Wall clock time and date at job start Wed Apr 1 2020 05:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47428 * 2 1 4 4 C 1.35401 * 126.44164 * 264.99973 * 3 2 1 5 5 C 1.35563 * 107.16353 * 179.97438 * 4 3 2 6 6 N 1.33102 * 108.35020 * 359.77580 * 5 4 3 7 7 C 1.31622 * 109.08970 * 0.37335 * 6 5 4 8 8 C 1.47411 * 125.85726 * 179.89000 * 7 6 5 9 9 O 1.21610 * 119.99745 * 185.69049 * 8 7 6 10 10 N 1.34779 * 120.00374 * 5.69155 * 8 7 6 11 11 C 1.44563 * 118.70942 * 356.78935 * 10 8 7 12 12 C 1.54743 * 109.59825 * 270.65626 * 11 10 8 13 13 C 1.47062 * 110.54220 * 288.36909 * 12 11 10 14 14 C 1.52831 * 114.32987 * 62.90747 * 13 12 11 15 15 C 1.50721 * 109.24476 * 275.73914 * 14 13 12 16 16 C 1.53954 * 110.94810 * 213.13287 * 15 14 13 17 17 C 1.54478 * 104.83466 * 120.02230 * 16 15 14 18 18 N 1.48177 * 104.62097 * 23.84330 * 17 16 15 19 19 C 1.36936 * 127.80282 * 140.61329 * 18 17 16 20 20 H 1.07996 * 119.99897 * 195.54250 * 19 18 17 21 21 C 1.38817 * 120.00053 * 15.54395 * 19 18 17 22 22 N 1.31614 * 119.99595 * 9.17560 * 21 19 18 23 23 Si 1.86798 * 119.99758 * 189.18391 * 21 19 18 24 24 H 1.48494 * 109.47279 * 59.99467 * 23 21 19 25 25 H 1.48502 * 109.46730 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46727 * 299.99233 * 23 21 19 27 27 C 1.48235 * 104.39250 * 320.64768 * 18 17 16 28 28 C 1.47610 * 118.71139 * 176.80578 * 10 8 7 29 29 H 1.09003 * 109.46691 * 299.99986 * 1 2 3 30 30 H 1.08999 * 109.46904 * 59.99824 * 1 2 3 31 31 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47155 * 240.00182 * 2 1 3 33 33 H 1.09002 * 109.47476 * 120.00650 * 2 1 3 34 34 H 1.08002 * 126.42229 * 359.97438 * 4 3 2 35 35 H 1.07995 * 125.82681 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.44238 * 150.61922 * 11 10 8 37 37 H 1.08996 * 109.44911 * 30.69968 * 11 10 8 38 38 H 1.08998 * 109.26492 * 168.08860 * 12 11 10 39 39 H 1.09001 * 109.26595 * 48.63577 * 12 11 10 40 40 H 1.09003 * 108.51361 * 184.16530 * 13 12 11 41 41 H 1.09007 * 108.50949 * 301.64947 * 13 12 11 42 42 H 1.08994 * 109.50334 * 35.66743 * 14 13 12 43 43 H 1.08995 * 109.50982 * 155.80689 * 14 13 12 44 44 H 1.08999 * 110.36153 * 238.86109 * 16 15 14 45 45 H 1.09003 * 110.36753 * 1.18219 * 16 15 14 46 46 H 1.08996 * 110.40309 * 142.63221 * 17 16 15 47 47 H 1.08999 * 110.40353 * 265.05468 * 17 16 15 48 48 H 0.97004 * 119.99336 * 180.02562 * 22 21 19 49 49 H 1.08997 * 110.41864 * 280.44079 * 27 18 17 50 50 H 1.08994 * 110.41805 * 157.97512 * 27 18 17 51 51 H 1.09004 * 108.97295 * 17.31440 * 28 10 8 52 52 H 1.08997 * 108.90694 * 258.58097 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3760 2.1078 -1.0851 5 6 2.7653 3.3274 -0.6393 6 7 2.6438 3.3475 0.6860 7 6 2.1981 2.1786 1.0952 8 6 1.9325 1.7973 2.4942 9 8 1.6198 0.6534 2.7637 10 7 2.0361 2.7163 3.4745 11 6 2.4776 4.0497 3.1325 12 6 4.0206 4.1245 3.2220 13 6 4.4587 4.0838 4.6252 14 6 4.1049 2.7901 5.3580 15 6 2.6941 2.8847 5.8799 16 6 2.5461 2.1202 7.2080 17 6 2.0996 3.1879 8.2312 18 7 1.4669 4.2488 7.4129 19 6 0.3445 4.9769 7.7048 20 1 -0.1537 5.5364 6.9270 21 6 -0.1529 4.9959 9.0007 22 7 0.5471 4.4675 9.9820 23 14 -1.8158 5.7713 9.3515 24 1 -2.8654 5.0644 8.5746 25 1 -2.1164 5.6628 10.8017 26 1 -1.7875 7.2027 8.9571 27 6 2.3229 4.3433 6.2063 28 6 1.6947 2.3218 4.8553 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.3551 1.7776 -2.1132 35 1 3.1116 4.1445 -1.2547 36 1 2.0386 4.7664 3.8265 37 1 2.1609 4.2876 2.1171 38 1 4.3627 5.0531 2.7652 39 1 4.4533 3.2800 2.6857 40 1 5.5407 4.2130 4.6539 41 1 4.0000 4.9185 5.1554 42 1 4.1827 1.9489 4.6694 43 1 4.7922 2.6441 6.1913 44 1 1.7877 1.3428 7.1156 45 1 3.5011 1.6865 7.5045 46 1 1.3778 2.7658 8.9304 47 1 2.9619 3.5846 8.7672 48 1 0.1993 4.4804 10.8875 49 1 3.2194 4.9249 6.4207 50 1 1.7681 4.7884 5.3804 51 1 1.6929 1.2339 4.9229 52 1 0.6976 2.6928 5.0923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045934488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:51 Heat of formation + Delta-G solvation = 82.823412 kcal Electronic energy + Delta-G solvation = -32777.046623 eV Core-core repulsion = 28779.509998 eV Total energy + Delta-G solvation = -3997.536625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52188 -40.30733 -38.34964 -36.18918 -35.10468 -33.58128 -32.84816 -30.94063 -30.40602 -29.76091 -28.51973 -26.97155 -25.88944 -24.87886 -24.33139 -23.40417 -22.11885 -21.72771 -20.98493 -19.88638 -19.02490 -18.01961 -17.24916 -16.90384 -16.47470 -16.00388 -15.83823 -15.21625 -14.97112 -14.75613 -14.51409 -14.13243 -14.05782 -13.89792 -13.70410 -13.52199 -13.49075 -12.97546 -12.85745 -12.72784 -12.35672 -12.25052 -12.02434 -11.63790 -11.53771 -11.47874 -11.18918 -10.86662 -10.77225 -10.75076 -10.52792 -10.40544 -10.23153 -10.05566 -10.00708 -9.81530 -9.62794 -9.58293 -9.49327 -9.35780 -8.76493 -8.56936 -8.30499 -6.76472 -5.73002 -3.06680 1.28222 2.28264 2.50148 3.23485 3.37884 3.41846 3.46714 3.47520 4.21847 4.37838 4.49869 4.51585 4.70365 4.97308 4.98894 5.08444 5.12967 5.20248 5.21604 5.33781 5.37347 5.45101 5.45937 5.53913 5.60999 5.73102 5.79611 5.86390 5.91872 5.98214 6.03455 6.10799 6.16313 6.26327 6.30897 6.34063 6.36652 6.42987 6.49102 6.59253 6.62998 6.65211 6.78194 6.84801 6.87151 6.96821 7.03525 7.44691 7.46728 7.61894 7.71098 7.78650 8.19574 8.28893 9.17595 9.80926 10.59114 11.40719 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.003151 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.392017 B = 8882.814715 C = 9356.752138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.414 5.414 4 C -0.035 4.035 5 C -0.034 4.034 6 N -0.436 5.436 7 C 0.152 3.848 8 C 0.593 3.407 9 O -0.551 6.551 10 N -0.567 5.567 11 C 0.075 3.925 12 C -0.110 4.110 13 C -0.142 4.142 14 C -0.094 4.094 15 C -0.081 4.081 16 C -0.132 4.132 17 C 0.157 3.843 18 N -0.596 5.596 19 C -0.224 4.224 20 H 0.074 0.926 21 C -0.005 4.005 22 N -0.915 5.915 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.131 3.869 28 C 0.130 3.870 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.018 0.982 48 H 0.253 0.747 49 H 0.033 0.967 50 H 0.050 0.950 51 H 0.084 0.916 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -6.899 -22.360 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.095 5.095 4 C -0.173 4.173 5 C -0.186 4.186 6 N -0.157 5.157 7 C -0.107 4.107 8 C 0.379 3.621 9 O -0.429 6.429 10 N -0.296 5.296 11 C -0.047 4.047 12 C -0.149 4.149 13 C -0.179 4.179 14 C -0.131 4.131 15 C -0.084 4.084 16 C -0.171 4.171 17 C 0.032 3.968 18 N -0.320 5.320 19 C -0.353 4.353 20 H 0.091 0.909 21 C -0.202 4.202 22 N -0.562 5.562 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.005 3.995 28 C 0.009 3.991 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.196 0.804 35 H 0.193 0.807 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.037 0.963 48 H 0.063 0.937 49 H 0.050 0.950 50 H 0.069 0.931 51 H 0.103 0.897 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.806 -6.928 -21.387 23.219 hybrid contribution -0.865 -0.190 -0.445 0.991 sum 4.941 -7.118 -21.832 23.489 Atomic orbital electron populations 1.22065 0.93565 1.03417 1.03019 1.22140 0.96316 0.78878 1.05386 1.45272 1.45188 1.12876 1.06138 1.22869 1.07209 0.94240 0.92994 1.22554 1.07061 0.97386 0.91635 1.70371 1.15876 1.17890 1.11611 1.22782 1.09443 0.88187 0.90312 1.16678 0.78218 0.85059 0.82179 1.90758 1.50243 1.19023 1.82880 1.47489 1.63326 1.11517 1.07305 1.22581 0.94874 0.82586 1.04706 1.20918 0.95805 1.01787 0.96381 1.20852 1.00568 0.99843 0.96643 1.21086 0.95569 0.97362 0.99128 1.21379 0.93840 0.98666 0.94489 1.22844 1.00082 0.98988 0.95228 1.21539 0.96241 0.86957 0.92103 1.45015 1.27618 1.40853 1.18522 1.18921 0.99802 1.23469 0.93074 0.90868 1.24858 0.99085 1.00999 0.95305 1.69899 1.36972 1.49855 0.99446 0.86256 0.83863 0.79027 0.76951 1.21176 1.21638 1.21075 1.22150 0.93825 0.92429 0.91110 1.22163 0.98604 1.00636 0.77666 0.91318 0.92329 0.90325 0.89143 0.86974 0.80379 0.80704 0.90086 0.85774 0.91336 0.92853 0.93231 0.89937 0.92825 0.91991 0.92444 0.92449 0.89789 0.96350 0.93665 0.95009 0.93144 0.89723 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.09 0.82 6.25 -4.05 -0.03 0.80 16 3 N -0.41 -4.46 2.76 -114.59 -0.32 -4.77 16 4 C -0.04 -0.30 11.53 -16.93 -0.20 -0.49 16 5 C -0.03 -0.33 11.85 -17.96 -0.21 -0.54 16 6 N -0.44 -5.52 7.01 -11.26 -0.08 -5.60 16 7 C 0.15 2.06 7.48 -154.52 -1.16 0.91 16 8 C 0.59 9.32 7.61 -12.53 -0.10 9.22 16 9 O -0.55 -9.46 14.05 5.27 0.07 -9.38 16 10 N -0.57 -8.88 2.28 -173.99 -0.40 -9.28 16 11 C 0.08 1.08 4.92 -4.16 -0.02 1.06 16 12 C -0.11 -1.46 5.22 -28.66 -0.15 -1.61 16 13 C -0.14 -2.00 4.94 -29.67 -0.15 -2.14 16 14 C -0.09 -1.44 4.89 -27.96 -0.14 -1.58 16 15 C -0.08 -1.43 0.68 -154.21 -0.10 -1.53 16 16 C -0.13 -2.51 6.20 -25.46 -0.16 -2.67 16 17 C 0.16 3.77 5.90 -2.34 -0.01 3.75 16 18 N -0.60 -14.98 3.38 -168.94 -0.57 -15.55 16 19 C -0.22 -6.19 10.35 -15.06 -0.16 -6.35 16 20 H 0.07 1.96 7.84 -52.49 -0.41 1.55 16 21 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 22 N -0.92 -26.87 10.87 55.49 0.60 -26.27 16 23 Si 0.91 22.07 29.56 -169.99 -5.03 17.04 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 2.64 4.43 -2.56 -0.01 2.63 16 28 C 0.13 2.26 4.70 -3.02 -0.01 2.24 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.11 1.19 6.52 -51.93 -0.34 0.85 16 34 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.08 1.24 5.14 -51.93 -0.27 0.97 16 37 H 0.13 1.75 4.71 -53.93 -0.25 1.50 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.75 8.04 -51.93 -0.42 0.33 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.26 4.60 -51.93 -0.24 1.02 16 42 H 0.05 0.84 7.55 -51.93 -0.39 0.45 16 43 H 0.06 0.94 7.42 -51.93 -0.39 0.56 16 44 H 0.06 1.08 7.50 -51.93 -0.39 0.69 16 45 H 0.06 0.98 7.34 -51.93 -0.38 0.60 16 46 H 0.08 2.25 6.52 -51.93 -0.34 1.91 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.03 0.66 5.95 -51.93 -0.31 0.35 16 50 H 0.05 1.00 5.10 -51.93 -0.26 0.74 16 51 H 0.08 1.51 6.61 -51.93 -0.34 1.17 16 52 H 0.07 1.45 7.95 -51.93 -0.41 1.04 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -31.80 384.02 -10.32 -42.12 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.08 Total: 3.45 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.31 Total: 2.46 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.76 Total: -61.47 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.80 -10.32 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045934488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.943 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds