Wall clock time and date at job start Wed Apr 1 2020 04:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46505 * 109.47595 * 2 1 4 4 C 1.34253 * 125.75346 * 125.31520 * 3 2 1 5 5 C 1.38040 * 107.41503 * 180.15004 * 4 3 2 6 6 C 1.47434 * 126.41623 * 179.87107 * 5 4 3 7 7 O 1.21606 * 119.99749 * 139.35731 * 6 5 4 8 8 N 1.34772 * 119.99885 * 319.36163 * 6 5 4 9 9 C 1.46935 * 120.70251 * 354.07917 * 8 6 5 10 10 C 1.53185 * 108.89538 * 234.48049 * 9 8 6 11 11 C 1.53162 * 109.28367 * 304.74191 * 10 9 8 12 12 C 1.52222 * 109.68942 * 60.15896 * 11 10 9 13 13 C 1.54490 * 110.28144 * 63.06994 * 12 11 10 14 14 C 1.55022 * 101.53229 * 153.38342 * 13 12 11 15 15 N 1.47492 * 104.90275 * 323.64695 * 14 13 12 16 16 C 1.36933 * 125.66158 * 204.03295 * 15 14 13 17 17 H 1.08000 * 119.99739 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00095 * 359.96880 * 16 15 14 19 19 N 1.31613 * 120.00316 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99851 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47012 * 90.00045 * 20 18 16 22 22 H 1.48497 * 109.47314 * 210.00015 * 20 18 16 23 23 H 1.48499 * 109.47134 * 330.00567 * 20 18 16 24 24 C 1.47189 * 108.67359 * 24.00732 * 15 14 13 25 25 C 1.47070 * 120.70210 * 174.36084 * 8 6 5 26 26 C 1.41289 * 107.17321 * 359.60633 * 5 4 3 27 27 C 1.50702 * 125.99440 * 180.20849 * 26 5 4 28 28 N 1.30455 * 108.02034 * 0.24420 * 26 5 4 29 29 H 1.09000 * 109.47291 * 300.00138 * 1 2 3 30 30 H 1.09002 * 109.47183 * 60.00215 * 1 2 3 31 31 H 1.08998 * 109.47616 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47291 * 239.99862 * 2 1 3 33 33 H 1.09002 * 109.47183 * 119.99785 * 2 1 3 34 34 H 1.07999 * 126.29882 * 359.97438 * 4 3 2 35 35 H 1.08999 * 109.56850 * 354.30942 * 9 8 6 36 36 H 1.09002 * 109.56475 * 114.65933 * 9 8 6 37 37 H 1.09001 * 109.50448 * 184.79646 * 10 9 8 38 38 H 1.08997 * 109.53524 * 64.70112 * 10 9 8 39 39 H 1.09004 * 109.43525 * 300.08655 * 11 10 9 40 40 H 1.09008 * 109.39736 * 180.20452 * 11 10 9 41 41 H 1.09011 * 111.01139 * 271.44223 * 13 12 11 42 42 H 1.08993 * 111.01575 * 35.31928 * 13 12 11 43 43 H 1.09000 * 110.35931 * 204.79226 * 14 13 12 44 44 H 1.09000 * 110.44664 * 82.54527 * 14 13 12 45 45 H 0.96993 * 120.00523 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.91004 * 239.12135 * 24 15 14 47 47 H 1.08993 * 109.90973 * 117.84971 * 24 15 14 48 48 H 1.08999 * 109.57582 * 247.09778 * 25 8 6 49 49 H 1.09006 * 109.57017 * 7.46778 * 25 8 6 50 50 H 1.09005 * 109.47120 * 89.99710 * 27 26 5 51 51 H 1.08998 * 109.47412 * 209.99958 * 27 26 5 52 52 H 1.08997 * 109.46652 * 330.00300 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8737 1.9108 0.8890 5 6 3.0712 3.2308 0.5366 6 6 3.9333 4.2030 1.2332 7 8 4.6148 4.9799 0.5922 8 7 3.9662 4.2307 2.5802 9 6 3.0559 3.3903 3.3703 10 6 2.2828 4.2801 4.3486 11 6 3.2755 5.0797 5.1978 12 6 4.1360 5.9526 4.2951 13 6 3.2586 6.9878 3.5568 14 6 4.2754 8.1297 3.3010 15 7 5.1350 8.1476 4.4994 16 6 5.8508 9.2234 4.9524 17 1 6.4529 9.1344 5.8446 18 6 5.8028 10.4283 4.2649 19 7 5.0688 10.5369 3.1778 20 14 6.7799 11.8958 4.8825 21 1 8.1318 11.8842 4.2682 22 1 6.0777 13.1502 4.5103 23 1 6.9070 11.8193 6.3601 24 6 5.0952 6.8172 5.1279 25 6 4.9097 5.1072 3.2905 26 6 2.2973 3.4740 -0.6202 27 6 2.2046 4.7807 -1.3651 28 7 1.6764 2.3693 -0.9300 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.3224 1.3991 1.7276 35 1 2.3558 2.8849 2.7050 36 1 3.6321 2.6509 3.9265 37 1 1.6672 3.6577 4.9980 38 1 1.6453 4.9665 3.7913 39 1 3.9137 4.3923 5.7532 40 1 2.7273 5.7109 5.8973 41 1 2.8820 6.5822 2.6177 42 1 2.4394 7.3285 4.1900 43 1 3.7566 9.0822 3.1924 44 1 4.8692 7.9186 2.4117 45 1 5.0349 11.3789 2.6976 46 1 4.7269 6.9006 6.1504 47 1 6.0914 6.3750 5.1243 48 1 5.6475 4.5005 3.8153 49 1 5.4120 5.7587 2.5753 50 1 2.9759 4.8158 -2.1346 51 1 1.2227 4.8646 -1.8309 52 1 2.3482 5.6068 -0.6688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054204733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:17 Heat of formation + Delta-G solvation = 69.643442 kcal Electronic energy + Delta-G solvation = -32059.066697 eV Core-core repulsion = 28060.958545 eV Total energy + Delta-G solvation = -3998.108152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.66039 -40.01772 -37.98897 -35.79218 -35.04767 -33.10640 -31.86637 -31.63640 -30.56261 -29.55723 -28.47168 -27.91309 -25.65060 -25.58047 -23.66001 -23.59680 -22.23216 -21.59121 -20.55749 -19.98389 -18.99835 -18.12987 -17.14097 -16.68941 -16.60558 -15.87261 -15.48048 -15.17904 -14.90741 -14.53185 -14.38277 -14.19570 -13.87912 -13.80214 -13.45076 -13.27833 -13.18309 -12.89727 -12.69389 -12.61954 -12.39698 -12.30681 -12.20342 -12.09137 -11.79693 -11.73334 -11.52294 -11.08090 -11.00187 -10.83797 -10.80151 -10.72448 -10.65088 -10.06194 -9.99586 -9.75128 -9.61550 -9.60187 -9.44488 -9.32754 -8.70977 -8.53960 -8.32581 -6.71777 -5.54064 -2.95950 1.43234 2.10521 2.18891 3.10344 3.42611 3.46370 3.50710 3.52980 4.04755 4.38683 4.47039 4.56790 4.59827 4.71226 4.80558 4.86427 5.01395 5.04382 5.14480 5.18569 5.26840 5.31508 5.37481 5.43079 5.48175 5.60279 5.62137 5.65262 5.71403 5.75629 5.86479 5.89240 5.93329 5.99899 6.06586 6.12558 6.20956 6.37604 6.40527 6.45836 6.49638 6.61148 6.64978 6.73169 6.86168 6.89991 7.02541 7.45834 7.66764 7.68998 7.75180 7.99373 8.47642 8.48144 9.32625 9.93744 10.59775 11.49215 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019673 B = 0.002757 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.901858 B =10152.525198 C =10982.808541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.362 5.362 4 C 0.090 3.910 5 C -0.275 4.275 6 C 0.591 3.409 7 O -0.528 6.528 8 N -0.604 5.604 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.100 4.100 12 C -0.084 4.084 13 C -0.127 4.127 14 C 0.154 3.846 15 N -0.604 5.604 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.912 3.088 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.149 3.851 25 C 0.133 3.867 26 C 0.127 3.873 27 C -0.074 4.074 28 N -0.299 5.299 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.181 0.819 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.015 0.985 45 H 0.251 0.749 46 H 0.025 0.975 47 H 0.020 0.980 48 H 0.061 0.939 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.072 0.928 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.310 -24.566 -2.800 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.141 5.141 4 C -0.060 4.060 5 C -0.290 4.290 6 C 0.378 3.622 7 O -0.404 6.404 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.171 4.171 11 C -0.138 4.138 12 C -0.085 4.085 13 C -0.165 4.165 14 C 0.029 3.971 15 N -0.330 5.330 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.023 3.977 25 C 0.011 3.989 26 C -0.040 4.040 27 C -0.133 4.133 28 N -0.121 5.121 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.198 0.802 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.038 0.962 48 H 0.079 0.921 49 H 0.119 0.881 50 H 0.102 0.898 51 H 0.091 0.909 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.752 -24.650 -4.021 27.192 hybrid contribution 1.121 0.849 1.073 1.769 sum -9.631 -23.801 -2.949 25.845 Atomic orbital electron populations 1.22049 0.93424 1.02966 1.03873 1.21775 0.96416 0.77088 1.04010 1.48474 1.34314 1.10419 1.20915 1.23047 0.93695 0.93998 0.95237 1.20264 1.11129 0.94764 1.02826 1.17306 0.81056 0.82499 0.81298 1.90821 1.43232 1.40819 1.65537 1.47978 1.37886 1.42944 1.04958 1.21850 0.92646 0.93153 0.94207 1.21919 0.98263 0.98954 0.97971 1.21381 0.97142 0.98030 0.97289 1.21335 0.96567 0.95073 0.95533 1.22912 0.98199 0.96997 0.98415 1.21926 0.90061 0.97150 0.87937 1.44560 1.54171 1.06284 1.27970 1.19048 1.20359 0.88233 1.07357 0.90633 1.24782 1.00486 0.97924 0.97523 1.69823 1.43264 1.24833 1.18884 0.86106 0.79330 0.82364 0.77885 1.21701 1.21746 1.20811 1.21176 0.95266 0.86717 0.94568 1.21530 0.90198 0.92068 0.95059 1.22433 0.93168 0.95121 0.93239 1.20254 1.02771 0.90282 0.99980 1.77117 1.24968 0.96695 1.13361 0.91905 0.90905 0.90589 0.89520 0.88444 0.80203 0.89979 0.91815 0.91329 0.91178 0.92323 0.91528 0.92623 0.92569 0.88031 0.96734 0.93815 0.95690 0.96202 0.92119 0.88118 0.89820 0.90922 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.09 37.15 0.37 -0.46 16 2 C 0.13 0.68 7.21 -4.04 -0.03 0.65 16 3 N -0.36 -3.46 3.65 -60.81 -0.22 -3.68 16 4 C 0.09 0.88 9.07 -16.57 -0.15 0.73 16 5 C -0.27 -3.68 5.21 -105.07 -0.55 -4.23 16 6 C 0.59 9.56 7.33 -12.52 -0.09 9.47 16 7 O -0.53 -10.81 15.96 5.27 0.08 -10.72 16 8 N -0.60 -8.67 2.52 -174.40 -0.44 -9.10 16 9 C 0.10 1.08 5.49 -3.71 -0.02 1.06 16 10 C -0.13 -1.46 5.91 -26.55 -0.16 -1.62 16 11 C -0.10 -1.34 4.53 -27.04 -0.12 -1.46 16 12 C -0.08 -1.45 0.56 -154.09 -0.09 -1.53 16 13 C -0.13 -2.53 4.91 -24.88 -0.12 -2.65 16 14 C 0.15 3.93 5.56 -2.43 -0.01 3.92 16 15 N -0.60 -15.87 3.40 -170.23 -0.58 -16.45 16 16 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -27.80 10.09 55.49 0.56 -27.24 16 20 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 C 0.15 3.13 6.43 -3.32 -0.02 3.11 16 25 C 0.13 2.24 4.98 -4.04 -0.02 2.22 16 26 C 0.13 1.74 7.26 -82.02 -0.60 1.14 16 27 C -0.07 -0.94 9.96 36.01 0.36 -0.58 16 28 N -0.30 -3.78 12.33 33.90 0.42 -3.36 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.24 8.06 -51.93 -0.42 -0.18 16 34 H 0.18 1.12 7.36 -52.49 -0.39 0.73 16 35 H 0.08 0.75 4.80 -51.93 -0.25 0.50 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.89 7.32 -51.93 -0.38 0.51 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.92 8.11 -51.92 -0.42 0.50 16 41 H 0.06 1.10 7.60 -51.92 -0.39 0.70 16 42 H 0.06 1.11 8.01 -51.93 -0.42 0.69 16 43 H 0.10 2.93 5.88 -51.93 -0.31 2.62 16 44 H 0.01 0.41 7.66 -51.93 -0.40 0.02 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.03 0.52 7.79 -51.93 -0.40 0.11 16 47 H 0.02 0.42 7.80 -51.93 -0.40 0.01 16 48 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 49 H 0.10 2.11 6.21 -51.93 -0.32 1.78 16 50 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.08 1.20 7.82 -51.93 -0.41 0.79 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -35.47 401.02 -9.33 -44.81 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.68 Total: -0.79 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.49 Total: 2.84 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.26 Total: -59.83 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.47 -9.33 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054204733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.449 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds