Wall clock time and date at job start Wed Apr 1 2020 05:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47428 * 2 1 4 4 C 1.35401 * 126.44164 * 264.99973 * 3 2 1 5 5 C 1.35563 * 107.16353 * 179.97438 * 4 3 2 6 6 N 1.33102 * 108.35020 * 359.77580 * 5 4 3 7 7 C 1.31622 * 109.08970 * 0.37335 * 6 5 4 8 8 C 1.47411 * 125.85726 * 179.89000 * 7 6 5 9 9 O 1.21610 * 119.99745 * 185.69049 * 8 7 6 10 10 N 1.34779 * 120.00374 * 5.69155 * 8 7 6 11 11 C 1.44563 * 118.70942 * 356.78935 * 10 8 7 12 12 C 1.54743 * 109.59825 * 270.65626 * 11 10 8 13 13 C 1.47062 * 110.54220 * 288.36909 * 12 11 10 14 14 C 1.52831 * 114.32987 * 62.90747 * 13 12 11 15 15 C 1.50721 * 109.24476 * 275.73914 * 14 13 12 16 16 C 1.53954 * 110.94810 * 213.13287 * 15 14 13 17 17 C 1.54478 * 104.83466 * 120.02230 * 16 15 14 18 18 N 1.48177 * 104.62097 * 23.84330 * 17 16 15 19 19 C 1.36936 * 127.80282 * 140.61329 * 18 17 16 20 20 H 1.07996 * 119.99897 * 195.54250 * 19 18 17 21 21 C 1.38817 * 120.00053 * 15.54395 * 19 18 17 22 22 N 1.31614 * 119.99595 * 9.17560 * 21 19 18 23 23 Si 1.86798 * 119.99758 * 189.18391 * 21 19 18 24 24 H 1.48494 * 109.47279 * 59.99467 * 23 21 19 25 25 H 1.48502 * 109.46730 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46727 * 299.99233 * 23 21 19 27 27 C 1.48235 * 104.39250 * 320.64768 * 18 17 16 28 28 C 1.47610 * 118.71139 * 176.80578 * 10 8 7 29 29 H 1.09003 * 109.46691 * 299.99986 * 1 2 3 30 30 H 1.08999 * 109.46904 * 59.99824 * 1 2 3 31 31 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47155 * 240.00182 * 2 1 3 33 33 H 1.09002 * 109.47476 * 120.00650 * 2 1 3 34 34 H 1.08002 * 126.42229 * 359.97438 * 4 3 2 35 35 H 1.07995 * 125.82681 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.44238 * 150.61922 * 11 10 8 37 37 H 1.08996 * 109.44911 * 30.69968 * 11 10 8 38 38 H 1.08998 * 109.26492 * 168.08860 * 12 11 10 39 39 H 1.09001 * 109.26595 * 48.63577 * 12 11 10 40 40 H 1.09003 * 108.51361 * 184.16530 * 13 12 11 41 41 H 1.09007 * 108.50949 * 301.64947 * 13 12 11 42 42 H 1.08994 * 109.50334 * 35.66743 * 14 13 12 43 43 H 1.08995 * 109.50982 * 155.80689 * 14 13 12 44 44 H 1.08999 * 110.36153 * 238.86109 * 16 15 14 45 45 H 1.09003 * 110.36753 * 1.18219 * 16 15 14 46 46 H 1.08996 * 110.40309 * 142.63221 * 17 16 15 47 47 H 1.08999 * 110.40353 * 265.05468 * 17 16 15 48 48 H 0.97004 * 119.99336 * 180.02562 * 22 21 19 49 49 H 1.08997 * 110.41864 * 280.44079 * 27 18 17 50 50 H 1.08994 * 110.41805 * 157.97512 * 27 18 17 51 51 H 1.09004 * 108.97295 * 17.31440 * 28 10 8 52 52 H 1.08997 * 108.90694 * 258.58097 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3760 2.1078 -1.0851 5 6 2.7653 3.3274 -0.6393 6 7 2.6438 3.3475 0.6860 7 6 2.1981 2.1786 1.0952 8 6 1.9325 1.7973 2.4942 9 8 1.6198 0.6534 2.7637 10 7 2.0361 2.7163 3.4745 11 6 2.4776 4.0497 3.1325 12 6 4.0206 4.1245 3.2220 13 6 4.4587 4.0838 4.6252 14 6 4.1049 2.7901 5.3580 15 6 2.6941 2.8847 5.8799 16 6 2.5461 2.1202 7.2080 17 6 2.0996 3.1879 8.2312 18 7 1.4669 4.2488 7.4129 19 6 0.3445 4.9769 7.7048 20 1 -0.1537 5.5364 6.9270 21 6 -0.1529 4.9959 9.0007 22 7 0.5471 4.4675 9.9820 23 14 -1.8158 5.7713 9.3515 24 1 -2.8654 5.0644 8.5746 25 1 -2.1164 5.6628 10.8017 26 1 -1.7875 7.2027 8.9571 27 6 2.3229 4.3433 6.2063 28 6 1.6947 2.3218 4.8553 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.3551 1.7776 -2.1132 35 1 3.1116 4.1445 -1.2547 36 1 2.0386 4.7664 3.8265 37 1 2.1609 4.2876 2.1171 38 1 4.3627 5.0531 2.7652 39 1 4.4533 3.2800 2.6857 40 1 5.5407 4.2130 4.6539 41 1 4.0000 4.9185 5.1554 42 1 4.1827 1.9489 4.6694 43 1 4.7922 2.6441 6.1913 44 1 1.7877 1.3428 7.1156 45 1 3.5011 1.6865 7.5045 46 1 1.3778 2.7658 8.9304 47 1 2.9619 3.5846 8.7672 48 1 0.1993 4.4804 10.8875 49 1 3.2194 4.9249 6.4207 50 1 1.7681 4.7884 5.3804 51 1 1.6929 1.2339 4.9229 52 1 0.6976 2.6928 5.0923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045934488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:50 Heat of formation + Delta-G solvation = 66.178882 kcal Electronic energy + Delta-G solvation = -32777.768384 eV Core-core repulsion = 28779.509998 eV Total energy + Delta-G solvation = -3998.258386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.35191 -41.62152 -39.70525 -37.56227 -36.02765 -34.99992 -34.41591 -32.55554 -31.39037 -30.73193 -30.11760 -28.33863 -27.50014 -26.39586 -25.26970 -24.52375 -23.54394 -22.73657 -22.14377 -21.42515 -20.05003 -19.47007 -18.77812 -18.21566 -17.65647 -17.21908 -16.97612 -16.64675 -16.35351 -16.03105 -15.68312 -15.52135 -15.04522 -15.01063 -14.91306 -14.77866 -14.68142 -14.52214 -13.94150 -13.73486 -13.58571 -13.45458 -13.22640 -13.13361 -13.01183 -12.81115 -12.65176 -12.52268 -12.38301 -12.11958 -12.07304 -11.95230 -11.80144 -11.55603 -11.44046 -11.14278 -11.09027 -11.00139 -10.82752 -10.61930 -10.44871 -9.70732 -9.38087 -8.81478 -7.87216 -5.22115 0.36183 1.41704 1.45663 1.48748 1.54874 1.68280 2.19621 2.37223 2.50145 3.21458 3.31307 3.60146 3.69498 3.75946 3.81777 3.83947 4.03001 4.04178 4.10114 4.16768 4.28697 4.34268 4.43195 4.46322 4.50981 4.55388 4.64105 4.67633 4.71191 4.78302 4.79869 4.85345 4.88220 4.91077 5.05524 5.11142 5.14399 5.17765 5.22327 5.33315 5.37782 5.39126 5.43381 5.46748 5.54597 5.63386 5.64952 5.74834 5.85362 5.99704 6.23666 6.31478 6.79820 7.05619 7.08556 7.73559 8.52738 9.25874 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.003151 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.392017 B = 8882.814715 C = 9356.752138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.414 5.414 4 C -0.008 4.008 5 C -0.049 4.049 6 N -0.446 5.446 7 C 0.108 3.892 8 C 0.590 3.410 9 O -0.575 6.575 10 N -0.571 5.571 11 C 0.079 3.921 12 C -0.099 4.099 13 C -0.138 4.138 14 C -0.088 4.088 15 C -0.067 4.067 16 C -0.121 4.121 17 C 0.163 3.837 18 N -0.619 5.619 19 C -0.235 4.235 20 H 0.076 0.924 21 C -0.061 4.061 22 N -0.946 5.946 23 Si 0.974 3.026 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.275 1.275 27 C 0.135 3.865 28 C 0.142 3.858 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.000 1.000 48 H 0.248 0.752 49 H 0.036 0.964 50 H 0.054 0.946 51 H 0.078 0.922 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -6.918 -26.164 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.147 4.147 5 C -0.202 4.202 6 N -0.169 5.169 7 C -0.148 4.148 8 C 0.377 3.623 9 O -0.456 6.456 10 N -0.300 5.300 11 C -0.044 4.044 12 C -0.137 4.137 13 C -0.175 4.175 14 C -0.126 4.126 15 C -0.070 4.070 16 C -0.160 4.160 17 C 0.037 3.963 18 N -0.344 5.344 19 C -0.364 4.364 20 H 0.094 0.906 21 C -0.255 4.255 22 N -0.594 5.594 23 Si 0.802 3.198 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.201 1.201 27 C 0.010 3.990 28 C 0.020 3.980 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.242 0.758 35 H 0.221 0.779 36 H 0.085 0.915 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.018 0.982 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.096 0.904 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.760 -6.946 -25.214 27.013 hybrid contribution -1.138 -0.193 0.567 1.286 sum 5.622 -7.139 -24.647 26.268 Atomic orbital electron populations 1.22017 0.93524 1.04153 1.01755 1.22279 0.96300 0.78140 1.06198 1.45483 1.44529 1.13390 1.06016 1.23661 1.03763 0.93233 0.94062 1.23160 1.07283 0.98998 0.90720 1.70213 1.15581 1.17645 1.13477 1.22234 1.13153 0.89600 0.89833 1.17001 0.77413 0.84583 0.83276 1.90730 1.51304 1.19964 1.83577 1.47446 1.63839 1.12194 1.06541 1.22627 0.95734 0.81461 1.04540 1.20826 0.94617 1.02479 0.95825 1.20798 1.01709 0.98239 0.96719 1.21041 0.93725 0.98319 0.99476 1.21232 0.95535 0.96387 0.93808 1.22727 1.01135 0.97585 0.94583 1.21357 0.94447 0.87874 0.92649 1.45282 1.27934 1.41129 1.20011 1.19278 1.00734 1.23111 0.93274 0.90602 1.25648 1.02492 1.02160 0.95214 1.70090 1.38473 1.51457 0.99422 0.85233 0.79771 0.78515 0.76309 1.20675 1.22018 1.20054 1.22280 0.93116 0.94219 0.89347 1.21814 0.97130 0.99976 0.79088 0.95064 0.90907 0.88676 0.85045 0.89397 0.75838 0.77922 0.91495 0.85189 0.89507 0.93255 0.91302 0.91182 0.92743 0.91281 0.92522 0.89975 0.93320 0.98229 0.94297 0.94614 0.92835 0.90362 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.24 71.98 0.74 -1.67 16 2 C 0.09 1.40 6.25 86.38 0.54 1.94 16 3 N -0.41 -7.92 2.76 -516.44 -1.42 -9.34 16 4 C -0.01 -0.11 11.53 83.52 0.96 0.86 16 5 C -0.05 -0.78 11.85 83.88 0.99 0.21 16 6 N -0.45 -10.46 7.01 -189.53 -1.33 -11.79 16 7 C 0.11 2.83 7.48 136.28 1.02 3.85 16 8 C 0.59 18.79 7.61 86.66 0.66 19.45 16 9 O -0.58 -20.42 14.05 -4.06 -0.06 -20.48 16 10 N -0.57 -18.16 2.28 -822.64 -1.87 -20.04 16 11 C 0.08 2.22 4.92 87.34 0.43 2.65 16 12 C -0.10 -2.45 5.22 29.34 0.15 -2.30 16 13 C -0.14 -3.64 4.94 28.69 0.14 -3.50 16 14 C -0.09 -2.60 4.89 29.80 0.15 -2.46 16 15 C -0.07 -2.39 0.68 -51.99 -0.04 -2.42 16 16 C -0.12 -4.69 6.20 31.42 0.19 -4.50 16 17 C 0.16 8.11 5.90 86.56 0.51 8.62 16 18 N -0.62 -32.18 3.38 -688.42 -2.33 -34.51 16 19 C -0.23 -13.34 10.35 84.03 0.87 -12.47 16 20 H 0.08 4.15 7.84 -2.91 -0.02 4.13 16 21 C -0.06 -3.54 5.40 84.86 0.46 -3.09 16 22 N -0.95 -57.68 10.87 21.65 0.24 -57.44 16 23 Si 0.97 46.42 29.56 68.60 2.03 48.45 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 C 0.13 5.55 4.43 86.39 0.38 5.94 16 28 C 0.14 5.09 4.70 86.43 0.41 5.49 16 29 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.13 0.93 8.13 -2.38 -0.02 0.91 16 33 H 0.09 1.82 6.52 -2.39 -0.02 1.81 16 34 H 0.23 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.07 2.06 5.14 -2.39 -0.01 2.04 16 37 H 0.13 3.58 4.71 -6.33 -0.03 3.55 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.29 8.04 -2.39 -0.02 1.27 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 2.06 4.60 -2.38 -0.01 2.05 16 42 H 0.05 1.64 7.55 -2.39 -0.02 1.62 16 43 H 0.07 1.97 7.42 -2.39 -0.02 1.95 16 44 H 0.06 2.20 7.50 -2.39 -0.02 2.18 16 45 H 0.08 2.77 7.34 -2.39 -0.02 2.75 16 46 H 0.05 2.75 6.52 -2.39 -0.02 2.74 16 47 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 48 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 49 H 0.04 1.48 5.95 -2.39 -0.01 1.47 16 50 H 0.05 2.17 5.10 -2.39 -0.01 2.16 16 51 H 0.08 2.90 6.61 -2.38 -0.02 2.89 16 52 H 0.05 1.93 7.95 -2.39 -0.02 1.91 16 Total: -1.00 -72.93 384.02 4.73 -68.20 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.91 Total: 20.35 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 8.57 Total: 16.60 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -6.72 Total: -133.13 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.48 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -72.93 4.73 -68.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045934488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.377 kcal (2) G-P(sol) polarization free energy of solvation -72.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds