Wall clock time and date at job start Wed Apr 1 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47302 * 2 1 4 4 N 1.28439 * 125.19029 * 262.95459 * 3 2 1 5 5 C 1.30868 * 110.92532 * 179.97438 * 4 3 2 6 6 C 1.39670 * 107.86166 * 359.77704 * 5 4 3 7 7 C 1.36600 * 125.18680 * 82.93528 * 3 2 1 8 8 C 1.47167 * 126.88964 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99489 * 28.46226 * 8 7 3 10 10 N 1.34773 * 119.99979 * 208.46567 * 8 7 3 11 11 C 1.46927 * 120.63489 * 9.19574 * 10 8 7 12 12 C 1.53189 * 108.77851 * 126.41089 * 11 10 8 13 13 C 1.53040 * 109.31216 * 54.63707 * 12 11 10 14 14 C 1.53039 * 109.53597 * 298.63423 * 13 12 11 15 15 C 1.46926 * 120.62903 * 189.21592 * 10 8 7 16 16 H 1.09001 * 109.58520 * 113.65774 * 15 10 8 17 17 C 1.52998 * 109.58513 * 353.37288 * 15 10 8 18 18 H 1.08997 * 110.88848 * 312.58974 * 17 15 10 19 19 C 1.55158 * 111.00368 * 76.51617 * 17 15 10 20 20 C 1.54321 * 102.94284 * 153.57360 * 19 17 15 21 21 N 1.47011 * 107.27538 * 337.80684 * 20 19 17 22 22 C 1.36942 * 125.65328 * 179.20709 * 21 20 19 23 23 H 1.07999 * 119.99734 * 175.42684 * 22 21 20 24 24 C 1.38810 * 119.99722 * 355.42547 * 22 21 20 25 25 N 1.31623 * 119.99783 * 8.57536 * 24 22 21 26 26 Si 1.86800 * 120.00011 * 188.56793 * 24 22 21 27 27 H 1.48500 * 109.46939 * 94.89579 * 26 24 22 28 28 H 1.48497 * 109.47348 * 214.89869 * 26 24 22 29 29 H 1.48498 * 109.47015 * 334.89880 * 26 24 22 30 30 C 1.47427 * 108.69973 * 358.93882 * 21 20 19 31 31 H 1.09003 * 109.46670 * 64.43389 * 1 2 3 32 32 H 1.08993 * 109.47409 * 184.43330 * 1 2 3 33 33 H 1.08998 * 109.46995 * 304.44042 * 1 2 3 34 34 H 1.09001 * 109.47315 * 239.99800 * 2 1 3 35 35 H 1.09005 * 109.46918 * 119.99681 * 2 1 3 36 36 H 1.08003 * 126.06804 * 180.02562 * 5 4 3 37 37 H 1.08007 * 127.32148 * 180.27003 * 6 5 4 38 38 H 1.09000 * 109.58484 * 246.20195 * 11 10 8 39 39 H 1.09009 * 109.58362 * 6.47912 * 11 10 8 40 40 H 1.09000 * 109.49960 * 174.58795 * 12 11 10 41 41 H 1.09003 * 109.49344 * 294.65306 * 12 11 10 42 42 H 1.08995 * 109.46291 * 58.65135 * 13 12 11 43 43 H 1.08999 * 109.46260 * 178.63280 * 13 12 11 44 44 H 1.09002 * 109.50262 * 301.41157 * 14 13 12 45 45 H 1.09004 * 109.49661 * 181.31737 * 14 13 12 46 46 H 1.09004 * 110.71609 * 271.93856 * 19 17 15 47 47 H 1.08997 * 110.71890 * 35.03151 * 19 17 15 48 48 H 1.09003 * 109.88345 * 218.38253 * 20 19 17 49 49 H 1.09010 * 109.88187 * 97.22601 * 20 19 17 50 50 H 0.96998 * 119.99328 * 179.97438 * 25 24 22 51 51 H 1.09004 * 110.36648 * 142.96802 * 30 21 20 52 52 H 1.08999 * 110.37125 * 265.29037 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3865 2.0361 -1.0417 5 6 2.7716 3.2453 -0.7218 6 6 2.6344 3.3867 0.6610 7 6 2.1514 2.1691 1.1079 8 6 1.8375 1.7997 2.4975 9 8 1.9166 0.6384 2.8506 10 7 1.4625 2.7480 3.3786 11 6 1.1677 4.1148 2.9272 12 6 -0.2256 4.5094 3.4268 13 6 -0.2915 4.3207 4.9441 14 6 -0.0542 2.8483 5.2875 15 6 1.3411 2.4349 4.8089 16 1 2.0990 2.9831 5.3686 17 6 1.5323 0.9321 5.0230 18 1 0.9348 0.3594 4.3138 19 6 3.0315 0.5434 4.9298 20 6 3.1136 -0.7284 5.7999 21 7 1.9679 -0.7022 6.7207 22 6 1.6690 -1.6620 7.6506 23 1 0.8442 -1.5152 8.3322 24 6 2.4260 -2.8236 7.7169 25 7 3.5288 -2.9319 7.0066 26 14 1.8798 -4.2330 8.8145 27 1 1.0966 -5.2085 8.0143 28 1 3.0733 -4.9066 9.3861 29 1 1.0350 -3.7043 9.9154 30 6 1.1976 0.5319 6.4816 31 1 -0.3633 0.4435 -0.9271 32 1 -0.3634 -1.0245 0.0794 33 1 -0.3633 0.5812 0.8475 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8901 36 1 3.1279 4.0011 -1.4060 37 1 2.8589 4.2601 1.2553 38 1 1.9098 4.8019 3.3337 39 1 1.1921 4.1531 1.8380 40 1 -0.4179 5.5539 3.1814 41 1 -0.9755 3.8793 2.9484 42 1 0.4750 4.9325 5.4197 43 1 -1.2741 4.6238 5.3055 44 1 -0.8057 2.2335 4.7921 45 1 -0.1244 2.7105 6.3665 46 1 3.3096 0.3240 3.8989 47 1 3.6610 1.3343 5.3376 48 1 4.0448 -0.7304 6.3666 49 1 3.0606 -1.6146 5.1672 50 1 4.0580 -3.7435 7.0533 51 1 0.1299 0.3389 6.5864 52 1 1.5119 1.3150 7.1714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039222453.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:30 Heat of formation + Delta-G solvation = 103.653117 kcal Electronic energy + Delta-G solvation = -32859.815267 eV Core-core repulsion = 28863.181885 eV Total energy + Delta-G solvation = -3996.633381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.68417 -40.50301 -37.43031 -36.89738 -34.69440 -33.35317 -32.86444 -31.30907 -30.41223 -29.88132 -28.96605 -27.25024 -25.50578 -24.47439 -24.08311 -23.13049 -22.59143 -21.56114 -20.53330 -19.74278 -19.64233 -19.20299 -17.19733 -16.75577 -16.34354 -15.98061 -15.91214 -15.27430 -14.92920 -14.61496 -14.49645 -14.46980 -14.05905 -13.82042 -13.69507 -13.54975 -13.33188 -13.04066 -12.90383 -12.73608 -12.25786 -12.15475 -12.06688 -11.88298 -11.66752 -11.45276 -11.25534 -11.11044 -10.92209 -10.86926 -10.76726 -10.66274 -10.62825 -10.02471 -9.94814 -9.73233 -9.57933 -9.52198 -9.21772 -9.10445 -8.76477 -8.47437 -8.33349 -6.66318 -5.59837 -2.90696 1.28522 2.24657 2.51746 3.01929 3.12128 3.46350 3.51113 3.53328 4.27851 4.42305 4.59978 4.63086 4.74569 4.80417 4.82074 4.87473 4.98728 5.07128 5.15827 5.20820 5.24299 5.39439 5.40806 5.48860 5.54899 5.59843 5.60668 5.62160 5.68274 5.75759 5.77128 5.86388 5.87070 5.99609 6.03125 6.09786 6.13090 6.28180 6.36150 6.38231 6.50968 6.62829 6.65182 6.77452 6.94039 7.07264 7.31257 7.39149 7.71215 7.88480 7.96836 8.00222 8.24254 8.40967 9.35330 9.96932 10.65594 11.51969 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.003554 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.273451 B = 7875.534253 C = 9242.228213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.254 5.254 4 N -0.284 5.284 5 C -0.007 4.007 6 C -0.204 4.204 7 C -0.024 4.024 8 C 0.573 3.427 9 O -0.493 6.493 10 N -0.592 5.592 11 C 0.092 3.908 12 C -0.133 4.133 13 C -0.121 4.121 14 C -0.131 4.131 15 C 0.163 3.837 16 H 0.072 0.928 17 C -0.095 4.095 18 H 0.107 0.893 19 C -0.135 4.135 20 C 0.182 3.818 21 N -0.605 5.605 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.008 4.008 25 N -0.918 5.918 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.139 3.861 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.034 0.966 49 H 0.041 0.959 50 H 0.250 0.750 51 H 0.034 0.966 52 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 17.993 -14.732 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.042 5.042 4 N -0.116 5.116 5 C -0.183 4.183 6 C -0.232 4.232 7 C -0.153 4.153 8 C 0.360 3.640 9 O -0.368 6.368 10 N -0.326 5.326 11 C -0.031 4.031 12 C -0.172 4.172 13 C -0.158 4.158 14 C -0.169 4.169 15 C 0.060 3.940 16 H 0.090 0.910 17 C -0.114 4.114 18 H 0.125 0.875 19 C -0.172 4.172 20 C 0.057 3.943 21 N -0.331 5.331 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.205 4.205 25 N -0.565 5.565 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.207 1.207 30 C 0.012 3.988 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.200 0.800 37 H 0.179 0.821 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.052 0.948 52 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -6.300 16.256 -15.367 23.240 hybrid contribution -0.002 -0.032 1.272 1.272 sum -6.302 16.224 -14.096 22.397 Atomic orbital electron populations 1.22097 0.93528 1.03841 1.02665 1.22228 0.95941 0.76656 1.06380 1.45866 1.43780 1.12241 1.02331 1.73189 1.16851 1.07441 1.14110 1.23539 1.05158 0.94409 0.95168 1.22340 1.07923 0.97420 0.95553 1.21675 1.10227 0.92932 0.90460 1.16987 0.78645 0.85637 0.82771 1.90906 1.50406 1.18517 1.76990 1.47702 1.67134 1.10103 1.07659 1.22216 0.96649 0.82798 1.01432 1.21911 0.96993 1.01493 0.96766 1.21548 1.01895 0.96986 0.95398 1.22008 0.96968 0.95737 1.02173 1.21421 0.96574 0.97741 0.78242 0.90980 1.22840 0.99322 0.91415 0.97849 0.87524 1.23255 0.94184 0.98929 1.00872 1.21064 0.90270 0.92745 0.90177 1.44477 1.27493 1.19977 1.41105 1.19056 1.11974 0.95173 1.09277 0.90647 1.24796 0.97376 0.98175 1.00122 1.70027 1.14944 1.26975 1.44586 0.86174 0.77471 0.82934 0.79694 1.21751 1.21894 1.20726 1.21628 0.94877 0.89510 0.92802 0.92019 0.89775 0.91901 0.88100 0.86294 0.79959 0.82102 0.91279 0.88283 0.90866 0.91648 0.91775 0.91773 0.91421 0.90058 0.90039 0.94413 0.94751 0.94060 0.93964 0.94819 0.97281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.11 1.23 6.65 -4.04 -0.03 1.20 16 3 N -0.25 -3.26 3.35 -57.13 -0.19 -3.45 16 4 N -0.28 -3.56 11.90 30.59 0.36 -3.20 16 5 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 6 C -0.20 -2.10 8.59 -38.98 -0.34 -2.43 16 7 C -0.02 -0.30 6.36 -82.06 -0.52 -0.82 16 8 C 0.57 8.23 7.11 -12.64 -0.09 8.14 16 9 O -0.49 -8.64 8.22 5.25 0.04 -8.60 16 10 N -0.59 -7.33 2.97 -166.57 -0.50 -7.83 16 11 C 0.09 0.80 5.17 -3.71 -0.02 0.78 16 12 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16 13 C -0.12 -1.07 5.88 -26.69 -0.16 -1.23 16 14 C -0.13 -1.54 4.89 -26.61 -0.13 -1.67 16 15 C 0.16 2.27 2.56 -67.60 -0.17 2.10 16 16 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 17 C -0.09 -1.76 1.89 -88.47 -0.17 -1.93 16 18 H 0.11 2.19 5.97 -52.02 -0.31 1.88 16 19 C -0.13 -2.82 5.53 -24.90 -0.14 -2.96 16 20 C 0.18 4.81 5.38 -3.07 -0.02 4.80 16 21 N -0.60 -16.37 3.39 -170.07 -0.58 -16.95 16 22 C -0.23 -6.61 10.26 -15.06 -0.15 -6.76 16 23 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 24 C -0.01 -0.25 5.47 -17.43 -0.10 -0.34 16 25 N -0.92 -28.30 10.38 55.49 0.58 -27.73 16 26 Si 0.91 22.87 29.56 -169.99 -5.03 17.85 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 C 0.14 2.98 5.37 -2.53 -0.01 2.97 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.12 1.56 6.54 -51.93 -0.34 1.22 16 36 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.16 1.25 6.59 -52.48 -0.35 0.90 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.81 4.42 -51.92 -0.23 0.58 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.99 7.25 -51.93 -0.38 0.62 16 46 H 0.08 1.73 5.48 -52.19 -0.29 1.45 16 47 H 0.04 0.75 7.86 -51.93 -0.41 0.35 16 48 H 0.03 1.00 7.53 -51.93 -0.39 0.61 16 49 H 0.04 1.22 7.39 -51.92 -0.38 0.83 16 50 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 52 H 0.01 0.20 7.92 -51.93 -0.41 -0.21 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -34.41 389.18 -9.98 -44.39 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.51 Total: 0.57 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.03 Total: -0.92 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.32 Total: -59.15 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.04 Total: -8.60 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.41 -9.98 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039222453.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.045 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds