Wall clock time and date at job start Wed Apr 1 2020 05:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47495 * 2 1 4 4 C 1.35856 * 126.13194 * 89.97559 * 3 2 1 5 5 N 1.30168 * 109.00248 * 180.02562 * 4 3 2 6 6 C 1.35760 * 108.86448 * 0.02562 * 5 4 3 7 7 C 1.47332 * 126.23085 * 180.02562 * 6 5 4 8 8 O 1.21623 * 119.99660 * 186.48383 * 7 6 5 9 9 N 1.34903 * 120.00292 * 6.48143 * 7 6 5 10 10 C 1.43400 * 120.43670 * 356.89840 * 9 7 6 11 11 C 1.54768 * 116.10167 * 271.33982 * 10 9 7 12 12 C 1.54855 * 110.43372 * 321.17101 * 11 10 9 13 13 C 1.49020 * 112.11474 * 320.06007 * 12 11 10 14 14 C 1.51981 * 109.84368 * 95.00774 * 13 12 11 15 15 C 1.56811 * 106.55683 * 155.26719 * 14 13 12 16 16 C 1.54413 * 102.31091 * 283.33724 * 15 14 13 17 17 N 1.47140 * 107.06368 * 337.60841 * 16 15 14 18 18 C 1.36647 * 126.22952 * 175.16540 * 17 16 15 19 19 H 1.07999 * 120.00488 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99804 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99814 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00070 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47394 * 59.99715 * 22 20 18 24 24 H 1.48499 * 109.47408 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47045 * 299.99956 * 22 20 18 26 26 C 1.47670 * 107.68069 * 355.13534 * 17 16 15 27 27 C 1.46199 * 115.58839 * 277.61534 * 14 13 12 28 28 C 1.35377 * 126.13641 * 270.33363 * 3 2 1 29 29 H 1.08995 * 109.47673 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47036 * 299.99837 * 1 2 3 31 31 H 1.08998 * 109.47372 * 59.99468 * 1 2 3 32 32 H 1.09002 * 109.46596 * 239.99857 * 2 1 3 33 33 H 1.08998 * 109.46923 * 120.00820 * 2 1 3 34 34 H 1.07996 * 125.49724 * 0.02562 * 4 3 2 35 35 H 1.08913 * 108.08070 * 32.93590 * 10 9 7 36 36 H 1.08860 * 108.23589 * 149.81353 * 10 9 7 37 37 H 1.09144 * 109.32142 * 81.17048 * 11 10 9 38 38 H 1.08993 * 109.60555 * 200.70550 * 11 10 9 39 39 H 1.07963 * 109.41514 * 85.48649 * 12 11 10 40 40 H 1.10439 * 107.23154 * 201.89763 * 12 11 10 41 41 H 1.09741 * 110.15927 * 334.40357 * 13 12 11 42 42 H 1.09697 * 109.97140 * 215.97961 * 13 12 11 43 43 H 1.08666 * 109.95940 * 165.05799 * 15 14 13 44 44 H 1.08674 * 109.94588 * 41.32057 * 15 14 13 45 45 H 1.08950 * 110.00301 * 218.31818 * 16 15 14 46 46 H 1.08998 * 109.92837 * 97.06527 * 16 15 14 47 47 H 0.97000 * 119.99386 * 180.02562 * 21 20 18 48 48 H 1.07728 * 112.06326 * 153.61450 * 26 17 16 49 49 H 1.09932 * 108.95921 * 274.36251 * 26 17 16 50 50 H 1.09280 * 109.51451 * 173.92459 * 27 14 13 51 51 H 1.09218 * 109.83749 * 293.53383 * 27 14 13 52 52 H 1.08000 * 126.56779 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2850 2.1365 1.0973 5 7 2.6994 3.3094 0.7139 6 6 2.7127 3.3483 -0.6431 7 6 3.1176 4.4931 -1.4775 8 8 2.9746 4.4465 -2.6844 9 7 3.6468 5.5929 -0.9029 10 6 3.7585 5.6848 0.5238 11 6 2.5351 6.2745 1.2660 12 6 1.9249 7.4455 0.4570 13 6 2.9725 8.3069 -0.1604 14 6 3.2290 7.8620 -1.5909 15 6 3.7968 9.1100 -2.3519 16 6 2.5276 9.9571 -2.5881 17 7 1.3781 9.0411 -2.5193 18 6 0.0595 9.3939 -2.5817 19 1 -0.7062 8.6346 -2.5213 20 6 -0.2961 10.7284 -2.7228 21 7 0.6370 11.6538 -2.7960 22 14 -2.0986 11.2106 -2.8089 23 1 -2.7846 10.7865 -1.5619 24 1 -2.2104 12.6838 -2.9581 25 1 -2.7340 10.5449 -3.9743 26 6 1.9056 7.6699 -2.3712 27 6 4.1400 6.7292 -1.7461 28 6 2.2785 2.1359 -1.0933 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 2.1715 1.8157 2.1222 35 1 3.9410 4.6844 0.9137 36 1 4.6234 6.3027 0.7586 37 1 1.7799 5.4967 1.3922 38 1 2.8421 6.6362 2.2473 39 1 1.2308 7.0548 -0.2719 40 1 1.3498 8.0678 1.1654 41 1 3.9045 8.2402 0.4151 42 1 2.6501 9.3553 -0.1491 43 1 4.2434 8.7993 -3.2925 44 1 4.5056 9.6386 -1.7201 45 1 2.5692 10.4245 -3.5714 46 1 2.4419 10.7214 -1.8157 47 1 0.3885 12.5863 -2.8942 48 1 1.2062 7.0187 -1.8739 49 1 2.1278 7.2630 -3.3680 50 1 4.1691 6.4253 -2.7954 51 1 5.1458 7.0167 -1.4322 52 1 2.1662 1.8351 -2.1245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045979603.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:54 Heat of formation + Delta-G solvation = 54.732221 kcal Electronic energy + Delta-G solvation = -32539.312651 eV Core-core repulsion = 28540.557900 eV Total energy + Delta-G solvation = -3998.754751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.14836 -41.53774 -39.60550 -37.36606 -35.92344 -34.90077 -34.19462 -32.41188 -31.23314 -30.70639 -30.22102 -28.20248 -27.55771 -25.99411 -25.54014 -24.56316 -23.57179 -22.07978 -21.78213 -21.60881 -19.85107 -19.68993 -18.88546 -18.15048 -17.48857 -16.97569 -16.74269 -16.60408 -16.39979 -16.12131 -15.46480 -15.37916 -15.18596 -14.92448 -14.85325 -14.76072 -14.58068 -14.28648 -13.96833 -13.75868 -13.57582 -13.42576 -13.08436 -12.99793 -12.93981 -12.85940 -12.75564 -12.45653 -12.18544 -12.07552 -12.06131 -11.95902 -11.80921 -11.57380 -11.30334 -11.12950 -11.05527 -10.97641 -10.69748 -10.67825 -10.42066 -9.70235 -9.33203 -8.87697 -7.84511 -5.17919 0.64149 1.40375 1.44393 1.50738 1.53478 1.76066 2.18842 2.48141 2.60446 3.31830 3.45462 3.59742 3.73610 3.82011 3.85992 3.94793 4.01327 4.12447 4.14929 4.24883 4.31541 4.32649 4.44160 4.47773 4.53953 4.60924 4.68224 4.73166 4.74632 4.79150 4.84319 4.85747 4.89796 4.97221 5.02039 5.15203 5.18494 5.19510 5.24283 5.24549 5.37745 5.39112 5.43864 5.51378 5.65311 5.67819 5.70996 5.79742 5.83333 6.19719 6.23172 6.62690 6.91153 7.10776 7.32066 7.76959 8.46811 9.25823 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.003210 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.199078 B = 8721.379729 C = 9613.074269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.449 5.449 4 C 0.193 3.807 5 N -0.478 5.478 6 C -0.089 4.089 7 C 0.590 3.410 8 O -0.589 6.589 9 N -0.585 5.585 10 C 0.102 3.898 11 C -0.110 4.110 12 C -0.111 4.111 13 C -0.074 4.074 14 C -0.075 4.075 15 C -0.127 4.127 16 C 0.189 3.811 17 N -0.617 5.617 18 C -0.239 4.239 19 H 0.068 0.932 20 C -0.064 4.064 21 N -0.948 5.948 22 Si 0.975 3.025 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.160 3.840 27 C 0.141 3.859 28 C 0.034 3.966 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.130 0.870 34 H 0.250 0.750 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.067 0.933 44 H 0.092 0.908 45 H -0.007 1.007 46 H 0.024 0.976 47 H 0.247 0.753 48 H 0.031 0.969 49 H -0.011 1.011 50 H 0.073 0.927 51 H 0.109 0.891 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -26.484 13.242 30.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.130 5.130 4 C -0.091 4.091 5 N -0.197 5.197 6 C -0.216 4.216 7 C 0.380 3.620 8 O -0.471 6.471 9 N -0.314 5.314 10 C -0.021 4.021 11 C -0.148 4.148 12 C -0.149 4.149 13 C -0.112 4.112 14 C -0.077 4.077 15 C -0.165 4.165 16 C 0.064 3.936 17 N -0.343 5.343 18 C -0.368 4.368 19 H 0.086 0.914 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.803 3.197 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.207 1.207 26 C 0.035 3.965 27 C 0.020 3.980 28 C -0.107 4.107 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.266 0.734 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.011 0.989 46 H 0.042 0.958 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.007 0.993 50 H 0.092 0.908 51 H 0.127 0.873 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.203 -25.794 13.126 30.082 hybrid contribution -1.839 0.427 -1.228 2.252 sum 6.364 -25.367 11.898 28.733 Atomic orbital electron populations 1.22175 0.94003 1.04309 1.02282 1.22301 0.95574 0.77372 1.07217 1.45757 1.47420 1.14133 1.05677 1.26104 1.01113 0.86757 0.95105 1.70609 1.19596 1.20236 1.09261 1.20349 1.14434 0.95452 0.91392 1.17534 0.76234 0.82134 0.86101 1.90750 1.57610 1.82818 1.15873 1.47751 1.59778 1.15897 1.08015 1.21504 0.97502 1.04707 0.78416 1.22469 0.98201 0.95856 0.98295 1.21105 0.97963 0.97136 0.98685 1.20459 0.99356 0.98105 0.93257 1.20811 0.95189 0.95288 0.96401 1.23269 0.97301 0.95950 1.00021 1.20876 0.84687 0.91086 0.96952 1.44684 1.01811 1.02194 1.85563 1.19224 0.82949 0.92178 1.42448 0.91439 1.25559 1.01749 0.95578 1.02763 1.70162 1.32019 0.99784 1.57801 0.85204 0.79763 0.76652 0.78047 1.20400 1.21453 1.20740 1.21568 0.93917 0.86212 0.94798 1.20794 0.97166 0.83873 0.96187 1.22642 1.02108 0.91687 0.94280 0.88277 0.92070 0.93824 0.87595 0.85232 0.73421 0.86634 0.90566 0.92553 0.89512 0.94841 0.94850 0.89587 0.94336 0.91418 0.88903 0.98871 0.95778 0.94377 0.95114 0.99324 0.90821 0.87260 0.79470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 71.98 0.74 -0.21 16 2 C 0.10 0.39 6.84 86.38 0.59 0.98 16 3 N -0.45 -5.83 2.73 -528.40 -1.44 -7.27 16 4 C 0.19 2.65 12.55 180.10 2.26 4.91 16 5 N -0.48 -10.61 6.81 -188.81 -1.29 -11.89 16 6 C -0.09 -2.43 6.63 40.51 0.27 -2.16 16 7 C 0.59 20.34 7.69 86.62 0.67 21.00 16 8 O -0.59 -24.45 16.38 -4.10 -0.07 -24.51 16 9 N -0.59 -18.09 2.51 -832.42 -2.09 -20.17 16 10 C 0.10 2.57 4.46 87.56 0.39 2.96 16 11 C -0.11 -2.94 6.25 31.83 0.20 -2.74 16 12 C -0.11 -3.98 5.25 29.96 0.16 -3.83 16 13 C -0.07 -2.65 4.05 28.99 0.12 -2.53 16 14 C -0.07 -2.81 0.52 -52.65 -0.03 -2.84 16 15 C -0.13 -4.94 5.69 32.41 0.18 -4.75 16 16 C 0.19 10.00 4.60 86.74 0.40 10.40 16 17 N -0.62 -34.94 3.17 -691.83 -2.19 -37.13 16 18 C -0.24 -14.67 10.29 84.08 0.87 -13.80 16 19 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 20 C -0.06 -3.86 5.49 84.86 0.47 -3.40 16 21 N -0.95 -59.93 10.39 21.65 0.22 -59.70 16 22 Si 0.98 48.87 29.55 68.60 2.03 50.90 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 26 C 0.16 7.82 5.55 86.78 0.48 8.30 16 27 C 0.14 4.47 4.65 83.63 0.39 4.86 16 28 C 0.03 0.72 11.27 83.72 0.94 1.66 16 29 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.25 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.12 2.77 4.99 -2.43 -0.01 2.75 16 36 H 0.08 1.61 7.22 -2.46 -0.02 1.60 16 37 H 0.06 1.60 7.20 -2.31 -0.02 1.59 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.03 1.45 5.18 -2.93 -0.02 1.43 16 40 H 0.03 1.22 8.25 -1.61 -0.01 1.21 16 41 H 0.09 2.42 6.90 -1.99 -0.01 2.41 16 42 H 0.04 1.64 6.74 -2.02 -0.01 1.63 16 43 H 0.07 2.49 8.00 -2.56 -0.02 2.47 16 44 H 0.09 3.06 7.95 -2.56 -0.02 3.04 16 45 H -0.01 -0.41 7.74 -2.41 -0.02 -0.43 16 46 H 0.02 1.40 6.75 -2.39 -0.02 1.38 16 47 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 48 H 0.03 1.59 5.84 -3.05 -0.02 1.57 16 49 H -0.01 -0.58 8.00 -1.89 -0.02 -0.59 16 50 H 0.07 2.63 6.93 -2.24 -0.02 2.62 16 51 H 0.11 2.66 8.13 -2.27 -0.02 2.65 16 52 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -84.29 391.79 5.19 -79.10 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.92 Total: 11.86 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 9.09 Total: 18.82 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -6.78 Total: -136.16 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.07 Total: -24.51 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -84.29 5.19 -79.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045979603.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.833 kcal (2) G-P(sol) polarization free energy of solvation -84.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds