Wall clock time and date at job start Wed Apr 1 2020 04:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47306 * 2 1 4 4 C 1.34259 * 125.75322 * 124.99807 * 3 2 1 5 5 C 1.38041 * 107.41292 * 179.97438 * 4 3 2 6 6 C 1.47431 * 126.41447 * 179.97438 * 5 4 3 7 7 O 1.21602 * 119.99917 * 208.76407 * 6 5 4 8 8 N 1.34771 * 120.00031 * 28.76156 * 6 5 4 9 9 C 1.46924 * 120.63099 * 5.58105 * 8 6 5 10 10 C 1.53192 * 108.77682 * 233.58866 * 9 8 6 11 11 C 1.53044 * 109.30954 * 305.36068 * 10 9 8 12 12 H 1.08999 * 109.45051 * 181.37840 * 11 10 9 13 13 N 1.46500 * 109.46022 * 301.34742 * 11 10 9 14 14 C 1.36936 * 119.99935 * 275.06358 * 13 11 10 15 15 H 1.08001 * 119.99960 * 359.73105 * 14 13 11 16 16 C 1.38812 * 120.00044 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00083 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00007 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47173 * 89.99893 * 18 16 14 20 20 H 1.48499 * 109.47143 * 209.99866 * 18 16 14 21 21 H 1.48509 * 109.46956 * 329.99972 * 18 16 14 22 22 C 1.53041 * 109.53704 * 61.36833 * 11 10 9 23 23 C 1.46923 * 120.63219 * 185.55804 * 8 6 5 24 24 H 1.09004 * 109.58735 * 246.19869 * 23 8 6 25 25 C 1.52996 * 109.70544 * 6.55710 * 23 8 6 26 26 C 1.41292 * 107.17242 * 0.22822 * 5 4 3 27 27 C 1.50705 * 125.98872 * 179.74071 * 26 5 4 28 28 C 1.52997 * 117.49765 * 188.74414 * 27 26 5 29 29 C 1.53002 * 117.50002 * 120.08469 * 27 26 5 30 30 N 1.30453 * 108.02229 * 359.61306 * 26 5 4 31 31 H 1.08994 * 109.47542 * 300.00321 * 1 2 3 32 32 H 1.09004 * 109.46904 * 60.00204 * 1 2 3 33 33 H 1.09005 * 109.47101 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47239 * 239.99555 * 2 1 3 35 35 H 1.09004 * 109.46904 * 119.99796 * 2 1 3 36 36 H 1.07997 * 126.29182 * 0.02562 * 4 3 2 37 37 H 1.09007 * 109.58696 * 353.37005 * 9 8 6 38 38 H 1.08997 * 109.58965 * 113.65427 * 9 8 6 39 39 H 1.08999 * 109.49778 * 185.41120 * 10 9 8 40 40 H 1.08999 * 109.50140 * 65.31162 * 10 9 8 41 41 H 0.96997 * 119.99763 * 95.07215 * 13 11 10 42 42 H 0.97000 * 120.00170 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.49539 * 58.58524 * 22 11 10 44 44 H 1.08999 * 109.49901 * 178.68045 * 22 11 10 45 45 H 1.09003 * 109.47748 * 172.54286 * 25 23 8 46 46 H 1.09003 * 109.47347 * 292.54369 * 25 23 8 47 47 H 1.09002 * 109.47283 * 52.53963 * 25 23 8 48 48 H 1.09000 * 115.54836 * 334.41333 * 27 26 5 49 49 H 1.08998 * 117.50047 * 359.97438 * 28 27 26 50 50 H 1.08999 * 117.49884 * 145.01710 * 28 27 26 51 51 H 1.08995 * 117.49889 * 214.98120 * 29 27 26 52 52 H 1.09001 * 117.49634 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0714 3.2307 0.5364 6 6 3.9326 4.2033 1.2335 7 8 3.6666 5.3892 1.1934 8 7 5.0146 3.7781 1.9153 9 6 5.4187 2.3661 1.8731 10 6 5.5456 1.8465 3.3086 11 6 6.5007 2.7504 4.0914 12 1 6.6118 2.3686 5.1063 13 7 7.8081 2.7677 3.4306 14 6 8.7242 1.7860 3.6994 15 1 8.4845 1.0015 4.4019 16 6 9.9631 1.8027 3.0737 17 7 10.2576 2.7622 2.2224 18 14 11.2125 0.4631 3.4399 19 1 11.0248 -0.6621 2.4893 20 1 12.5844 1.0121 3.2924 21 1 11.0215 -0.0255 4.8292 22 6 5.9354 4.1717 4.1405 23 6 5.8128 4.7177 2.7144 24 1 6.8054 4.8192 2.2755 25 6 5.1236 6.0833 2.7456 26 6 2.2941 3.4751 -0.6179 27 6 2.1970 4.7833 -1.3597 28 6 1.1431 4.8932 -2.4633 29 6 2.6266 4.7965 -2.8281 30 7 1.6772 2.3690 -0.9306 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.3139 1.4021 1.7339 37 1 4.6653 1.7862 1.3399 38 1 6.3778 2.2756 1.3633 39 1 5.9372 0.8294 3.2940 40 1 4.5657 1.8527 3.7858 41 1 8.0248 3.4746 2.8027 42 1 11.1232 2.7737 1.7848 43 1 4.9517 4.1560 4.6099 44 1 6.6044 4.8096 4.7181 45 1 5.6454 6.7379 3.4438 46 1 5.1454 6.5241 1.7489 47 1 4.0891 5.9610 3.0662 48 1 2.4008 5.6756 -0.7677 49 1 0.5202 4.0191 -2.6531 50 1 0.6537 5.8578 -2.5976 51 1 3.1126 5.6975 -3.2022 52 1 2.9789 3.8587 -3.2578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044620775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:48 Heat of formation + Delta-G solvation = 86.975695 kcal Electronic energy + Delta-G solvation = -32020.595174 eV Core-core repulsion = 28023.238605 eV Total energy + Delta-G solvation = -3997.356569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.67412 -41.07175 -38.72179 -38.06621 -35.80896 -35.20892 -34.12208 -33.59784 -31.29242 -30.90287 -30.35377 -28.39406 -25.78802 -25.66594 -25.36588 -24.11601 -23.31285 -22.91445 -22.68010 -21.33620 -20.15230 -19.63721 -19.15373 -18.08138 -17.43278 -17.06130 -16.67237 -16.63362 -16.22938 -15.86072 -15.75743 -15.56688 -15.26997 -15.11512 -14.95923 -14.64716 -14.28480 -14.22214 -13.89161 -13.49858 -13.36349 -13.24303 -13.06395 -12.92493 -12.84177 -12.76627 -12.65158 -12.43257 -12.42663 -12.40217 -12.10153 -11.97557 -11.91369 -11.78012 -11.65637 -11.54477 -11.35467 -11.24567 -10.86833 -10.17338 -10.04336 -9.64596 -9.34305 -8.92455 -7.87610 -5.14798 0.52312 1.06825 1.38351 1.50287 1.51098 1.59155 2.08034 2.36401 2.60765 3.01280 3.28406 3.46134 3.52151 3.76991 3.81506 3.92967 3.96079 4.02617 4.08028 4.08811 4.11121 4.14851 4.24952 4.31601 4.37108 4.43229 4.47416 4.54783 4.61930 4.72992 4.73834 4.79308 4.80652 4.87660 4.90502 4.95354 4.97363 5.09828 5.18107 5.20007 5.21959 5.24964 5.29777 5.33203 5.40411 5.44355 5.47678 5.60467 5.80733 5.91392 6.34006 6.52437 6.65433 7.34580 7.40884 8.18223 8.40616 9.35892 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011493 B = 0.003218 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.676914 B = 8698.556976 C = 9598.276788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.352 5.352 4 C 0.103 3.897 5 C -0.308 4.308 6 C 0.591 3.409 7 O -0.566 6.566 8 N -0.595 5.595 9 C 0.104 3.896 10 C -0.141 4.141 11 C 0.166 3.834 12 H 0.052 0.948 13 N -0.732 5.732 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.077 4.077 17 N -0.971 5.971 18 Si 0.966 3.034 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.269 1.269 22 C -0.122 4.122 23 C 0.149 3.851 24 H 0.045 0.955 25 C -0.119 4.119 26 C 0.144 3.856 27 C -0.106 4.106 28 C -0.147 4.147 29 C -0.159 4.159 30 N -0.311 5.311 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.220 0.780 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.371 0.629 42 H 0.247 0.753 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.121 0.879 49 H 0.097 0.903 50 H 0.117 0.883 51 H 0.112 0.888 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.956 -4.405 -3.648 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.005 4.005 3 N -0.130 5.130 4 C -0.048 4.048 5 C -0.322 4.322 6 C 0.381 3.619 7 O -0.447 6.447 8 N -0.327 5.327 9 C -0.019 4.019 10 C -0.181 4.181 11 C 0.057 3.943 12 H 0.070 0.930 13 N -0.373 5.373 14 C -0.359 4.359 15 H 0.097 0.903 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.796 3.204 19 H -0.217 1.217 20 H -0.231 1.231 21 H -0.194 1.194 22 C -0.160 4.160 23 C 0.046 3.954 24 H 0.063 0.937 25 C -0.176 4.176 26 C -0.022 4.022 27 C -0.126 4.126 28 C -0.184 4.184 29 C -0.197 4.197 30 N -0.133 5.133 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.150 0.850 36 H 0.236 0.764 37 H 0.127 0.873 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.204 0.796 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.139 0.861 49 H 0.116 0.884 50 H 0.135 0.865 51 H 0.130 0.870 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.885 -4.709 -4.370 23.769 hybrid contribution 2.127 0.062 0.391 2.164 sum -20.757 -4.646 -3.979 21.640 Atomic orbital electron populations 1.22010 0.93026 1.04265 1.02359 1.22301 0.96793 0.74978 1.06428 1.48902 1.33526 1.11230 1.19357 1.23778 0.92194 0.92842 0.96019 1.20246 1.11808 0.95578 1.04616 1.17535 0.79712 0.87222 0.77403 1.90729 1.73648 1.17394 1.62907 1.47942 1.26873 1.10006 1.47844 1.22121 1.00532 0.80592 0.98609 1.22405 1.00299 1.00308 0.95093 1.20446 0.84899 0.93740 0.95169 0.93048 1.42703 1.12498 1.30431 1.51676 1.19618 0.94101 1.03440 1.18782 0.90277 1.25450 1.00055 1.00770 1.00573 1.69821 1.22690 1.35839 1.33892 0.85248 0.78364 0.78822 0.77972 1.21684 1.23125 1.19397 1.22132 1.01637 0.96967 0.95302 1.21083 0.93364 0.89654 0.91284 0.93688 1.21991 0.99743 0.94157 1.01706 1.21528 0.93201 0.93870 0.93564 1.20485 1.08248 0.92929 0.90904 1.23018 0.91542 1.04245 0.99624 1.23024 0.98426 1.03735 0.94485 1.76959 1.24676 0.96868 1.14803 0.92733 0.92918 0.87898 0.88347 0.84963 0.76411 0.87327 0.93951 0.91001 0.89727 0.79559 0.94443 0.89671 0.91283 0.92828 0.92575 0.92115 0.86119 0.88411 0.86518 0.86981 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.09 71.98 0.73 -0.92 16 2 C 0.11 1.26 7.21 86.38 0.62 1.88 16 3 N -0.35 -7.17 3.65 -346.30 -1.26 -8.44 16 4 C 0.10 2.25 9.17 84.27 0.77 3.02 16 5 C -0.31 -8.96 5.68 -20.15 -0.11 -9.07 16 6 C 0.59 19.76 7.38 86.67 0.64 20.40 16 7 O -0.57 -21.10 11.01 -4.04 -0.04 -21.15 16 8 N -0.59 -19.38 2.97 -798.89 -2.37 -21.76 16 9 C 0.10 3.16 5.57 86.36 0.48 3.64 16 10 C -0.14 -4.01 5.64 30.67 0.17 -3.83 16 11 C 0.17 5.85 3.10 45.02 0.14 5.99 16 12 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 13 N -0.73 -34.15 4.31 -322.81 -1.39 -35.54 16 14 C -0.23 -11.79 9.93 84.03 0.83 -10.95 16 15 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 16 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 17 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16 18 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 C -0.12 -3.84 5.07 30.67 0.16 -3.69 16 23 C 0.15 5.16 3.19 44.97 0.14 5.30 16 24 H 0.05 1.86 6.64 -2.38 -0.02 1.84 16 25 C -0.12 -3.87 7.61 71.98 0.55 -3.32 16 26 C 0.14 4.19 6.79 43.52 0.30 4.48 16 27 C -0.11 -2.84 5.90 -11.54 -0.07 -2.91 16 28 C -0.15 -3.04 10.14 30.62 0.31 -2.73 16 29 C -0.16 -3.58 10.24 30.62 0.31 -3.26 16 30 N -0.31 -8.15 11.92 -46.67 -0.56 -8.70 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.13 0.64 8.06 -2.39 -0.02 0.62 16 36 H 0.22 3.41 6.03 -2.91 -0.02 3.39 16 37 H 0.11 2.66 3.19 -2.38 -0.01 2.65 16 38 H 0.04 1.65 7.74 -2.39 -0.02 1.64 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.37 19.28 6.06 -92.71 -0.56 18.71 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 2.02 6.68 -2.39 -0.02 2.00 16 47 H 0.06 1.99 6.83 -2.39 -0.02 1.98 16 48 H 0.12 3.64 6.79 -2.39 -0.02 3.62 16 49 H 0.10 2.06 7.90 -2.39 -0.02 2.04 16 50 H 0.12 1.93 8.14 -2.39 -0.02 1.92 16 51 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 52 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.56 403.85 3.49 -67.08 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: 0.37 Total: 39.53 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.44 Total: 0.26 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -5.30 Total: -132.61 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.04 Total: -21.15 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.56 3.49 -67.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044620775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.055 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds