Wall clock time and date at job start Wed Apr 1 2020 04:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.46872 * 2 1 4 4 N 1.28446 * 125.18724 * 272.19001 * 3 2 1 5 5 C 1.30858 * 110.92777 * 180.27957 * 4 3 2 6 6 C 1.50698 * 126.07195 * 179.67893 * 5 4 3 7 7 C 1.53000 * 117.49790 * 163.78711 * 6 5 4 8 8 C 1.53005 * 117.49811 * 95.13197 * 6 5 4 9 9 C 1.39681 * 107.86236 * 359.71312 * 5 4 3 10 10 C 1.36598 * 125.19359 * 91.97669 * 3 2 1 11 11 C 1.47156 * 126.88303 * 0.02562 * 10 3 2 12 12 O 1.21628 * 120.00349 * 335.55014 * 11 10 3 13 13 N 1.34777 * 120.00360 * 155.55369 * 11 10 3 14 14 C 1.46929 * 120.62632 * 353.12675 * 13 11 10 15 15 C 1.53195 * 108.76630 * 233.64060 * 14 13 11 16 16 C 1.53045 * 109.30796 * 305.34496 * 15 14 13 17 17 H 1.08995 * 109.46270 * 301.36564 * 16 15 14 18 18 N 1.46504 * 109.45639 * 181.39687 * 16 15 14 19 19 C 1.36943 * 119.99866 * 84.97356 * 18 16 15 20 20 H 1.08003 * 119.99705 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00153 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99992 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47268 * 89.99564 * 23 21 19 25 25 H 1.48504 * 109.46868 * 329.99558 * 23 21 19 26 26 H 1.48503 * 109.46987 * 209.99972 * 23 21 19 27 27 C 1.53034 * 109.52754 * 61.39025 * 16 15 14 28 28 C 1.46925 * 120.63370 * 173.15360 * 13 11 10 29 29 H 1.08993 * 109.58621 * 6.57808 * 28 13 11 30 30 C 1.52999 * 109.58410 * 246.15452 * 28 13 11 31 31 H 1.09001 * 109.47657 * 298.62071 * 1 2 3 32 32 H 1.09004 * 109.47265 * 58.62252 * 1 2 3 33 33 H 1.09005 * 109.47209 * 178.62387 * 1 2 3 34 34 H 1.08996 * 109.47167 * 239.99821 * 2 1 3 35 35 H 1.09005 * 109.47463 * 119.99344 * 2 1 3 36 36 H 1.08996 * 115.55286 * 309.45720 * 6 5 4 37 37 H 1.09000 * 117.50243 * 0.02562 * 7 6 5 38 38 H 1.09004 * 117.49707 * 145.02203 * 7 6 5 39 39 H 1.09002 * 117.49920 * 214.98458 * 8 6 5 40 40 H 1.09003 * 117.49947 * 359.97015 * 8 6 5 41 41 H 1.07994 * 127.32459 * 180.02562 * 9 5 4 42 42 H 1.09000 * 109.58980 * 353.41916 * 14 13 11 43 43 H 1.09003 * 109.58587 * 113.70211 * 14 13 11 44 44 H 1.08999 * 109.48685 * 185.40577 * 15 14 13 45 45 H 1.08994 * 109.51010 * 65.30020 * 15 14 13 46 46 H 0.96998 * 120.00313 * 264.97496 * 18 16 15 47 47 H 0.97006 * 119.99950 * 359.97438 * 22 21 19 48 48 H 1.08997 * 109.50080 * 58.57644 * 27 16 15 49 49 H 1.09004 * 109.49635 * 178.67487 * 27 16 15 50 50 H 1.08999 * 109.47104 * 300.71109 * 30 28 13 51 51 H 1.09002 * 109.47314 * 60.70947 * 30 28 13 52 52 H 1.09004 * 109.47078 * 180.71083 * 30 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2271 2.0925 -1.0490 5 6 2.6670 3.2822 -0.7271 6 6 3.0272 4.3851 -1.6887 7 6 3.1548 5.8012 -1.1237 8 6 1.9542 5.4311 -1.9980 9 6 2.7443 3.3480 0.6660 10 6 2.3169 2.1107 1.1156 11 6 2.2120 1.6675 2.5149 12 8 1.4444 0.7725 2.8135 13 7 2.9665 2.2532 3.4658 14 6 4.0039 3.2284 3.1029 15 6 5.3331 2.7880 3.7242 16 6 5.1489 2.5983 5.2316 17 1 4.8073 3.5329 5.6763 18 7 6.4264 2.2094 5.8343 19 6 7.3324 3.1697 6.1980 20 1 7.1052 4.2137 6.0402 21 6 8.5425 2.8014 6.7694 22 7 8.8195 1.5291 6.9613 23 14 9.7780 4.1114 7.2662 24 1 9.5245 4.5240 8.6700 25 1 9.6383 5.2883 6.3714 26 1 11.1535 3.5633 7.1520 27 6 4.1108 1.5030 5.4862 28 6 2.7676 1.9284 4.8848 29 1 2.0514 1.1118 4.9758 30 6 2.2418 3.1604 5.6241 31 1 -0.3634 0.4922 0.9021 32 1 -0.3634 0.5351 -0.8774 33 1 -0.3634 -1.0274 -0.0247 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 3.7025 4.1028 -2.4964 37 1 2.9787 5.9351 -0.0564 38 1 3.9139 6.4507 -1.5600 39 1 1.9237 5.8370 -3.0092 40 1 0.9876 5.3211 -1.5064 41 1 3.0682 4.1862 1.2650 42 1 4.1034 3.2695 2.0182 43 1 3.7289 4.2126 3.4821 44 1 6.0896 3.5517 3.5435 45 1 5.6508 1.8470 3.2752 46 1 6.6305 1.2717 5.9756 47 1 8.1777 0.8488 6.7036 48 1 4.4401 0.5742 5.0204 49 1 3.9972 1.3519 6.5597 50 1 2.9577 3.9764 5.5254 51 1 1.2862 3.4615 5.1948 52 1 2.1069 2.9211 6.6790 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044638759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:16 Heat of formation + Delta-G solvation = 69.674603 kcal Electronic energy + Delta-G solvation = -31666.044292 eV Core-core repulsion = 27667.937492 eV Total energy + Delta-G solvation = -3998.106800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.77207 -41.32914 -39.05820 -38.11005 -36.61064 -35.31370 -34.29964 -33.61350 -31.64382 -30.86154 -30.67193 -28.63341 -26.02904 -25.59183 -25.19495 -24.34663 -23.72951 -23.12726 -22.75189 -21.81517 -20.47500 -19.68583 -19.27937 -18.55186 -17.86483 -17.25227 -16.98913 -16.49132 -16.34591 -16.09997 -15.97991 -15.59775 -15.47776 -15.23059 -15.10997 -14.89189 -14.54913 -14.39669 -14.09929 -13.90459 -13.70555 -13.20647 -13.14230 -12.98042 -12.87512 -12.75690 -12.62485 -12.37366 -12.35436 -12.27412 -12.16599 -12.05304 -11.90866 -11.84658 -11.53179 -11.49538 -11.23727 -11.13806 -11.05462 -10.86490 -10.18132 -9.86125 -9.75649 -9.09764 -8.35397 -5.29880 0.14703 1.18447 1.41094 1.60435 1.70891 1.84287 1.87542 1.96169 2.73618 2.93790 3.14300 3.36961 3.43393 3.60585 3.73104 3.77036 3.91985 3.94256 3.98407 4.00064 4.07990 4.14435 4.19073 4.20307 4.24106 4.30609 4.40699 4.45199 4.46624 4.56522 4.61914 4.66578 4.69176 4.73121 4.82367 4.86287 4.93172 4.96607 4.97279 5.07270 5.07672 5.17566 5.24000 5.25363 5.33085 5.40059 5.44418 5.52216 5.64487 5.67183 6.17438 6.51754 6.82892 7.01199 7.11575 8.01353 8.14698 9.16440 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.002958 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.791849 B = 9462.852736 C =10815.924878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.112 3.888 3 N -0.261 5.261 4 N -0.288 5.288 5 C 0.049 3.951 6 C -0.092 4.092 7 C -0.154 4.154 8 C -0.162 4.162 9 C -0.185 4.185 10 C -0.047 4.047 11 C 0.589 3.411 12 O -0.567 6.567 13 N -0.582 5.582 14 C 0.093 3.907 15 C -0.139 4.139 16 C 0.180 3.820 17 H 0.058 0.942 18 N -0.750 5.750 19 C -0.321 4.321 20 H 0.072 0.928 21 C -0.108 4.108 22 N -0.981 5.981 23 Si 1.127 2.873 24 H -0.286 1.286 25 H -0.269 1.269 26 H -0.298 1.298 27 C -0.124 4.124 28 C 0.150 3.850 29 H 0.094 0.906 30 C -0.154 4.154 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.188 0.812 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.355 0.645 47 H 0.242 0.758 48 H 0.046 0.954 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.175 6.476 -16.822 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.007 4.007 3 N -0.049 5.049 4 N -0.120 5.120 5 C -0.106 4.106 6 C -0.111 4.111 7 C -0.192 4.192 8 C -0.200 4.200 9 C -0.213 4.213 10 C -0.176 4.176 11 C 0.377 3.623 12 O -0.447 6.447 13 N -0.313 5.313 14 C -0.029 4.029 15 C -0.180 4.180 16 C 0.072 3.928 17 H 0.076 0.924 18 N -0.391 5.391 19 C -0.453 4.453 20 H 0.090 0.910 21 C -0.299 4.299 22 N -0.629 5.629 23 Si 0.953 3.047 24 H -0.213 1.213 25 H -0.194 1.194 26 H -0.225 1.225 27 C -0.163 4.163 28 C 0.047 3.953 29 H 0.112 0.888 30 C -0.212 4.212 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.204 0.796 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.187 0.813 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.475 5.662 -16.909 24.967 hybrid contribution -0.902 -0.833 0.272 1.257 sum -18.377 4.829 -16.637 25.255 Atomic orbital electron populations 1.22011 0.92329 1.04616 1.02133 1.22228 0.97168 0.75745 1.05529 1.46003 1.44721 1.12785 1.01360 1.73043 1.19302 1.05901 1.13785 1.21482 1.02989 0.92970 0.93204 1.20139 1.04564 0.86713 0.99733 1.23140 1.00794 0.94644 1.00592 1.23045 0.93833 1.01012 1.02108 1.22556 1.06288 0.97592 0.94866 1.21414 1.11604 0.95105 0.89444 1.17093 0.80389 0.81268 0.83584 1.90757 1.40303 1.30900 1.82703 1.47933 1.34557 1.42683 1.06137 1.22552 0.85567 0.92103 1.02672 1.22435 0.96824 1.00745 0.97946 1.20380 0.84608 0.96352 0.91448 0.92437 1.42708 1.17127 1.04917 1.74377 1.20399 0.98851 0.89959 1.36063 0.90981 1.27136 1.00439 1.01848 1.00478 1.70965 1.38337 1.00376 1.53251 0.82622 0.73437 0.72245 0.76417 1.21319 1.19372 1.22529 1.22098 0.94727 0.98397 1.01098 1.21173 0.96325 0.99315 0.78479 0.88759 1.22106 1.01345 0.96975 1.00800 0.93201 0.91946 0.87914 0.86637 0.88567 0.85985 0.88068 0.86298 0.86723 0.89605 0.79551 0.86827 0.88593 0.91437 0.94479 0.81348 0.94712 0.93511 0.90664 0.91554 0.91513 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.11 2.34 6.43 86.38 0.56 2.89 16 3 N -0.26 -6.64 3.35 -334.69 -1.12 -7.77 16 4 N -0.29 -7.38 11.90 -47.49 -0.57 -7.94 16 5 C 0.05 1.12 6.85 43.05 0.30 1.41 16 6 C -0.09 -1.53 6.33 -11.54 -0.07 -1.60 16 7 C -0.15 -1.87 10.03 30.62 0.31 -1.56 16 8 C -0.16 -2.14 10.24 30.62 0.31 -1.83 16 9 C -0.18 -4.10 7.92 22.66 0.18 -3.92 16 10 C -0.05 -1.24 6.52 40.78 0.27 -0.97 16 11 C 0.59 16.83 7.47 86.58 0.65 17.48 16 12 O -0.57 -18.37 14.47 -4.12 -0.06 -18.43 16 13 N -0.58 -15.37 2.68 -799.16 -2.14 -17.51 16 14 C 0.09 2.25 4.79 86.36 0.41 2.67 16 15 C -0.14 -4.55 5.66 30.67 0.17 -4.38 16 16 C 0.18 6.64 2.52 45.02 0.11 6.75 16 17 H 0.06 2.09 6.44 -2.39 -0.02 2.08 16 18 N -0.75 -36.58 5.12 -322.81 -1.65 -38.24 16 19 C -0.32 -17.35 9.93 84.03 0.83 -16.51 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 21 C -0.11 -6.18 5.50 84.86 0.47 -5.71 16 22 N -0.98 -61.29 13.70 21.65 0.30 -60.99 16 23 Si 1.13 51.01 29.92 68.60 2.05 53.07 16 24 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 C -0.12 -4.00 5.02 30.67 0.15 -3.84 16 28 C 0.15 4.01 3.22 44.98 0.14 4.16 16 29 H 0.09 2.65 7.00 -2.39 -0.02 2.63 16 30 C -0.15 -3.40 9.02 71.98 0.65 -2.75 16 31 H 0.05 1.12 7.83 -2.39 -0.02 1.10 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 2.19 6.88 -2.38 -0.02 2.18 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.18 7.22 -2.39 -0.02 1.17 16 38 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 41 H 0.19 3.22 5.53 -2.91 -0.02 3.20 16 42 H 0.11 2.52 3.92 -2.39 -0.01 2.51 16 43 H 0.10 1.91 7.49 -2.39 -0.02 1.89 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.36 18.63 6.63 -92.71 -0.61 18.02 16 47 H 0.24 15.18 6.77 -92.70 -0.63 14.55 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 49 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 50 H 0.07 1.48 5.72 -2.39 -0.01 1.46 16 51 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -71.36 405.24 3.45 -67.91 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.46 Total: 39.66 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 6.18 Total: -9.75 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -5.18 Total: -132.45 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.06 Total: -18.43 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.07 kcal Total: -71.36 3.45 -67.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044638759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.585 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds