Wall clock time and date at job start Wed Apr 1 2020 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.46892 * 2 1 4 4 N 1.28466 * 124.88710 * 89.98022 * 3 2 1 5 5 C 1.31805 * 110.07854 * 179.97438 * 4 3 2 6 6 C 1.47710 * 126.51885 * 179.97438 * 5 4 3 7 7 O 1.21573 * 120.00002 * 185.98921 * 6 5 4 8 8 N 1.34772 * 120.00128 * 5.99199 * 6 5 4 9 9 C 1.46924 * 120.63408 * 354.00924 * 8 6 5 10 10 C 1.53187 * 108.77884 * 126.37004 * 9 8 6 11 11 C 1.53047 * 109.30917 * 54.63785 * 10 9 8 12 12 H 1.09001 * 109.45668 * 58.64673 * 11 10 9 13 13 N 1.46497 * 109.45758 * 178.61573 * 11 10 9 14 14 C 1.36942 * 120.00140 * 275.02934 * 13 11 10 15 15 H 1.07996 * 119.99634 * 359.97438 * 14 13 11 16 16 C 1.38814 * 120.00145 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99887 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99861 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47250 * 89.99603 * 18 16 14 20 20 H 1.48502 * 109.47084 * 329.99305 * 18 16 14 21 21 H 1.48503 * 109.46779 * 209.99656 * 18 16 14 22 22 C 1.53037 * 109.52962 * 298.63032 * 11 10 9 23 23 C 1.46934 * 120.63142 * 173.99264 * 8 6 5 24 24 H 1.09001 * 109.58442 * 113.69745 * 23 8 6 25 25 C 1.52995 * 109.58415 * 353.41252 * 23 8 6 26 26 C 1.41497 * 106.96157 * 0.22269 * 5 4 3 27 27 C 1.35040 * 124.88685 * 269.97228 * 3 2 1 28 28 C 1.50697 * 126.38347 * 0.03719 * 27 3 2 29 29 C 1.52999 * 117.50108 * 213.62129 * 28 27 3 30 30 C 1.52997 * 117.49720 * 144.99857 * 28 27 3 31 31 H 1.09006 * 109.47375 * 60.00163 * 1 2 3 32 32 H 1.08999 * 109.47320 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47370 * 300.00188 * 1 2 3 34 34 H 1.09002 * 109.47208 * 240.00294 * 2 1 3 35 35 H 1.08994 * 109.46953 * 119.99814 * 2 1 3 36 36 H 1.09004 * 109.58140 * 6.58662 * 9 8 6 37 37 H 1.08994 * 109.70827 * 246.23315 * 9 8 6 38 38 H 1.09003 * 109.49952 * 294.69134 * 10 9 8 39 39 H 1.08997 * 109.49808 * 174.59141 * 10 9 8 40 40 H 0.96998 * 120.00520 * 95.02998 * 13 11 10 41 41 H 0.96999 * 119.99819 * 0.02562 * 17 16 14 42 42 H 1.08998 * 109.49950 * 181.32503 * 22 11 10 43 43 H 1.09003 * 109.49471 * 301.41961 * 22 11 10 44 44 H 1.09007 * 109.47512 * 66.15633 * 25 23 8 45 45 H 1.09004 * 109.47127 * 186.15194 * 25 23 8 46 46 H 1.09000 * 109.47444 * 306.15203 * 25 23 8 47 47 H 1.07998 * 127.25128 * 179.76047 * 26 5 4 48 48 H 1.09002 * 115.55147 * 359.33092 * 28 27 3 49 49 H 1.09006 * 117.49422 * 359.97438 * 29 28 27 50 50 H 1.08992 * 117.50331 * 145.02195 * 29 28 27 51 51 H 1.09005 * 117.49991 * 214.97747 * 30 28 27 52 52 H 1.08996 * 117.50137 * 0.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2628 2.0741 1.0538 5 6 2.6881 3.2753 0.7169 6 6 3.0719 4.3628 1.6399 7 8 3.3453 5.4635 1.2021 8 7 3.1190 4.1348 2.9674 9 6 2.6668 2.8521 3.5232 10 6 3.7869 2.2678 4.3895 11 6 4.2019 3.2978 5.4427 12 1 3.3387 3.5591 6.0549 13 7 5.2502 2.7301 6.2941 14 6 4.9124 1.9568 7.3725 15 1 3.8731 1.7658 7.5956 16 6 5.9057 1.4193 8.1796 17 7 7.1722 1.6525 7.9079 18 14 5.4448 0.3638 9.6503 19 1 5.3608 -1.0585 9.2320 20 1 4.1291 0.8021 10.1813 21 1 6.4782 0.5088 10.7069 22 6 4.7334 4.5538 4.7483 23 6 3.6239 5.1642 3.8863 24 1 2.8126 5.5138 4.5247 25 6 4.1863 6.3381 3.0823 26 6 2.7017 3.3269 -0.6971 27 6 2.2762 2.1092 -1.1077 28 6 2.1148 1.6530 -2.5349 29 6 3.1048 2.1972 -3.5667 30 6 1.6568 2.6915 -3.5609 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.4359 2.1630 2.7108 37 1 1.7772 3.0090 4.1331 38 1 4.6438 2.0247 3.7611 39 1 3.4304 1.3646 4.8846 40 1 6.1836 2.9020 6.0940 41 1 7.4115 2.2003 7.1440 42 1 5.0507 5.2778 5.4988 43 1 5.5812 4.2889 4.1165 44 1 3.3766 6.8310 2.5440 45 1 4.6580 7.0497 3.7599 46 1 4.9249 5.9701 2.3701 47 1 2.9921 4.1614 -1.3180 48 1 1.7644 0.6290 -2.6644 49 1 3.8725 2.8855 -3.2133 50 1 3.4060 1.5312 -4.3752 51 1 1.0055 2.3506 -4.3657 52 1 1.4726 3.7047 -3.2038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044627534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:45 Heat of formation + Delta-G solvation = 84.136963 kcal Electronic energy + Delta-G solvation = -31425.242835 eV Core-core repulsion = 27427.763170 eV Total energy + Delta-G solvation = -3997.479665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.86173 -41.40973 -38.82784 -38.15228 -36.47832 -35.72761 -34.04767 -33.75834 -31.44943 -31.07895 -30.56659 -28.41777 -26.13230 -25.63961 -24.89717 -24.58818 -23.28776 -23.21225 -22.56480 -21.72627 -21.03202 -19.88223 -19.32644 -18.35390 -17.68403 -17.19542 -17.13373 -16.74884 -16.15182 -16.12036 -15.82470 -15.51948 -15.36997 -15.31505 -15.06708 -14.77762 -14.65188 -14.46270 -14.13962 -13.56972 -13.51702 -13.35099 -13.20958 -13.06124 -12.91679 -12.75661 -12.68565 -12.49222 -12.40455 -12.29623 -12.19401 -12.11339 -11.98434 -11.88424 -11.70927 -11.49334 -11.22693 -11.19480 -10.76310 -10.39049 -10.15373 -9.77669 -9.64911 -9.12947 -8.39424 -5.33324 0.44360 0.98113 1.39182 1.57197 1.68353 1.82370 1.93131 2.29594 2.70747 3.03179 3.14915 3.39595 3.43111 3.55362 3.58699 3.80019 3.93838 3.97925 3.99185 4.00594 4.03037 4.10043 4.16764 4.23933 4.29798 4.32417 4.43597 4.47587 4.52181 4.60403 4.65222 4.75572 4.77545 4.81130 4.82078 4.88052 4.91012 4.98798 5.02718 5.06405 5.14514 5.17311 5.21765 5.27357 5.30347 5.38203 5.38602 5.59605 5.64317 5.92704 6.32122 6.48288 6.83700 7.08045 7.12719 7.97977 8.11317 9.12469 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.002747 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.858347 B =10191.272624 C =11569.603150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.272 5.272 4 N -0.272 5.272 5 C -0.035 4.035 6 C 0.596 3.404 7 O -0.554 6.554 8 N -0.592 5.592 9 C 0.084 3.916 10 C -0.129 4.129 11 C 0.179 3.821 12 H 0.045 0.955 13 N -0.749 5.749 14 C -0.324 4.324 15 H 0.068 0.932 16 C -0.108 4.108 17 N -0.978 5.978 18 Si 1.130 2.870 19 H -0.285 1.285 20 H -0.272 1.272 21 H -0.294 1.294 22 C -0.122 4.122 23 C 0.149 3.851 24 H 0.086 0.914 25 C -0.125 4.125 26 C -0.198 4.198 27 C 0.063 3.937 28 C -0.106 4.106 29 C -0.161 4.161 30 C -0.154 4.154 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.048 0.952 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.145 0.855 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.357 0.643 41 H 0.242 0.758 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.158 0.842 48 H 0.142 0.858 49 H 0.087 0.913 50 H 0.123 0.877 51 H 0.124 0.876 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -2.350 -25.927 30.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.060 5.060 4 N -0.107 5.107 5 C -0.193 4.193 6 C 0.384 3.616 7 O -0.433 6.433 8 N -0.324 5.324 9 C -0.040 4.040 10 C -0.170 4.170 11 C 0.071 3.929 12 H 0.063 0.937 13 N -0.390 5.390 14 C -0.456 4.456 15 H 0.086 0.914 16 C -0.299 4.299 17 N -0.627 5.627 18 Si 0.955 3.045 19 H -0.211 1.211 20 H -0.197 1.197 21 H -0.221 1.221 22 C -0.161 4.161 23 C 0.046 3.954 24 H 0.104 0.896 25 C -0.182 4.182 26 C -0.226 4.226 27 C -0.062 4.062 28 C -0.126 4.126 29 C -0.198 4.198 30 C -0.192 4.192 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.149 0.851 35 H 0.122 0.878 36 H 0.162 0.838 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.188 0.812 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.176 0.824 48 H 0.160 0.840 49 H 0.106 0.894 50 H 0.141 0.859 51 H 0.143 0.857 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.503 -3.482 -23.855 29.216 hybrid contribution 0.437 1.506 -1.420 2.116 sum -16.066 -1.975 -25.275 30.014 Atomic orbital electron populations 1.22140 0.92252 1.04971 1.02744 1.22464 0.96950 0.75455 1.07054 1.46106 1.44523 1.13327 1.02009 1.73005 1.19259 1.04774 1.13710 1.21894 1.09647 0.93065 0.94660 1.17327 0.76860 0.86104 0.81324 1.90782 1.51387 1.23496 1.77596 1.48089 1.62067 1.16859 1.05344 1.22751 0.95796 0.85057 1.00396 1.22323 0.97717 0.99628 0.97296 1.20347 0.91012 0.91464 0.90125 0.93678 1.42668 1.03930 1.61017 1.31406 1.20392 0.94313 1.25738 1.05126 0.91405 1.27221 0.92959 1.03641 1.06036 1.70957 1.17783 1.43036 1.30886 0.82593 0.74927 0.74532 0.72452 1.21141 1.19671 1.22090 1.22145 0.97927 0.97583 0.98438 1.21318 0.95725 0.87871 0.90459 0.89623 1.22049 1.01625 0.96157 0.98355 1.21447 1.09500 0.99084 0.92605 1.20845 1.03439 0.91409 0.90532 1.20502 1.08321 1.00738 0.83006 1.23167 0.93096 1.03516 1.00056 1.23159 0.97906 0.98204 0.99908 0.91362 0.87458 0.93305 0.85098 0.87789 0.83832 0.91093 0.94537 0.92159 0.81180 0.94713 0.90651 0.93229 0.90878 0.92016 0.93582 0.82402 0.83989 0.89417 0.85902 0.85747 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.24 71.98 0.74 -0.66 16 2 C 0.10 1.09 6.74 86.38 0.58 1.67 16 3 N -0.27 -5.40 3.30 -334.61 -1.10 -6.51 16 4 N -0.27 -7.30 8.31 -48.18 -0.40 -7.70 16 5 C -0.03 -1.05 6.90 42.46 0.29 -0.75 16 6 C 0.60 20.21 7.50 86.75 0.65 20.87 16 7 O -0.55 -20.31 12.50 -3.95 -0.05 -20.35 16 8 N -0.59 -19.47 2.97 -798.57 -2.37 -21.84 16 9 C 0.08 2.66 6.34 86.36 0.55 3.21 16 10 C -0.13 -4.94 5.66 30.67 0.17 -4.76 16 11 C 0.18 7.50 2.73 45.02 0.12 7.63 16 12 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 13 N -0.75 -39.20 5.12 -322.81 -1.65 -40.85 16 14 C -0.32 -18.53 9.93 84.03 0.83 -17.69 16 15 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 16 C -0.11 -6.38 5.50 84.86 0.47 -5.92 16 17 N -0.98 -62.77 13.70 21.65 0.30 -62.47 16 18 Si 1.13 52.74 29.92 68.60 2.05 54.79 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 C -0.12 -4.46 4.84 30.67 0.15 -4.31 16 23 C 0.15 4.79 3.49 44.97 0.16 4.95 16 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 25 C -0.12 -3.84 7.61 71.98 0.55 -3.30 16 26 C -0.20 -4.96 9.86 22.41 0.22 -4.74 16 27 C 0.06 1.19 6.60 41.40 0.27 1.47 16 28 C -0.11 -1.13 5.94 -11.54 -0.07 -1.20 16 29 C -0.16 -1.54 10.05 30.59 0.31 -1.23 16 30 C -0.15 -1.37 10.05 30.59 0.31 -1.06 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.13 0.62 7.12 -2.39 -0.02 0.60 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.15 4.39 3.69 -88.48 -0.33 4.07 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.36 19.75 6.63 -92.71 -0.61 19.14 16 41 H 0.24 15.62 6.77 -92.71 -0.63 14.99 16 42 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 2.32 6.56 -2.38 -0.02 2.30 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.05 1.57 6.94 -2.39 -0.02 1.56 16 47 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 48 H 0.14 0.75 7.16 -2.39 -0.02 0.73 16 49 H 0.09 1.12 7.95 -2.38 -0.02 1.10 16 50 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 52 H 0.09 1.05 7.96 -2.39 -0.02 1.03 16 Total: -1.00 -76.37 407.71 3.20 -73.17 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: 0.13 Total: 37.60 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 6.30 Total: -5.83 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -5.23 Total: -139.38 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.05 Total: 54.79 kcal Total: -76.37 3.20 -73.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044627534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.309 kcal (2) G-P(sol) polarization free energy of solvation -76.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds