Wall clock time and date at job start Wed Apr 1 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47004 * 2 1 4 4 N 1.39935 * 125.75758 * 265.28253 * 3 2 1 5 5 C 1.30447 * 108.89948 * 179.73080 * 4 3 2 6 6 C 1.41290 * 108.02097 * 0.38818 * 5 4 3 7 7 C 1.47426 * 126.41375 * 179.87822 * 6 5 4 8 8 O 1.21603 * 120.00336 * 124.60700 * 7 6 5 9 9 N 1.34783 * 119.99895 * 304.89048 * 7 6 5 10 10 C 1.46924 * 120.62819 * 4.73835 * 9 7 6 11 11 C 1.53633 * 108.53978 * 126.37380 * 10 9 7 12 12 C 1.53046 * 109.24129 * 54.85541 * 11 10 9 13 13 H 1.08994 * 109.44940 * 58.52436 * 12 11 10 14 14 N 1.46497 * 109.45615 * 178.49285 * 12 11 10 15 15 C 1.36939 * 119.99619 * 275.06216 * 14 12 11 16 16 H 1.07996 * 120.00265 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99458 * 180.02562 * 15 14 12 18 18 N 1.31613 * 120.00501 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99506 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47371 * 60.00007 * 19 17 15 21 21 H 1.48499 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47111 * 299.99691 * 19 17 15 23 23 C 1.53039 * 109.53711 * 298.51020 * 12 11 10 24 24 H 1.09004 * 109.52890 * 301.39929 * 23 12 11 25 25 C 1.52998 * 109.49915 * 181.31838 * 23 12 11 26 26 C 1.46926 * 120.62862 * 185.02682 * 9 7 6 27 27 C 1.34261 * 125.75321 * 85.26530 * 3 2 1 28 28 C 1.50705 * 126.29135 * 0.02562 * 27 3 2 29 29 C 1.53000 * 117.49456 * 130.17027 * 28 27 3 30 30 C 1.52998 * 117.49246 * 61.55073 * 28 27 3 31 31 H 1.08999 * 109.47185 * 184.95931 * 1 2 3 32 32 H 1.09003 * 109.47569 * 304.95773 * 1 2 3 33 33 H 1.09007 * 109.47360 * 64.96066 * 1 2 3 34 34 H 1.09000 * 109.47058 * 240.00263 * 2 1 3 35 35 H 1.09002 * 109.47145 * 119.99955 * 2 1 3 36 36 H 1.08004 * 125.98705 * 180.22975 * 5 4 3 37 37 H 1.09003 * 109.58559 * 246.20216 * 10 9 7 38 38 H 1.08991 * 109.58911 * 6.63498 * 10 9 7 39 39 H 1.08994 * 109.63179 * 294.86542 * 11 10 9 40 40 H 1.08993 * 109.45786 * 174.74002 * 11 10 9 41 41 H 0.97000 * 120.00510 * 95.07308 * 14 12 11 42 42 H 0.97005 * 120.00404 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47011 * 300.16276 * 25 23 12 44 44 H 1.08999 * 109.46997 * 60.15783 * 25 23 12 45 45 H 1.09000 * 109.47322 * 180.16289 * 25 23 12 46 46 H 1.09003 * 109.58647 * 353.36683 * 26 9 7 47 47 H 1.08997 * 109.58809 * 113.65161 * 26 9 7 48 48 H 1.08996 * 115.54952 * 275.87748 * 28 27 3 49 49 H 1.09000 * 117.49886 * 0.02562 * 29 28 27 50 50 H 1.08996 * 117.49923 * 145.02703 * 29 28 27 51 51 H 1.09000 * 117.49530 * 214.97188 * 30 28 27 52 52 H 1.08999 * 117.50552 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.3789 2.1211 -1.1317 5 6 2.7602 3.3104 -0.7552 6 6 2.6650 3.3745 0.6530 7 6 2.9992 4.5333 1.5009 8 8 2.1712 4.9832 2.2696 9 7 4.2205 5.0977 1.4200 10 6 5.1934 4.6366 0.4203 11 6 5.6738 5.8503 -0.3899 12 6 6.2140 6.9144 0.5683 13 1 7.0301 6.4934 1.1555 14 7 6.7066 8.0593 -0.2015 15 6 7.9809 8.0499 -0.7029 16 1 8.6226 7.1984 -0.5311 17 6 8.4479 9.1351 -1.4319 18 7 7.6661 10.1731 -1.6408 19 14 10.1859 9.1220 -2.1164 20 1 10.3444 7.9724 -3.0428 21 1 10.4385 10.3881 -2.8501 22 1 11.1567 8.9954 -0.9998 23 6 5.0953 7.3740 1.5061 24 1 4.2682 7.7726 0.9187 25 6 5.6277 8.4612 2.4418 26 6 4.6063 6.1813 2.3341 27 6 2.1949 2.1508 1.0859 28 6 1.9290 1.7521 2.5147 29 6 3.0353 2.0137 3.5386 30 6 2.7365 0.5838 3.0838 31 1 -0.3633 -1.0238 0.0888 32 1 -0.3634 0.5888 0.8422 33 1 -0.3634 0.4350 -0.9311 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0930 4.1057 -1.4057 37 1 6.0409 4.1706 0.9230 38 1 4.7193 3.9156 -0.2456 39 1 4.8414 6.2629 -0.9598 40 1 6.4647 5.5408 -1.0731 41 1 6.1303 8.8241 -0.3560 42 1 7.9923 10.9312 -2.1505 43 1 6.4555 8.0625 3.0282 44 1 5.9755 9.3095 1.8523 45 1 4.8313 8.7861 3.1114 46 1 3.7447 6.4798 2.9313 47 1 5.4052 5.8380 2.9913 48 1 0.8973 1.8611 2.8489 49 1 3.9553 2.4747 3.1789 50 1 2.7316 2.2950 4.5469 51 1 2.2361 -0.0756 3.7930 52 1 3.4596 0.1033 2.4249 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036263757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:12 Heat of formation + Delta-G solvation = 77.854453 kcal Electronic energy + Delta-G solvation = -31615.718090 eV Core-core repulsion = 27617.965995 eV Total energy + Delta-G solvation = -3997.752095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76840 -39.61398 -37.52383 -37.25673 -34.86360 -34.42573 -32.78588 -31.40380 -30.47267 -29.94510 -29.19624 -26.51590 -25.15324 -24.35103 -23.47060 -22.93559 -22.72590 -21.64594 -21.49710 -20.40112 -19.44465 -18.75841 -17.34647 -17.01050 -16.69117 -15.84626 -15.77502 -15.12398 -14.95095 -14.87914 -14.69608 -14.43643 -14.05103 -13.87271 -13.64489 -13.53687 -13.22685 -13.01136 -12.75427 -12.50990 -12.40830 -12.21167 -12.08438 -11.94897 -11.76657 -11.64040 -11.49858 -11.30508 -11.12962 -10.97038 -10.89943 -10.76473 -10.57670 -10.54805 -10.34811 -10.20804 -9.72874 -9.67383 -9.57745 -9.51529 -8.88575 -8.66202 -8.31189 -6.93559 -5.75179 -3.03574 1.47079 2.09788 2.23110 3.01460 3.34356 3.35880 3.44122 3.48929 3.49766 4.02187 4.17889 4.45478 4.52522 4.55674 4.59580 4.69630 4.75198 4.88636 4.94555 5.14373 5.19930 5.21851 5.24652 5.31339 5.35517 5.44148 5.45744 5.53855 5.58146 5.60308 5.63267 5.70044 5.72842 5.76681 5.78151 5.86331 6.04330 6.14230 6.21426 6.30265 6.36676 6.45858 6.48979 6.61583 6.67031 6.72792 6.87071 6.98504 7.11040 7.44598 7.65754 7.70320 8.41546 8.43228 9.54491 10.12696 10.47529 11.47272 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.002648 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.242295 B =10570.411274 C =11406.791517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.356 5.356 4 N -0.294 5.294 5 C 0.082 3.918 6 C -0.273 4.273 7 C 0.598 3.402 8 O -0.545 6.545 9 N -0.600 5.600 10 C 0.104 3.896 11 C -0.151 4.151 12 C 0.185 3.815 13 H 0.047 0.953 14 N -0.721 5.721 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.110 4.110 24 H 0.070 0.930 25 C -0.136 4.136 26 C 0.122 3.878 27 C 0.165 3.835 28 C -0.102 4.102 29 C -0.145 4.145 30 C -0.175 4.175 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.192 0.808 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.128 0.872 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.104 0.896 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 -22.268 8.966 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.136 5.136 4 N -0.113 5.113 5 C -0.105 4.105 6 C -0.288 4.288 7 C 0.385 3.615 8 O -0.423 6.423 9 N -0.332 5.332 10 C -0.019 4.019 11 C -0.192 4.192 12 C 0.074 3.926 13 H 0.065 0.935 14 N -0.361 5.361 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.130 4.130 24 H 0.088 0.912 25 C -0.194 4.194 26 C 0.000 4.000 27 C 0.034 3.966 28 C -0.122 4.122 29 C -0.183 4.183 30 C -0.212 4.212 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.209 0.791 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.146 0.854 49 H 0.116 0.884 50 H 0.124 0.876 51 H 0.122 0.878 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.326 -22.966 8.284 27.815 hybrid contribution 0.966 0.868 -0.151 1.307 sum -12.361 -22.098 8.132 26.594 Atomic orbital electron populations 1.22185 0.94025 1.03143 1.03479 1.21770 0.95450 0.77694 1.04666 1.48456 1.49723 1.12019 1.03357 1.77206 1.21506 1.05295 1.07298 1.24028 0.97581 0.95246 0.93610 1.19930 1.18530 0.96263 0.94089 1.17246 0.81273 0.81531 0.81445 1.90735 1.47781 1.63418 1.40331 1.48013 1.13650 1.36266 1.35316 1.22041 0.91571 0.97654 0.90635 1.22762 1.01185 0.95762 0.99504 1.20183 0.93004 0.88650 0.90720 0.93529 1.42406 1.13767 1.17273 1.62633 1.19165 0.89849 1.01308 1.26497 0.91336 1.24718 0.98058 0.96743 1.01359 1.69645 1.35741 1.07417 1.45271 0.86311 0.84701 0.76673 0.78750 1.21353 1.21784 1.21354 1.21738 0.99047 0.94926 0.97259 0.91205 1.21657 0.99722 0.99237 0.98745 1.21686 1.00316 0.86405 0.91642 1.20306 0.96797 0.90491 0.89024 1.20456 0.98911 1.04919 0.87928 1.22939 0.98932 0.97585 0.98836 1.23093 1.02816 0.91717 1.03550 0.90339 0.91806 0.91544 0.88353 0.88732 0.79124 0.91918 0.90057 0.92158 0.90702 0.78219 0.93499 0.93128 0.90812 0.93851 0.89379 0.91744 0.85446 0.88366 0.87625 0.87779 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.24 37.15 0.38 -0.61 16 2 C 0.13 0.84 6.88 -4.04 -0.03 0.82 16 3 N -0.36 -3.81 3.58 -56.60 -0.20 -4.02 16 4 N -0.29 -3.80 12.50 30.86 0.39 -3.41 16 5 C 0.08 1.07 9.77 -16.98 -0.17 0.90 16 6 C -0.27 -3.72 5.07 -105.07 -0.53 -4.25 16 7 C 0.60 9.17 6.48 -12.52 -0.08 9.09 16 8 O -0.54 -9.84 16.52 5.28 0.09 -9.75 16 9 N -0.60 -8.71 2.97 -173.76 -0.52 -9.23 16 10 C 0.10 1.43 6.28 -3.48 -0.02 1.41 16 11 C -0.15 -2.53 5.67 -26.38 -0.15 -2.68 16 12 C 0.18 3.49 2.19 -67.89 -0.15 3.34 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 14 N -0.72 -17.26 4.41 -53.39 -0.24 -17.50 16 15 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 19 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 C -0.11 -1.82 2.46 -90.50 -0.22 -2.05 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 25 C -0.14 -2.22 9.02 37.16 0.34 -1.89 16 26 C 0.12 1.79 5.72 -3.71 -0.02 1.77 16 27 C 0.16 1.91 6.44 -81.60 -0.53 1.38 16 28 C -0.10 -0.94 5.66 -91.77 -0.52 -1.46 16 29 C -0.15 -1.29 9.59 -26.73 -0.26 -1.55 16 30 C -0.17 -1.15 9.07 -26.73 -0.24 -1.39 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.46 6.59 -51.93 -0.34 0.12 16 36 H 0.19 2.24 7.75 -52.48 -0.41 1.83 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.03 4.34 -51.93 -0.23 0.81 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.38 9.96 7.50 -40.82 -0.31 9.66 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.42 7.36 -51.93 -0.38 1.03 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.10 1.03 7.88 -51.93 -0.41 0.62 16 50 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 LS Contribution 414.44 15.07 6.25 6.25 Total: -1.00 -32.64 414.44 -9.71 -42.35 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.73 Total: 9.37 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.45 Total: -4.12 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.16 Total: -61.17 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.64 -9.71 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036263757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.203 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds