Wall clock time and date at job start Wed Apr 1 2020 04:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47302 * 2 1 4 4 N 1.28439 * 125.19029 * 262.95459 * 3 2 1 5 5 C 1.30868 * 110.92532 * 179.97438 * 4 3 2 6 6 C 1.39670 * 107.86166 * 359.77704 * 5 4 3 7 7 C 1.36600 * 125.18680 * 82.93528 * 3 2 1 8 8 C 1.47167 * 126.88964 * 359.97438 * 7 3 2 9 9 O 1.21631 * 119.99489 * 28.46226 * 8 7 3 10 10 N 1.34773 * 119.99979 * 208.46567 * 8 7 3 11 11 C 1.46927 * 120.63489 * 9.19574 * 10 8 7 12 12 C 1.53189 * 108.77851 * 126.41089 * 11 10 8 13 13 C 1.53040 * 109.31216 * 54.63707 * 12 11 10 14 14 C 1.53039 * 109.53597 * 298.63423 * 13 12 11 15 15 C 1.46926 * 120.62903 * 189.21592 * 10 8 7 16 16 H 1.09001 * 109.58520 * 113.65774 * 15 10 8 17 17 C 1.52998 * 109.58513 * 353.37288 * 15 10 8 18 18 H 1.08997 * 110.88848 * 312.58974 * 17 15 10 19 19 C 1.55158 * 111.00368 * 76.51617 * 17 15 10 20 20 C 1.54321 * 102.94284 * 153.57360 * 19 17 15 21 21 N 1.47011 * 107.27538 * 337.80684 * 20 19 17 22 22 C 1.36942 * 125.65328 * 179.20709 * 21 20 19 23 23 H 1.07999 * 119.99734 * 175.42684 * 22 21 20 24 24 C 1.38810 * 119.99722 * 355.42547 * 22 21 20 25 25 N 1.31623 * 119.99783 * 8.57536 * 24 22 21 26 26 Si 1.86800 * 120.00011 * 188.56793 * 24 22 21 27 27 H 1.48500 * 109.46939 * 94.89579 * 26 24 22 28 28 H 1.48497 * 109.47348 * 214.89869 * 26 24 22 29 29 H 1.48498 * 109.47015 * 334.89880 * 26 24 22 30 30 C 1.47427 * 108.69973 * 358.93882 * 21 20 19 31 31 H 1.09003 * 109.46670 * 64.43389 * 1 2 3 32 32 H 1.08993 * 109.47409 * 184.43330 * 1 2 3 33 33 H 1.08998 * 109.46995 * 304.44042 * 1 2 3 34 34 H 1.09001 * 109.47315 * 239.99800 * 2 1 3 35 35 H 1.09005 * 109.46918 * 119.99681 * 2 1 3 36 36 H 1.08003 * 126.06804 * 180.02562 * 5 4 3 37 37 H 1.08007 * 127.32148 * 180.27003 * 6 5 4 38 38 H 1.09000 * 109.58484 * 246.20195 * 11 10 8 39 39 H 1.09009 * 109.58362 * 6.47912 * 11 10 8 40 40 H 1.09000 * 109.49960 * 174.58795 * 12 11 10 41 41 H 1.09003 * 109.49344 * 294.65306 * 12 11 10 42 42 H 1.08995 * 109.46291 * 58.65135 * 13 12 11 43 43 H 1.08999 * 109.46260 * 178.63280 * 13 12 11 44 44 H 1.09002 * 109.50262 * 301.41157 * 14 13 12 45 45 H 1.09004 * 109.49661 * 181.31737 * 14 13 12 46 46 H 1.09004 * 110.71609 * 271.93856 * 19 17 15 47 47 H 1.08997 * 110.71890 * 35.03151 * 19 17 15 48 48 H 1.09003 * 109.88345 * 218.38253 * 20 19 17 49 49 H 1.09010 * 109.88187 * 97.22601 * 20 19 17 50 50 H 0.96998 * 119.99328 * 179.97438 * 25 24 22 51 51 H 1.09004 * 110.36648 * 142.96802 * 30 21 20 52 52 H 1.08999 * 110.37125 * 265.29037 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3865 2.0361 -1.0417 5 6 2.7716 3.2453 -0.7218 6 6 2.6344 3.3867 0.6610 7 6 2.1514 2.1691 1.1079 8 6 1.8375 1.7997 2.4975 9 8 1.9166 0.6384 2.8506 10 7 1.4625 2.7480 3.3786 11 6 1.1677 4.1148 2.9272 12 6 -0.2256 4.5094 3.4268 13 6 -0.2915 4.3207 4.9441 14 6 -0.0542 2.8483 5.2875 15 6 1.3411 2.4349 4.8089 16 1 2.0990 2.9831 5.3686 17 6 1.5323 0.9321 5.0230 18 1 0.9348 0.3594 4.3138 19 6 3.0315 0.5434 4.9298 20 6 3.1136 -0.7284 5.7999 21 7 1.9679 -0.7022 6.7207 22 6 1.6690 -1.6620 7.6506 23 1 0.8442 -1.5152 8.3322 24 6 2.4260 -2.8236 7.7169 25 7 3.5288 -2.9319 7.0066 26 14 1.8798 -4.2330 8.8145 27 1 1.0966 -5.2085 8.0143 28 1 3.0733 -4.9066 9.3861 29 1 1.0350 -3.7043 9.9154 30 6 1.1976 0.5319 6.4816 31 1 -0.3633 0.4435 -0.9271 32 1 -0.3634 -1.0245 0.0794 33 1 -0.3633 0.5812 0.8475 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8901 36 1 3.1279 4.0011 -1.4060 37 1 2.8589 4.2601 1.2553 38 1 1.9098 4.8019 3.3337 39 1 1.1921 4.1531 1.8380 40 1 -0.4179 5.5539 3.1814 41 1 -0.9755 3.8793 2.9484 42 1 0.4750 4.9325 5.4197 43 1 -1.2741 4.6238 5.3055 44 1 -0.8057 2.2335 4.7921 45 1 -0.1244 2.7105 6.3665 46 1 3.3096 0.3240 3.8989 47 1 3.6610 1.3343 5.3376 48 1 4.0448 -0.7304 6.3666 49 1 3.0606 -1.6146 5.1672 50 1 4.0580 -3.7435 7.0533 51 1 0.1299 0.3389 6.5864 52 1 1.5119 1.3150 7.1714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039222453.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:29 Heat of formation + Delta-G solvation = 82.503573 kcal Electronic energy + Delta-G solvation = -32860.732380 eV Core-core repulsion = 28863.181885 eV Total energy + Delta-G solvation = -3997.550495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.56343 -41.62991 -38.74893 -38.32919 -35.55642 -34.95967 -33.98300 -32.83469 -31.37836 -30.91079 -30.66802 -28.78138 -26.97623 -25.98814 -24.93976 -24.31653 -23.53469 -22.55413 -21.93299 -21.28755 -21.02992 -20.16141 -18.84237 -18.11300 -17.44874 -17.08961 -17.01707 -16.59057 -16.33514 -15.93234 -15.65819 -15.53213 -15.33488 -15.07851 -14.71454 -14.50195 -14.34622 -14.15001 -13.98676 -13.92381 -13.68869 -13.56941 -13.51546 -13.23633 -13.04129 -12.83046 -12.77310 -12.32876 -12.20847 -12.15411 -11.99872 -11.93188 -11.74549 -11.68114 -11.53708 -11.38652 -11.31720 -11.12904 -10.69273 -10.22602 -10.11578 -9.82287 -9.47188 -8.87018 -7.85526 -5.19967 0.34446 1.35064 1.42124 1.45750 1.54461 1.71143 2.06634 2.11435 2.49075 3.29329 3.37466 3.58308 3.65363 3.81538 3.90985 3.95160 4.00577 4.09833 4.13328 4.23139 4.25078 4.26288 4.29775 4.37700 4.44295 4.56554 4.61358 4.65441 4.66688 4.76403 4.79482 4.82931 4.88180 4.94085 4.95815 4.99814 5.02548 5.12171 5.14579 5.22476 5.24474 5.31744 5.44842 5.50734 5.56622 5.59827 5.71995 5.75032 5.79646 5.84683 6.19362 6.38863 7.08138 7.09639 7.20364 7.78999 8.46299 9.25759 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.003554 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.273451 B = 7875.534253 C = 9242.228213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.106 3.894 3 N -0.267 5.267 4 N -0.305 5.305 5 C -0.003 4.003 6 C -0.186 4.186 7 C -0.049 4.049 8 C 0.570 3.430 9 O -0.539 6.539 10 N -0.587 5.587 11 C 0.086 3.914 12 C -0.129 4.129 13 C -0.115 4.115 14 C -0.127 4.127 15 C 0.170 3.830 16 H 0.082 0.918 17 C -0.073 4.073 18 H 0.085 0.915 19 C -0.117 4.117 20 C 0.195 3.805 21 N -0.628 5.628 22 C -0.244 4.244 23 H 0.084 0.916 24 C -0.070 4.070 25 N -0.952 5.952 26 Si 0.980 3.020 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.263 1.263 30 C 0.136 3.864 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.219 0.781 37 H 0.192 0.808 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.050 0.950 48 H -0.004 1.004 49 H -0.004 1.004 50 H 0.245 0.755 51 H 0.038 0.962 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 21.536 -15.303 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.055 5.055 4 N -0.138 5.138 5 C -0.179 4.179 6 C -0.215 4.215 7 C -0.178 4.178 8 C 0.357 3.643 9 O -0.418 6.418 10 N -0.320 5.320 11 C -0.034 4.034 12 C -0.167 4.167 13 C -0.152 4.152 14 C -0.166 4.166 15 C 0.066 3.934 16 H 0.099 0.901 17 C -0.092 4.092 18 H 0.103 0.897 19 C -0.154 4.154 20 C 0.069 3.931 21 N -0.354 5.354 22 C -0.373 4.373 23 H 0.102 0.898 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.807 3.193 27 H -0.216 1.216 28 H -0.221 1.221 29 H -0.187 1.187 30 C 0.011 3.989 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.236 0.764 37 H 0.209 0.791 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.014 0.986 49 H 0.014 0.986 50 H 0.054 0.946 51 H 0.056 0.944 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.525 19.873 -15.938 26.563 hybrid contribution 0.374 -1.072 1.404 1.806 sum -7.151 18.801 -14.534 24.816 Atomic orbital electron populations 1.22008 0.92583 1.04216 1.02239 1.22192 0.96711 0.76738 1.05720 1.45950 1.44526 1.12498 1.02523 1.73182 1.17586 1.08618 1.14365 1.24207 1.03724 0.94142 0.95813 1.22727 1.05835 0.97076 0.95816 1.21662 1.12140 0.94256 0.89722 1.17307 0.77964 0.85293 0.83686 1.90884 1.52637 1.20332 1.77916 1.47783 1.66168 1.11465 1.06573 1.22544 0.97973 0.80727 1.02201 1.21909 0.95926 1.03065 0.95787 1.21531 1.03104 0.94339 0.96265 1.21965 0.94845 0.98120 1.01638 1.21220 0.98423 0.93982 0.79725 0.90056 1.22562 0.96700 0.94928 0.95058 0.89662 1.23068 0.96464 0.96402 0.99509 1.20754 0.88828 0.93804 0.89687 1.44824 1.28379 1.21453 1.40724 1.19520 1.11956 0.96035 1.09783 0.89785 1.25738 0.97465 1.00883 1.02180 1.70275 1.16153 1.27227 1.46489 0.85041 0.76959 0.79130 0.78137 1.21554 1.22066 1.18747 1.21834 0.94430 0.87709 0.94976 0.91043 0.88815 0.93673 0.86792 0.88835 0.76441 0.79108 0.88784 0.87388 0.87789 0.92870 0.90445 0.90483 0.92746 0.90484 0.90206 0.93143 0.98570 0.98599 0.94602 0.94351 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 10.24 71.98 0.74 -2.40 16 2 C 0.11 2.53 6.65 86.38 0.57 3.11 16 3 N -0.27 -6.77 3.35 -334.67 -1.12 -7.89 16 4 N -0.31 -7.22 11.90 -57.14 -0.68 -7.90 16 5 C 0.00 -0.06 12.03 85.18 1.02 0.97 16 6 C -0.19 -3.26 8.59 22.66 0.19 -3.07 16 7 C -0.05 -1.21 6.36 40.79 0.26 -0.95 16 8 C 0.57 16.29 7.11 86.59 0.62 16.90 16 9 O -0.54 -19.88 8.22 -4.13 -0.03 -19.92 16 10 N -0.59 -13.51 2.97 -799.16 -2.38 -15.89 16 11 C 0.09 1.18 5.17 86.36 0.45 1.62 16 12 C -0.13 -1.52 6.08 30.67 0.19 -1.34 16 13 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 14 C -0.13 -2.77 4.89 30.67 0.15 -2.62 16 15 C 0.17 4.50 2.56 44.98 0.11 4.62 16 16 H 0.08 2.07 7.90 -2.39 -0.02 2.05 16 17 C -0.07 -2.77 1.89 -9.40 -0.02 -2.79 16 18 H 0.09 3.68 5.97 -4.86 -0.03 3.65 16 19 C -0.12 -5.09 5.53 31.78 0.18 -4.91 16 20 C 0.19 10.97 5.38 86.73 0.47 11.44 16 21 N -0.63 -35.38 3.39 -691.99 -2.35 -37.73 16 22 C -0.24 -14.66 10.26 84.03 0.86 -13.80 16 23 H 0.08 4.76 7.84 -2.91 -0.02 4.74 16 24 C -0.07 -4.26 5.47 84.86 0.46 -3.79 16 25 N -0.95 -61.82 10.38 21.65 0.22 -61.60 16 26 Si 0.98 48.25 29.56 68.60 2.03 50.27 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 29 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 30 C 0.14 5.93 5.37 86.85 0.47 6.40 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.09 2.71 6.54 -2.38 -0.02 2.69 16 36 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.19 2.04 6.59 -2.91 -0.02 2.02 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 1.32 4.42 -2.38 -0.01 1.31 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.74 7.25 -2.39 -0.02 1.72 16 46 H 0.08 3.58 5.48 -7.59 -0.04 3.54 16 47 H 0.05 2.04 7.86 -2.39 -0.02 2.02 16 48 H 0.00 -0.24 7.53 -2.39 -0.02 -0.26 16 49 H 0.00 -0.28 7.39 -2.38 -0.02 -0.29 16 50 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.02 0.99 7.92 -2.39 -0.02 0.97 16 Total: -1.00 -80.49 389.18 3.46 -77.03 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.86 Total: 15.66 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.90 Total: 7.95 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -6.30 Total: -131.00 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.03 Total: -19.92 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -80.49 3.46 -77.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039222453.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.536 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds