Wall clock time and date at job start Wed Apr 1 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.46872 * 2 1 4 4 N 1.28446 * 125.18724 * 272.19001 * 3 2 1 5 5 C 1.30858 * 110.92777 * 180.27957 * 4 3 2 6 6 C 1.50698 * 126.07195 * 179.67893 * 5 4 3 7 7 C 1.53000 * 117.49790 * 163.78711 * 6 5 4 8 8 C 1.53005 * 117.49811 * 95.13197 * 6 5 4 9 9 C 1.39681 * 107.86236 * 359.71312 * 5 4 3 10 10 C 1.36598 * 125.19359 * 91.97669 * 3 2 1 11 11 C 1.47156 * 126.88303 * 0.02562 * 10 3 2 12 12 O 1.21628 * 120.00349 * 335.55014 * 11 10 3 13 13 N 1.34777 * 120.00360 * 155.55369 * 11 10 3 14 14 C 1.46929 * 120.62632 * 353.12675 * 13 11 10 15 15 C 1.53195 * 108.76630 * 233.64060 * 14 13 11 16 16 C 1.53045 * 109.30796 * 305.34496 * 15 14 13 17 17 H 1.08995 * 109.46270 * 301.36564 * 16 15 14 18 18 N 1.46504 * 109.45639 * 181.39687 * 16 15 14 19 19 C 1.36943 * 119.99866 * 84.97356 * 18 16 15 20 20 H 1.08003 * 119.99705 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00153 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99992 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47268 * 89.99564 * 23 21 19 25 25 H 1.48504 * 109.46868 * 329.99558 * 23 21 19 26 26 H 1.48503 * 109.46987 * 209.99972 * 23 21 19 27 27 C 1.53034 * 109.52754 * 61.39025 * 16 15 14 28 28 C 1.46925 * 120.63370 * 173.15360 * 13 11 10 29 29 H 1.08993 * 109.58621 * 6.57808 * 28 13 11 30 30 C 1.52999 * 109.58410 * 246.15452 * 28 13 11 31 31 H 1.09001 * 109.47657 * 298.62071 * 1 2 3 32 32 H 1.09004 * 109.47265 * 58.62252 * 1 2 3 33 33 H 1.09005 * 109.47209 * 178.62387 * 1 2 3 34 34 H 1.08996 * 109.47167 * 239.99821 * 2 1 3 35 35 H 1.09005 * 109.47463 * 119.99344 * 2 1 3 36 36 H 1.08996 * 115.55286 * 309.45720 * 6 5 4 37 37 H 1.09000 * 117.50243 * 0.02562 * 7 6 5 38 38 H 1.09004 * 117.49707 * 145.02203 * 7 6 5 39 39 H 1.09002 * 117.49920 * 214.98458 * 8 6 5 40 40 H 1.09003 * 117.49947 * 359.97015 * 8 6 5 41 41 H 1.07994 * 127.32459 * 180.02562 * 9 5 4 42 42 H 1.09000 * 109.58980 * 353.41916 * 14 13 11 43 43 H 1.09003 * 109.58587 * 113.70211 * 14 13 11 44 44 H 1.08999 * 109.48685 * 185.40577 * 15 14 13 45 45 H 1.08994 * 109.51010 * 65.30020 * 15 14 13 46 46 H 0.96998 * 120.00313 * 264.97496 * 18 16 15 47 47 H 0.97006 * 119.99950 * 359.97438 * 22 21 19 48 48 H 1.08997 * 109.50080 * 58.57644 * 27 16 15 49 49 H 1.09004 * 109.49635 * 178.67487 * 27 16 15 50 50 H 1.08999 * 109.47104 * 300.71109 * 30 28 13 51 51 H 1.09002 * 109.47314 * 60.70947 * 30 28 13 52 52 H 1.09004 * 109.47078 * 180.71083 * 30 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2271 2.0925 -1.0490 5 6 2.6670 3.2822 -0.7271 6 6 3.0272 4.3851 -1.6887 7 6 3.1548 5.8012 -1.1237 8 6 1.9542 5.4311 -1.9980 9 6 2.7443 3.3480 0.6660 10 6 2.3169 2.1107 1.1156 11 6 2.2120 1.6675 2.5149 12 8 1.4444 0.7725 2.8135 13 7 2.9665 2.2532 3.4658 14 6 4.0039 3.2284 3.1029 15 6 5.3331 2.7880 3.7242 16 6 5.1489 2.5983 5.2316 17 1 4.8073 3.5329 5.6763 18 7 6.4264 2.2094 5.8343 19 6 7.3324 3.1697 6.1980 20 1 7.1052 4.2137 6.0402 21 6 8.5425 2.8014 6.7694 22 7 8.8195 1.5291 6.9613 23 14 9.7780 4.1114 7.2662 24 1 9.5245 4.5240 8.6700 25 1 9.6383 5.2883 6.3714 26 1 11.1535 3.5633 7.1520 27 6 4.1108 1.5030 5.4862 28 6 2.7676 1.9284 4.8848 29 1 2.0514 1.1118 4.9758 30 6 2.2418 3.1604 5.6241 31 1 -0.3634 0.4922 0.9021 32 1 -0.3634 0.5351 -0.8774 33 1 -0.3634 -1.0274 -0.0247 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 3.7025 4.1028 -2.4964 37 1 2.9787 5.9351 -0.0564 38 1 3.9139 6.4507 -1.5600 39 1 1.9237 5.8370 -3.0092 40 1 0.9876 5.3211 -1.5064 41 1 3.0682 4.1862 1.2650 42 1 4.1034 3.2695 2.0182 43 1 3.7289 4.2126 3.4821 44 1 6.0896 3.5517 3.5435 45 1 5.6508 1.8470 3.2752 46 1 6.6305 1.2717 5.9756 47 1 8.1777 0.8488 6.7036 48 1 4.4401 0.5742 5.0204 49 1 3.9972 1.3519 6.5597 50 1 2.9577 3.9764 5.5254 51 1 1.2862 3.4615 5.1948 52 1 2.1069 2.9211 6.6790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044638759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:17 Heat of formation + Delta-G solvation = 88.329575 kcal Electronic energy + Delta-G solvation = -31665.235352 eV Core-core repulsion = 27667.937492 eV Total energy + Delta-G solvation = -3997.297860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.82288 -40.14004 -37.82842 -37.35485 -34.99721 -34.35632 -33.05802 -31.99327 -30.55848 -29.89811 -29.17106 -27.31551 -24.87291 -24.55225 -23.56079 -23.16786 -22.71068 -22.49006 -21.44886 -20.85165 -19.37468 -18.56325 -17.46760 -17.29710 -16.77089 -16.24194 -16.08737 -15.34461 -15.11688 -14.87333 -14.62314 -14.52701 -14.33364 -13.96836 -13.69526 -13.60192 -13.46365 -13.12293 -12.96992 -12.78130 -12.63176 -12.36718 -12.14548 -11.93102 -11.81320 -11.67471 -11.50179 -11.34257 -11.14874 -10.97481 -10.86455 -10.84979 -10.59120 -10.48892 -10.37006 -10.08420 -10.01293 -9.91971 -9.20223 -9.18222 -8.99836 -8.87546 -8.61048 -7.07380 -6.13019 -3.13523 1.17096 2.13273 2.31105 2.93186 3.04178 3.49223 3.53847 3.59952 3.67818 4.08838 4.27303 4.53575 4.63164 4.65483 4.71376 4.73906 4.92597 4.98186 4.99536 5.03835 5.10475 5.12784 5.21078 5.28557 5.36028 5.36919 5.39974 5.46904 5.53477 5.58045 5.60963 5.65569 5.67553 5.70927 5.79002 5.85395 5.87840 5.91384 5.94807 6.06994 6.16498 6.24679 6.28483 6.33857 6.38813 6.51275 6.58553 6.78484 6.93757 7.31895 7.77331 7.89292 8.02881 8.72487 9.19142 10.05649 10.20645 11.35280 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.002958 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.791849 B = 9462.852736 C =10815.924878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 N -0.255 5.255 4 N -0.272 5.272 5 C 0.054 3.946 6 C -0.072 4.072 7 C -0.166 4.166 8 C -0.168 4.168 9 C -0.189 4.189 10 C -0.026 4.026 11 C 0.589 3.411 12 O -0.546 6.546 13 N -0.582 5.582 14 C 0.082 3.918 15 C -0.149 4.149 16 C 0.184 3.816 17 H 0.053 0.947 18 N -0.736 5.736 19 C -0.331 4.331 20 H 0.065 0.935 21 C -0.045 4.045 22 N -0.944 5.944 23 Si 1.081 2.919 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.288 1.288 27 C -0.134 4.134 28 C 0.144 3.856 29 H 0.098 0.902 30 C -0.161 4.161 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.168 0.832 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.366 0.634 47 H 0.255 0.745 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.054 0.946 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.175 4.106 -15.712 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.042 5.042 4 N -0.104 5.104 5 C -0.103 4.103 6 C -0.092 4.092 7 C -0.203 4.203 8 C -0.206 4.206 9 C -0.218 4.218 10 C -0.155 4.155 11 C 0.376 3.624 12 O -0.425 6.425 13 N -0.314 5.314 14 C -0.040 4.040 15 C -0.190 4.190 16 C 0.074 3.926 17 H 0.071 0.929 18 N -0.377 5.377 19 C -0.462 4.462 20 H 0.083 0.917 21 C -0.242 4.242 22 N -0.589 5.589 23 Si 0.912 3.088 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.214 1.214 27 C -0.173 4.173 28 C 0.042 3.958 29 H 0.116 0.884 30 C -0.219 4.219 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.185 0.815 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.073 0.927 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.416 3.265 -15.769 22.996 hybrid contribution -1.131 -0.065 -0.008 1.133 sum -17.547 3.200 -15.777 23.813 Atomic orbital electron populations 1.22086 0.93257 1.03422 1.03352 1.22057 0.96416 0.76401 1.05206 1.45768 1.44712 1.12207 1.01561 1.73047 1.18708 1.05142 1.13503 1.20997 1.03878 0.92794 0.92589 1.20013 1.03148 0.86612 0.99410 1.23023 1.00790 0.96160 1.00351 1.22994 0.94339 1.02108 1.01119 1.22297 1.07158 0.97740 0.94599 1.21405 1.10135 0.94126 0.89808 1.16936 0.80684 0.81718 0.83083 1.90771 1.39356 1.30023 1.82308 1.47925 1.34556 1.42653 1.06265 1.22563 0.87901 0.91474 1.02078 1.22644 0.94854 1.01975 0.99518 1.20145 0.86263 0.95536 0.90669 0.92904 1.42452 1.15621 1.05849 1.73800 1.20046 0.98760 0.89144 1.38252 0.91710 1.25754 0.97894 1.00999 0.99588 1.70847 1.38054 0.99475 1.50538 0.83215 0.76130 0.73614 0.75815 1.22327 1.22121 1.21423 1.22234 0.94101 0.99914 1.01090 1.21241 0.98064 0.98280 0.78263 0.88424 1.22156 1.00961 0.98294 1.00506 0.91043 0.91975 0.90213 0.88408 0.87503 0.86397 0.88299 0.87961 0.88336 0.88791 0.81467 0.88166 0.91158 0.90444 0.92458 0.80084 0.93336 0.91957 0.90482 0.91491 0.92739 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.24 37.15 0.38 -1.15 16 2 C 0.12 1.26 6.43 -4.04 -0.03 1.23 16 3 N -0.26 -3.32 3.35 -57.14 -0.19 -3.51 16 4 N -0.27 -3.61 11.90 33.64 0.40 -3.21 16 5 C 0.05 0.65 6.85 -82.47 -0.57 0.08 16 6 C -0.07 -0.67 6.33 -91.77 -0.58 -1.25 16 7 C -0.17 -1.24 10.03 -26.70 -0.27 -1.51 16 8 C -0.17 -1.31 10.24 -26.69 -0.27 -1.58 16 9 C -0.19 -2.27 7.92 -38.98 -0.31 -2.58 16 10 C -0.03 -0.36 6.52 -82.06 -0.53 -0.89 16 11 C 0.59 8.63 7.47 -12.64 -0.09 8.54 16 12 O -0.55 -8.89 14.47 5.25 0.08 -8.81 16 13 N -0.58 -8.07 2.68 -166.57 -0.45 -8.51 16 14 C 0.08 1.08 4.79 -3.71 -0.02 1.06 16 15 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 16 C 0.18 3.44 2.52 -67.89 -0.17 3.26 16 17 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 18 N -0.74 -17.73 5.12 -53.38 -0.27 -18.01 16 19 C -0.33 -8.98 9.93 -15.06 -0.15 -9.13 16 20 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 21 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 22 N -0.94 -28.85 13.70 55.49 0.76 -28.09 16 23 Si 1.08 25.49 29.92 -169.99 -5.09 20.40 16 24 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C -0.13 -2.17 5.02 -26.61 -0.13 -2.30 16 28 C 0.14 2.01 3.22 -67.60 -0.22 1.79 16 29 H 0.10 1.40 7.00 -51.93 -0.36 1.04 16 30 C -0.16 -1.96 9.02 37.16 0.34 -1.62 16 31 H 0.07 0.81 7.83 -51.93 -0.41 0.40 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.11 1.20 6.88 -51.93 -0.36 0.84 16 36 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.74 7.22 -51.93 -0.37 0.36 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.17 1.69 5.53 -52.49 -0.29 1.40 16 42 H 0.10 1.23 3.92 -51.93 -0.20 1.02 16 43 H 0.07 0.82 7.49 -51.93 -0.39 0.43 16 44 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.37 9.28 6.63 -40.82 -0.27 9.01 16 47 H 0.26 7.70 6.77 -40.82 -0.28 7.42 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.07 0.84 5.72 -51.93 -0.30 0.54 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -32.71 405.24 -9.79 -42.50 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.27 Total: 11.20 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.87 Total: -10.06 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.25 Total: -61.33 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.71 -9.79 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044638759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.831 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds