1.17327 0.77705 0.84991 0.81504 1.90716 1.47530 1.29845 1.77176 1.48032 1.54442 1.24959 1.05097 1.22457 0.93285 0.86858 0.99701 1.22451 0.97564 1.00244 0.97540 1.20410 0.89486 0.93017 0.89846 0.93273 1.42579 1.40333 1.23189 1.30870 1.19562 1.12714 1.00967 1.03114 0.90545 1.25520 1.00051 0.98753 1.02641 1.69825 1.28156 1.22741 1.41555 0.85255 0.77293 0.77943 0.79543 1.20405 1.22569 1.20447 1.21602 0.96999 0.96816 0.96558 0.93181 1.21564 1.00689 0.98656 0.97672 1.21699 0.95505 0.92043 0.90449 1.21462 1.09548 0.99107 0.92699 1.20827 1.03426 0.91397 0.90612 1.20505 1.08280 1.00681 0.82964 1.23167 0.92847 1.03388 0.99942 1.23159 0.98307 0.98214 1.00162 0.93763 0.91660 0.87335 0.84773 0.87151 0.90548 0.85573 0.91686 0.94547 0.79816 0.94245 0.92101 0.91510 0.93950 0.89381 0.89462 0.82625 0.83832 0.89258 0.85693 0.85881 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 71.98 0.74 -0.90 16 2 C 0.10 1.01 6.74 86.38 0.58 1.59 16 3 N -0.27 -5.22 3.30 -334.58 -1.10 -6.32 16 4 N -0.27 -6.96 8.46 -48.18 -0.41 -7.37 16 5 C -0.04 -1.08 6.83 42.46 0.29 -0.79 16 6 C 0.60 20.89 7.69 86.75 0.67 21.55 16 7 O -0.57 -22.80 16.36 -3.95 -0.06 -22.86 16 8 N -0.59 -19.58 2.97 -822.45 -2.44 -22.02 16 9 C 0.10 3.12 6.11 86.36 0.53 3.65 16 10 C -0.14 -5.13 5.66 30.67 0.17 -4.96 16 11 C 0.18 7.34 2.19 45.02 0.10 7.43 16 12 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 13 N -0.73 -37.21 4.41 -322.82 -1.42 -38.63 16 14 C -0.23 -12.81 9.93 84.03 0.83 -11.97 16 15 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 16 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 17 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 18 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.10 -3.59 2.46 -10.72 -0.03 -3.61 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 C -0.13 -4.39 9.03 71.98 0.65 -3.75 16 25 C 0.13 3.98 5.73 86.36 0.49 4.47 16 26 C -0.20 -5.09 9.86 22.41 0.22 -4.87 16 27 C 0.06 1.17 6.60 41.40 0.27 1.45 16 28 C -0.10 -1.10 5.94 -11.54 -0.07 -1.17 16 29 C -0.16 -1.40 10.05 30.59 0.31 -1.09 16 30 C -0.16 -1.55 10.05 30.59 0.31 -1.24 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.13 0.40 7.12 -2.39 -0.02 0.38 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.13 3.81 4.17 -25.57 -0.11 3.71 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.37 20.66 7.50 -92.70 -0.70 19.97 16 41 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.04 1.72 7.36 -2.39 -0.02 1.70 16 45 H 0.09 2.85 7.00 -2.39 -0.02 2.83 16 46 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 48 H 0.14 0.69 7.17 -2.39 -0.02 0.67 16 49 H 0.09 1.06 7.95 -2.39 -0.02 1.05 16 50 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 52 H 0.09 1.14 7.96 -2.39 -0.02 1.12 16 Total: -1.00 -74.67 414.37 3.53 -71.14 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.12 Total: 35.87 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.54 Total: 1.78 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -5.09 Total: -134.35 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.67 3.53 -71.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036067465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.032 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds