Wall clock time and date at job start Wed Apr 1 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.46572 * 2 1 4 4 C 1.35410 * 126.43605 * 264.96910 * 3 2 1 5 5 C 1.35567 * 107.15890 * 180.02562 * 4 3 2 6 6 N 1.33101 * 108.35014 * 359.73765 * 5 4 3 7 7 C 1.31617 * 109.09469 * 0.43673 * 6 5 4 8 8 C 1.47408 * 125.86544 * 179.82856 * 7 6 5 9 9 O 1.21606 * 120.00246 * 184.98345 * 8 7 6 10 10 N 1.34786 * 119.99753 * 4.98894 * 8 7 6 11 11 C 1.46921 * 120.62914 * 353.89372 * 10 8 7 12 12 C 1.53189 * 108.89355 * 126.29883 * 11 10 8 13 13 C 1.53351 * 109.14698 * 54.57856 * 12 11 10 14 14 C 1.53043 * 109.60565 * 298.70735 * 13 12 11 15 15 C 1.46921 * 120.62585 * 173.86977 * 10 8 7 16 16 H 1.09003 * 109.58787 * 113.84532 * 15 10 8 17 17 C 1.52994 * 109.59301 * 353.56069 * 15 10 8 18 18 H 1.09000 * 110.88600 * 55.93847 * 17 15 10 19 19 C 1.55156 * 111.00356 * 292.01756 * 17 15 10 20 20 C 1.54325 * 102.94324 * 206.42270 * 19 17 15 21 21 N 1.47017 * 107.26882 * 22.19278 * 20 19 17 22 22 C 1.36939 * 125.64334 * 181.02428 * 21 20 19 23 23 H 1.08003 * 119.99949 * 180.02562 * 22 21 20 24 24 C 1.38809 * 120.00547 * 0.04052 * 22 21 20 25 25 N 1.31628 * 119.99715 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00477 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47326 * 59.99694 * 26 24 22 28 28 H 1.48502 * 109.47303 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47108 * 299.99835 * 26 24 22 30 30 C 1.47420 * 108.70539 * 1.06095 * 21 20 19 31 31 H 1.08999 * 109.47058 * 300.00180 * 1 2 3 32 32 H 1.08997 * 109.47242 * 60.00465 * 1 2 3 33 33 H 1.09005 * 109.47086 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47058 * 239.99820 * 2 1 3 35 35 H 1.08998 * 109.46503 * 119.99525 * 2 1 3 36 36 H 1.07995 * 126.41770 * 0.06327 * 4 3 2 37 37 H 1.07997 * 125.82577 * 179.97438 * 5 4 3 38 38 H 1.09007 * 109.58404 * 246.15667 * 11 10 8 39 39 H 1.09003 * 109.58788 * 6.43781 * 11 10 8 40 40 H 1.09003 * 109.50009 * 174.65187 * 12 11 10 41 41 H 1.08992 * 109.50108 * 294.75435 * 12 11 10 42 42 H 1.09000 * 109.42067 * 178.67639 * 13 12 11 43 43 H 1.09001 * 109.42579 * 58.74900 * 13 12 11 44 44 H 1.08999 * 109.50098 * 301.42828 * 14 13 12 45 45 H 1.09001 * 109.52396 * 181.34187 * 14 13 12 46 46 H 1.09001 * 110.72165 * 324.78881 * 19 17 15 47 47 H 1.09000 * 110.72359 * 88.05964 * 19 17 15 48 48 H 1.08998 * 109.87948 * 262.77263 * 20 19 17 49 49 H 1.08998 * 110.01003 * 141.68467 * 20 19 17 50 50 H 0.96994 * 119.99690 * 180.02562 * 25 24 22 51 51 H 1.09006 * 110.36583 * 217.03340 * 30 21 20 52 52 H 1.08997 * 110.36699 * 94.70913 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3763 2.1076 -1.0852 5 6 2.7663 3.3271 -0.6393 6 7 2.6440 3.3475 0.6859 7 6 2.1985 2.1786 1.0952 8 6 1.9333 1.7971 2.4942 9 8 1.6082 0.6563 2.7622 10 7 2.0511 2.7127 3.4763 11 6 2.5704 4.0565 3.1884 12 6 1.5679 5.0958 3.6999 13 6 1.2839 4.8330 5.1837 14 6 0.6687 3.4416 5.3503 15 6 1.6621 2.3858 4.8548 16 1 2.5452 2.3868 5.4937 17 6 1.0061 1.0041 4.8889 18 1 1.6672 0.2494 4.4627 19 6 -0.3634 1.0205 4.1599 20 6 -1.1347 -0.1258 4.8473 21 7 -0.5122 -0.3443 6.1612 22 6 -0.8907 -1.2903 7.0761 23 1 -0.3675 -1.3708 8.0175 24 6 -1.9466 -2.1459 6.7937 25 7 -2.5837 -2.0484 5.6460 26 14 -2.4633 -3.4358 8.0421 27 1 -2.8706 -2.7679 9.3043 28 1 -3.6060 -4.2163 7.5034 29 1 -1.3236 -4.3491 8.3109 30 6 0.5863 0.6241 6.3308 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.3547 1.7776 -2.1133 37 1 3.1131 4.1440 -1.2547 38 1 3.5277 4.1938 3.6914 39 1 2.7025 4.1746 2.1129 40 1 1.9855 6.0952 3.5774 41 1 0.6405 5.0165 3.1328 42 1 0.5889 5.5844 5.5584 43 1 2.2158 4.8877 5.7464 44 1 -0.2503 3.3780 4.7677 45 1 0.4454 3.2655 6.4025 46 1 -0.8706 1.9730 4.3133 47 1 -0.2368 0.8168 3.0966 48 1 -1.0627 -1.0330 4.2474 49 1 -2.1809 0.1522 4.9744 50 1 -3.3218 -2.6460 5.4488 51 1 1.4204 0.1628 6.8596 52 1 0.2357 1.5050 6.8684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039221474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:40 Heat of formation + Delta-G solvation = 96.613415 kcal Electronic energy + Delta-G solvation = -33138.836251 eV Core-core repulsion = 29141.897605 eV Total energy + Delta-G solvation = -3996.938646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49867 -40.37894 -37.38774 -36.74932 -35.16020 -33.09197 -32.64823 -31.04704 -30.35269 -29.58213 -28.72030 -27.32775 -25.38348 -24.28543 -23.97016 -23.33619 -22.35167 -21.53393 -20.66930 -19.85893 -19.57022 -18.52303 -17.26630 -16.80576 -16.08372 -15.90631 -15.52975 -15.06852 -14.87080 -14.71031 -14.45508 -14.40677 -14.04793 -13.90671 -13.77977 -13.61394 -13.25496 -12.97916 -12.79522 -12.70664 -12.20988 -12.14051 -12.04320 -11.72866 -11.57072 -11.43661 -11.13785 -11.01183 -10.86972 -10.73003 -10.58235 -10.49716 -10.04351 -9.98295 -9.94125 -9.71598 -9.57076 -9.48510 -9.32078 -8.79858 -8.62289 -8.42683 -8.22112 -6.63573 -5.56908 -2.88954 1.34136 2.32549 2.51815 3.21423 3.44480 3.47580 3.51216 3.52698 4.18563 4.51268 4.54331 4.61629 4.90734 4.93683 5.00261 5.04757 5.11048 5.18433 5.24616 5.27425 5.43433 5.49389 5.56017 5.59712 5.62348 5.65051 5.78808 5.87662 5.90058 5.99520 6.05015 6.07732 6.11953 6.14965 6.19162 6.26037 6.27462 6.36552 6.49306 6.62439 6.66421 6.73533 6.82443 6.95545 7.01324 7.08212 7.37105 7.52299 7.71202 7.72085 7.88518 8.01445 8.33427 8.42835 9.37542 9.98711 10.67324 11.54336 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003763 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.972325 B = 7438.986623 C = 9159.652189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.409 5.409 4 C -0.035 4.035 5 C -0.034 4.034 6 N -0.450 5.450 7 C 0.157 3.843 8 C 0.592 3.408 9 O -0.505 6.505 10 N -0.579 5.579 11 C 0.053 3.947 12 C -0.128 4.128 13 C -0.122 4.122 14 C -0.137 4.137 15 C 0.161 3.839 16 H 0.071 0.929 17 C -0.103 4.103 18 H 0.114 0.886 19 C -0.136 4.136 20 C 0.185 3.815 21 N -0.603 5.603 22 C -0.223 4.223 23 H 0.075 0.925 24 C -0.010 4.010 25 N -0.922 5.922 26 Si 0.909 3.091 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.135 3.865 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.057 0.943 39 H 0.161 0.839 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.033 0.967 50 H 0.250 0.750 51 H 0.032 0.968 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 13.514 -14.579 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.089 5.089 4 C -0.173 4.173 5 C -0.185 4.185 6 N -0.172 5.172 7 C -0.103 4.103 8 C 0.378 3.622 9 O -0.380 6.380 10 N -0.310 5.310 11 C -0.069 4.069 12 C -0.166 4.166 13 C -0.159 4.159 14 C -0.175 4.175 15 C 0.059 3.941 16 H 0.089 0.911 17 C -0.122 4.122 18 H 0.132 0.868 19 C -0.174 4.174 20 C 0.060 3.940 21 N -0.329 5.329 22 C -0.352 4.352 23 H 0.093 0.907 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.740 3.260 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.008 3.992 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.197 0.803 37 H 0.193 0.807 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.051 0.949 50 H 0.060 0.940 51 H 0.050 0.950 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 11.292 13.157 -13.849 22.191 hybrid contribution -0.554 -1.164 0.084 1.292 sum 10.737 11.994 -13.765 21.180 Atomic orbital electron populations 1.22087 0.93098 1.03959 1.02989 1.22224 0.96673 0.78328 1.05585 1.45304 1.44513 1.13047 1.06002 1.22866 1.07165 0.94107 0.93164 1.22489 1.07212 0.97471 0.91376 1.69507 1.17701 1.18244 1.11708 1.23021 1.08680 0.87913 0.90667 1.16614 0.78677 0.85348 0.81607 1.90874 1.46668 1.19255 1.81218 1.47695 1.62594 1.13065 1.07695 1.23153 0.95279 0.79985 1.08517 1.21895 0.99950 0.98583 0.96218 1.21632 1.00708 0.97191 0.96398 1.22149 0.99261 0.93564 1.02479 1.21280 0.96876 0.95779 0.80201 0.91149 1.22970 0.97974 0.94392 0.96848 0.86850 1.23232 0.95124 0.99207 0.99848 1.21037 0.94000 0.93746 0.85229 1.44432 1.34855 1.36929 1.16692 1.19027 1.11906 1.07956 0.96318 0.90748 1.24770 0.98726 0.99755 0.97369 1.69996 1.24385 1.40296 1.22322 0.86240 0.77798 0.81521 0.80451 1.21323 1.21719 1.21315 1.21706 0.91086 0.92537 0.93860 0.90964 0.92556 0.89942 0.89133 0.86654 0.80312 0.80732 0.92485 0.82352 0.91284 0.91937 0.92135 0.92176 0.90591 0.90126 0.93500 0.91281 0.94076 0.94900 0.94004 0.95017 0.96692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.09 0.97 6.24 -4.04 -0.03 0.95 16 3 N -0.41 -4.69 2.76 -114.58 -0.32 -5.00 16 4 C -0.03 -0.31 11.53 -16.93 -0.20 -0.51 16 5 C -0.03 -0.33 11.85 -17.96 -0.21 -0.54 16 6 N -0.45 -5.56 7.51 -11.26 -0.08 -5.65 16 7 C 0.16 2.15 7.58 -154.52 -1.17 0.98 16 8 C 0.59 9.24 6.88 -12.52 -0.09 9.15 16 9 O -0.50 -8.98 8.37 5.27 0.04 -8.93 16 10 N -0.58 -8.37 2.96 -166.49 -0.49 -8.86 16 11 C 0.05 0.64 6.32 -3.71 -0.02 0.62 16 12 C -0.13 -1.40 6.11 -26.45 -0.16 -1.57 16 13 C -0.12 -1.38 5.89 -26.53 -0.16 -1.54 16 14 C -0.14 -1.94 4.73 -26.61 -0.13 -2.07 16 15 C 0.16 2.48 2.80 -67.60 -0.19 2.29 16 16 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 17 C -0.10 -1.98 2.12 -88.48 -0.19 -2.16 16 18 H 0.11 2.42 5.78 -52.71 -0.30 2.12 16 19 C -0.14 -2.83 5.33 -24.90 -0.13 -2.97 16 20 C 0.18 4.83 5.38 -3.07 -0.02 4.81 16 21 N -0.60 -16.38 3.39 -170.08 -0.58 -16.96 16 22 C -0.22 -6.55 10.28 -15.06 -0.15 -6.71 16 23 H 0.07 2.10 7.83 -52.48 -0.41 1.69 16 24 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -28.25 10.31 55.49 0.57 -27.68 16 26 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 C 0.13 2.98 6.61 -2.53 -0.02 2.96 16 31 H 0.07 1.02 7.50 -51.93 -0.39 0.63 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.12 1.45 6.53 -51.93 -0.34 1.11 16 36 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.16 1.96 3.64 -82.38 -0.30 1.66 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.20 5.69 -51.93 -0.30 0.91 16 45 H 0.08 1.19 6.48 -51.93 -0.34 0.85 16 46 H 0.05 0.94 5.42 -51.93 -0.28 0.66 16 47 H 0.07 1.42 5.02 -51.93 -0.26 1.16 16 48 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 49 H 0.03 0.95 7.50 -51.93 -0.39 0.56 16 50 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.02 0.33 6.06 -51.93 -0.31 0.01 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -33.69 382.22 -10.90 -44.59 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.21 Total: 2.95 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.57 Total: 1.87 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.90 Total: -64.15 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.04 Total: -8.93 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.69 -10.90 -44.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039221474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.202 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds