Wall clock time and date at job start Wed Apr 1 2020 04:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46933 * 2 1 4 4 N 1.40081 * 126.03300 * 90.02671 * 3 2 1 5 5 C 1.30840 * 108.20293 * 179.97438 * 4 3 2 6 6 C 1.50706 * 125.89813 * 179.97438 * 5 4 3 7 7 C 1.39868 * 108.20347 * 0.24675 * 5 4 3 8 8 C 1.50701 * 126.04010 * 179.72181 * 7 5 4 9 9 C 1.50701 * 109.47251 * 90.02206 * 8 7 5 10 10 O 1.21280 * 120.00068 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99544 * 180.02562 * 9 8 7 12 12 C 1.46745 * 125.33310 * 359.69217 * 11 9 8 13 13 C 1.54111 * 106.62921 * 161.56493 * 12 11 9 14 14 H 1.09004 * 113.48383 * 151.38068 * 13 12 11 15 15 C 1.53970 * 109.45497 * 278.65446 * 13 12 11 16 16 N 1.46775 * 106.62194 * 138.17824 * 15 13 12 17 17 C 1.36936 * 125.33374 * 161.48000 * 16 15 13 18 18 H 1.07998 * 120.00330 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00094 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99627 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00274 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47114 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46968 * 120.00513 * 21 19 17 24 24 H 1.48503 * 109.47118 * 240.00078 * 21 19 17 25 25 C 1.46669 * 109.32593 * 341.47873 * 16 15 13 26 26 C 1.53718 * 107.94167 * 0.54758 * 25 16 15 27 27 H 1.09005 * 113.05601 * 139.99974 * 26 25 16 28 28 C 1.46642 * 125.32636 * 179.97438 * 11 9 8 29 29 C 1.34946 * 126.03988 * 270.02169 * 3 2 1 30 30 C 1.50704 * 126.12453 * 0.02562 * 29 3 2 31 31 H 1.09003 * 109.47462 * 300.00323 * 1 2 3 32 32 H 1.09006 * 109.46931 * 59.99844 * 1 2 3 33 33 H 1.08998 * 109.47495 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47054 * 240.00336 * 2 1 3 35 35 H 1.08998 * 109.47203 * 120.00115 * 2 1 3 36 36 H 1.09001 * 109.46953 * 90.02806 * 6 5 4 37 37 H 1.09000 * 109.47318 * 210.02404 * 6 5 4 38 38 H 1.09000 * 109.47161 * 330.03035 * 6 5 4 39 39 H 1.08995 * 109.46822 * 210.01957 * 8 7 5 40 40 H 1.08998 * 109.46800 * 330.01672 * 8 7 5 41 41 H 1.09002 * 110.00565 * 280.99905 * 12 11 9 42 42 H 1.08998 * 110.00894 * 42.36316 * 12 11 9 43 43 H 1.09005 * 110.02159 * 257.46718 * 15 13 12 44 44 H 1.08996 * 110.02566 * 18.88300 * 15 13 12 45 45 H 0.97000 * 119.99842 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.77208 * 240.92476 * 25 16 15 47 47 H 1.08999 * 109.76726 * 120.16879 * 25 16 15 48 48 H 1.09004 * 109.75637 * 300.45664 * 28 11 9 49 49 H 1.09001 * 109.76195 * 61.17033 * 28 11 9 50 50 H 1.08998 * 109.46830 * 90.02190 * 30 29 3 51 51 H 1.09003 * 109.46994 * 210.02216 * 30 29 3 52 52 H 1.08994 * 109.47016 * 330.02747 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2934 2.1580 1.1328 5 6 2.7089 3.3322 0.7322 6 6 3.1139 4.4778 1.6238 7 6 2.7063 3.3428 -0.6665 8 6 3.1072 4.4997 -1.5451 9 6 4.5817 4.4157 -1.8445 10 8 5.2422 3.5063 -1.3889 11 7 5.1666 5.3519 -2.6178 12 6 4.4810 6.4948 -3.2319 13 6 5.5736 7.5150 -3.6069 14 1 5.3115 8.1373 -4.4626 15 6 5.9589 8.3347 -2.3618 16 7 7.4207 8.4662 -2.3816 17 6 8.1416 9.3968 -1.6821 18 1 7.6334 10.1114 -1.0518 19 6 9.5259 9.4209 -1.7823 20 7 10.1454 8.5496 -2.5500 21 14 10.5096 10.6899 -0.8275 22 1 9.5837 11.5468 -0.0442 23 1 11.4447 9.9988 0.0961 24 1 11.2824 11.5325 -1.7752 25 6 7.9880 7.4445 -3.2679 26 6 6.8252 6.6275 -3.8539 27 1 6.9651 6.3799 -4.9062 28 6 6.5867 5.3845 -2.9821 29 6 2.2825 2.1300 -1.0912 30 6 2.1276 1.6951 -2.5258 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 4.1805 4.4114 1.8385 37 1 2.9026 5.4216 1.1213 38 1 2.5518 4.4287 2.5564 39 1 2.5442 4.4597 -2.4776 40 1 2.8934 5.4370 -1.0316 41 1 3.9456 6.1726 -4.1250 42 1 3.7858 6.9392 -2.5197 43 1 5.4949 9.3201 -2.4054 44 1 5.6432 7.8125 -1.4587 45 1 11.1127 8.5667 -2.6204 46 1 8.6493 6.7900 -2.7003 47 1 8.5450 7.9233 -4.0732 48 1 7.1970 5.4436 -2.0809 49 1 6.8440 4.4861 -3.5432 50 1 1.1216 1.9336 -2.8711 51 1 2.8575 2.2173 -3.1445 52 1 2.2917 0.6201 -2.5993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049176000.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:44 Heat of formation + Delta-G solvation = 40.984866 kcal Electronic energy + Delta-G solvation = -31291.818270 eV Core-core repulsion = 27292.467390 eV Total energy + Delta-G solvation = -3999.350881 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.41360 -41.35650 -39.45556 -36.55659 -35.94549 -34.13997 -33.84596 -32.51147 -31.73966 -31.19369 -30.12047 -28.24368 -27.63821 -27.08542 -26.42526 -24.41147 -23.64322 -21.90720 -21.11047 -20.75879 -20.34847 -19.90097 -18.83596 -18.00432 -17.57757 -17.12828 -16.72723 -16.39433 -16.12535 -15.83800 -15.49107 -15.40850 -14.91859 -14.68286 -14.50626 -14.26904 -14.10980 -14.03434 -13.95103 -13.77355 -13.54038 -13.43932 -13.27510 -13.20932 -13.11278 -13.01245 -12.88052 -12.76024 -12.67464 -12.60293 -12.48567 -12.15680 -11.96224 -11.85346 -11.61049 -11.53433 -11.41481 -11.36229 -10.87862 -10.69313 -9.96493 -9.53304 -9.20006 -8.86494 -7.85053 -5.19698 0.92716 1.44733 1.46181 1.56094 1.59196 1.66623 1.75723 2.28083 2.49495 3.33102 3.48089 3.52607 3.58720 3.74399 3.81087 3.98615 4.01092 4.02356 4.09963 4.14823 4.25480 4.28293 4.34221 4.37278 4.40829 4.56223 4.60574 4.62732 4.70019 4.71601 4.76602 4.77029 4.81874 4.84917 4.90416 4.96943 5.00971 5.05320 5.07625 5.16968 5.19584 5.21109 5.30048 5.35380 5.43782 5.51137 5.63709 5.76534 5.80027 6.22293 6.22413 6.67964 6.81064 7.12361 7.29698 7.81699 8.42909 9.25276 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.002397 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.929569 B =11680.574787 C =12295.611074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 N -0.374 5.374 4 N -0.339 5.339 5 C 0.071 3.929 6 C -0.073 4.073 7 C -0.244 4.244 8 C -0.041 4.041 9 C 0.522 3.478 10 O -0.589 6.589 11 N -0.612 5.612 12 C 0.113 3.887 13 C -0.095 4.095 14 H 0.129 0.871 15 C 0.137 3.863 16 N -0.626 5.626 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.070 4.070 20 N -0.952 5.952 21 Si 0.976 3.024 22 H -0.264 1.264 23 H -0.298 1.298 24 H -0.290 1.290 25 C 0.197 3.803 26 C -0.110 4.110 27 H 0.117 0.883 28 C 0.128 3.872 29 C 0.098 3.902 30 C -0.089 4.089 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.010 0.990 45 H 0.245 0.755 46 H 0.000 1.000 47 H 0.014 0.986 48 H 0.022 0.978 49 H 0.062 0.938 50 H 0.108 0.892 51 H 0.080 0.920 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.935 -13.447 -4.032 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.002 4.002 3 N -0.157 5.157 4 N -0.162 5.162 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.255 4.255 8 C -0.082 4.082 9 C 0.312 3.688 10 O -0.469 6.469 11 N -0.346 5.346 12 C -0.009 4.009 13 C -0.114 4.114 14 H 0.147 0.853 15 C 0.012 3.988 16 N -0.352 5.352 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.262 4.262 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.217 1.217 25 C 0.071 3.929 26 C -0.129 4.129 27 H 0.135 0.865 28 C 0.005 3.995 29 C -0.031 4.031 30 C -0.147 4.147 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.028 0.972 45 H 0.055 0.945 46 H 0.019 0.981 47 H 0.033 0.967 48 H 0.041 0.959 49 H 0.080 0.920 50 H 0.126 0.874 51 H 0.099 0.901 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.771 -14.827 -2.674 28.993 hybrid contribution 1.986 0.990 0.386 2.252 sum -22.785 -13.837 -2.288 26.756 Atomic orbital electron populations 1.22108 0.92813 1.04309 1.02392 1.21973 0.96337 0.76635 1.05242 1.48738 1.51449 1.12667 1.02815 1.77178 1.25189 1.04411 1.09434 1.22494 0.97953 0.94467 0.94545 1.20211 1.00972 0.93717 0.98226 1.19322 1.15916 0.97367 0.92929 1.19900 0.89285 0.97739 1.01232 1.21140 0.91193 0.80010 0.76409 1.90676 1.67002 1.36244 1.53010 1.48424 1.09208 1.26939 1.49995 1.22225 0.94385 0.84549 0.99703 1.23006 0.93720 0.96018 0.98669 0.85289 1.21498 0.83881 0.97827 0.95614 1.44567 1.01978 1.35801 1.52814 1.19483 0.89297 1.07947 1.19975 0.89912 1.25653 0.97657 1.01407 1.01509 1.70199 1.07454 1.38966 1.43511 0.85032 0.78517 0.78298 0.77651 1.18809 1.22506 1.21663 1.20716 0.91612 0.88845 0.91687 1.22960 0.96524 0.93687 0.99769 0.86468 1.21587 0.82697 0.98073 0.97155 1.21343 0.98432 0.91181 0.92097 1.20585 1.04676 1.02858 0.86599 0.93613 0.91556 0.88055 0.86792 0.89295 0.92200 0.88832 0.90174 0.85083 0.86641 0.87254 0.88385 0.93542 0.97191 0.94535 0.98142 0.96745 0.95906 0.91959 0.87412 0.90122 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.12 1.72 6.96 86.38 0.60 2.33 16 3 N -0.37 -8.87 3.61 -334.69 -1.21 -10.08 16 4 N -0.34 -10.22 12.58 -47.38 -0.60 -10.81 16 5 C 0.07 2.04 7.22 43.10 0.31 2.35 16 6 C -0.07 -1.79 10.26 71.24 0.73 -1.06 16 7 C -0.24 -6.22 4.59 -20.14 -0.09 -6.31 16 8 C -0.04 -0.85 4.64 29.10 0.13 -0.71 16 9 C 0.52 15.75 7.83 87.66 0.69 16.43 16 10 O -0.59 -24.06 16.34 -3.03 -0.05 -24.11 16 11 N -0.61 -17.56 3.30 -817.32 -2.70 -20.26 16 12 C 0.11 2.26 5.77 86.71 0.50 2.76 16 13 C -0.09 -2.60 4.16 -9.26 -0.04 -2.64 16 14 H 0.13 2.87 8.14 -2.38 -0.02 2.85 16 15 C 0.14 5.18 6.49 86.65 0.56 5.74 16 16 N -0.63 -31.80 3.38 -697.60 -2.36 -34.16 16 17 C -0.24 -13.41 10.25 84.03 0.86 -12.55 16 18 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -4.03 5.48 84.86 0.47 -3.56 16 20 N -0.95 -58.34 10.25 21.65 0.22 -58.12 16 21 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 C 0.20 9.64 4.77 86.59 0.41 10.05 16 26 C -0.11 -3.75 4.01 -9.49 -0.04 -3.78 16 27 H 0.12 3.35 8.14 -2.38 -0.02 3.33 16 28 C 0.13 4.57 6.21 86.58 0.54 5.11 16 29 C 0.10 2.18 6.93 41.41 0.29 2.47 16 30 C -0.09 -1.17 9.72 71.24 0.69 -0.47 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 1.09 7.05 -2.39 -0.02 1.07 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.88 7.25 -2.39 -0.02 1.86 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.13 1.69 7.79 -2.39 -0.02 1.67 16 40 H 0.12 1.98 6.98 -2.39 -0.02 1.96 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.10 1.56 7.43 -2.39 -0.02 1.54 16 43 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 44 H 0.01 0.41 7.72 -2.39 -0.02 0.39 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.00 0.02 6.73 -2.39 -0.02 0.01 16 47 H 0.01 0.79 7.38 -2.39 -0.02 0.77 16 48 H 0.02 1.03 7.29 -2.38 -0.02 1.01 16 49 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.08 1.15 7.79 -2.39 -0.02 1.13 16 52 H 0.08 0.86 7.08 -2.39 -0.02 0.84 16 Total: -1.00 -85.90 410.23 3.59 -82.31 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.90 Total: 11.32 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.35 Total: 15.23 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -6.64 Total: -133.43 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -85.90 3.59 -82.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049176000.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.293 kcal (2) G-P(sol) polarization free energy of solvation -85.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds