Wall clock time and date at job start Wed Apr 1 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46843 * 2 1 4 4 C 1.34947 * 126.03949 * 124.99582 * 3 2 1 5 5 C 1.35316 * 107.74946 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.03902 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47232 * 89.99911 * 6 5 4 8 8 O 1.21286 * 120.00207 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99973 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.70114 * 0.02562 * 9 7 6 11 11 C 1.53194 * 108.92836 * 125.86689 * 10 9 7 12 12 C 1.53167 * 109.27127 * 55.22332 * 11 10 9 13 13 C 1.52244 * 109.61671 * 299.82654 * 12 11 10 14 14 C 1.54476 * 110.29629 * 181.99477 * 13 12 11 15 15 C 1.55025 * 101.52802 * 153.34186 * 14 13 12 16 16 N 1.47491 * 104.90787 * 323.65790 * 15 14 13 17 17 C 1.36933 * 125.65913 * 204.05218 * 16 15 14 18 18 H 1.08006 * 119.99758 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.00396 * 359.96002 * 17 16 15 20 20 N 1.31615 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99949 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46972 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46936 * 120.00031 * 21 19 17 24 24 H 1.48500 * 109.46833 * 239.99691 * 21 19 17 25 25 C 1.47186 * 108.67374 * 24.01409 * 16 15 14 26 26 C 1.47087 * 120.69948 * 180.02562 * 9 7 6 27 27 C 1.39868 * 107.91778 * 0.26499 * 5 4 3 28 28 N 1.30844 * 108.20433 * 359.55450 * 27 5 4 29 29 H 1.08999 * 109.47011 * 60.00655 * 1 2 3 30 30 H 1.09003 * 109.46611 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47672 * 299.99773 * 1 2 3 32 32 H 1.08996 * 109.47188 * 240.00326 * 2 1 3 33 33 H 1.08997 * 109.47399 * 119.99713 * 2 1 3 34 34 H 1.08008 * 126.12339 * 0.04502 * 4 3 2 35 35 H 1.08993 * 109.47183 * 329.99669 * 6 5 4 36 36 H 1.09000 * 109.47052 * 210.00271 * 6 5 4 37 37 H 1.08998 * 109.55754 * 6.03360 * 10 9 7 38 38 H 1.08998 * 109.56111 * 245.70257 * 10 9 7 39 39 H 1.08998 * 109.50553 * 295.28053 * 11 10 9 40 40 H 1.09002 * 109.50324 * 175.16120 * 11 10 9 41 41 H 1.09002 * 109.44309 * 59.86539 * 12 11 10 42 42 H 1.09003 * 109.44389 * 179.79651 * 12 11 10 43 43 H 1.08994 * 111.01428 * 271.40832 * 14 13 12 44 44 H 1.09000 * 111.00794 * 35.27799 * 14 13 12 45 45 H 1.09003 * 110.34836 * 204.80499 * 15 14 13 46 46 H 1.08994 * 110.44399 * 82.56595 * 15 14 13 47 47 H 0.97008 * 119.99376 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.91088 * 239.09563 * 25 16 15 49 49 H 1.09002 * 109.90773 * 117.82594 * 25 16 15 50 50 H 1.08996 * 109.58138 * 352.23668 * 26 9 7 51 51 H 1.09009 * 109.57380 * 112.63068 * 26 9 7 52 52 H 1.08005 * 125.89887 * 179.73408 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8729 1.9212 0.8939 5 6 3.0711 3.2139 0.5464 6 6 3.9545 4.2001 1.2660 7 6 5.3459 4.1414 0.6903 8 8 5.5956 3.3746 -0.2156 9 7 6.3127 4.9417 1.1814 10 6 6.0273 5.8768 2.2783 11 6 7.0257 5.6306 3.4138 12 6 8.4517 5.7407 2.8657 13 6 8.6617 4.6999 1.7746 14 6 10.1115 4.7638 1.2450 15 6 10.3225 3.3121 0.7439 16 7 9.5947 2.4677 1.7096 17 6 9.8520 1.1480 1.9688 18 1 9.2595 0.6154 2.6981 19 6 10.8740 0.4945 1.2940 20 7 11.5954 1.1433 0.4047 21 14 11.2244 -1.3062 1.6471 22 1 10.2789 -1.8011 2.6798 23 1 11.0559 -2.0967 0.4014 24 1 12.6172 -1.4517 2.1412 25 6 8.5466 3.2794 2.3492 26 6 7.6759 4.8976 0.6307 27 6 2.3067 3.4744 -0.5957 28 7 1.6799 2.3749 -0.9276 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3192 1.4126 1.7358 35 1 3.9892 3.9504 2.3264 36 1 3.5523 5.2056 1.1426 37 1 5.0129 5.7134 2.6424 38 1 6.1275 6.9013 1.9199 39 1 6.8700 4.6334 3.8255 40 1 6.8780 6.3751 4.1961 41 1 8.6052 6.7370 2.4512 42 1 9.1647 5.5695 3.6723 43 1 10.1970 5.4768 0.4250 44 1 10.8098 5.0063 2.0460 45 1 11.3833 3.0611 0.7450 46 1 9.9058 3.1900 -0.2559 47 1 12.3094 0.6864 -0.0671 48 1 8.7009 3.3017 3.4280 49 1 7.5648 2.8649 2.1205 50 1 7.7596 4.0679 -0.0712 51 1 7.8935 5.8350 0.1188 52 1 2.2468 4.4192 -1.1156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054226373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:25 Heat of formation + Delta-G solvation = 45.642555 kcal Electronic energy + Delta-G solvation = -31645.317294 eV Core-core repulsion = 27646.168385 eV Total energy + Delta-G solvation = -3999.148908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.21438 -41.41691 -39.57323 -37.21467 -35.52057 -34.82825 -33.22668 -32.89041 -31.78393 -31.07682 -29.99474 -28.29825 -27.34788 -26.00291 -25.37352 -24.62019 -23.10752 -21.98187 -21.73345 -21.46745 -20.18836 -19.17686 -18.90033 -18.02964 -17.85796 -17.01606 -16.70896 -16.48172 -16.25285 -15.90341 -15.70438 -15.29776 -14.96955 -14.87455 -14.73112 -14.44345 -14.18347 -14.04310 -13.92142 -13.79661 -13.70109 -13.39754 -13.29674 -13.17409 -12.99723 -12.88027 -12.79719 -12.61301 -12.44078 -12.27393 -12.06325 -11.96827 -11.90520 -11.75800 -11.52559 -11.45565 -11.24461 -10.98424 -10.78133 -10.66311 -10.34537 -9.46885 -9.28725 -8.89237 -7.79655 -5.23451 0.97263 1.40088 1.42722 1.52419 1.63509 1.75194 1.83324 2.32622 2.46349 3.29052 3.56506 3.66707 3.73317 3.78586 3.95270 3.97078 4.04133 4.05240 4.15382 4.23303 4.24150 4.29478 4.32420 4.37709 4.46448 4.59404 4.67714 4.70886 4.71934 4.76016 4.79863 4.84541 4.87718 4.93191 4.96011 5.00616 5.04988 5.14583 5.19433 5.20423 5.21105 5.27534 5.40813 5.53677 5.56663 5.62704 5.67165 5.74885 5.82710 6.14939 6.29262 6.62887 6.76094 7.08925 7.40174 7.77589 8.42226 9.22434 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008756 B = 0.003502 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.954297 B = 7993.755246 C =10395.730587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 N -0.378 5.378 4 C 0.058 3.942 5 C -0.234 4.234 6 C -0.044 4.044 7 C 0.502 3.498 8 O -0.593 6.593 9 N -0.609 5.609 10 C 0.103 3.897 11 C -0.133 4.133 12 C -0.097 4.097 13 C -0.070 4.070 14 C -0.120 4.120 15 C 0.156 3.844 16 N -0.626 5.626 17 C -0.237 4.237 18 H 0.075 0.925 19 C -0.070 4.070 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.285 1.285 25 C 0.158 3.842 26 C 0.138 3.862 27 C 0.050 3.950 28 N -0.332 5.332 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.188 0.812 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.070 0.930 46 H -0.029 1.029 47 H 0.246 0.754 48 H 0.024 0.976 49 H -0.001 1.001 50 H 0.038 0.962 51 H 0.083 0.917 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.478 12.004 7.823 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.002 4.002 3 N -0.160 5.160 4 C -0.089 4.089 5 C -0.246 4.246 6 C -0.084 4.084 7 C 0.292 3.708 8 O -0.473 6.473 9 N -0.342 5.342 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.134 4.134 13 C -0.072 4.072 14 C -0.159 4.159 15 C 0.031 3.969 16 N -0.352 5.352 17 C -0.367 4.367 18 H 0.092 0.908 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.807 3.193 22 H -0.191 1.191 23 H -0.223 1.223 24 H -0.211 1.211 25 C 0.033 3.967 26 C 0.015 3.985 27 C -0.136 4.136 28 N -0.154 5.154 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.205 0.795 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.088 0.912 46 H -0.011 1.011 47 H 0.056 0.944 48 H 0.042 0.958 49 H 0.017 0.983 50 H 0.057 0.943 51 H 0.101 0.899 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -21.126 10.718 6.480 24.560 hybrid contribution 1.403 -1.309 -0.071 1.920 sum -19.724 9.409 6.409 22.773 Atomic orbital electron populations 1.21966 0.92674 1.03980 1.02432 1.22002 0.96936 0.76380 1.04874 1.48874 1.35759 1.10786 1.20621 1.22743 0.94552 0.94723 0.96904 1.19728 1.07315 0.95639 1.01935 1.19975 0.87199 1.00799 1.00437 1.21596 0.88254 0.78646 0.82302 1.90728 1.83428 1.40477 1.32715 1.48297 1.08911 1.40053 1.36955 1.22123 1.00890 0.93158 0.85651 1.21978 0.93816 1.02915 0.98354 1.21395 0.97963 0.97826 0.96259 1.21272 0.94649 0.94797 0.96439 1.22848 0.95500 0.96713 1.00838 1.21696 0.98164 0.88096 0.88960 1.44897 1.36822 1.07792 1.45697 1.19453 1.12526 0.86491 1.18187 0.90751 1.25647 0.98835 1.02721 0.98994 1.70088 1.23933 1.35912 1.29994 0.84995 0.77767 0.79391 0.77120 1.19089 1.22270 1.21127 1.21283 0.89884 0.90751 0.94789 1.21167 0.81357 1.01120 0.94896 1.24089 0.95622 0.97924 0.95955 1.77176 1.25995 0.97590 1.14591 0.92983 0.88373 0.92208 0.90346 0.86275 0.79516 0.85976 0.84728 0.86665 0.88760 0.93081 0.87139 0.89267 0.91864 0.89749 0.90883 0.91222 1.01060 0.94431 0.95797 0.98306 0.94283 0.89888 0.78613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.10 71.98 0.73 -1.47 16 2 C 0.12 2.11 7.23 86.38 0.62 2.73 16 3 N -0.38 -9.65 3.68 -348.06 -1.28 -10.93 16 4 C 0.06 1.43 11.36 83.54 0.95 2.38 16 5 C -0.23 -5.81 4.59 -20.14 -0.09 -5.90 16 6 C -0.04 -0.83 4.53 29.10 0.13 -0.70 16 7 C 0.50 15.21 7.69 87.66 0.67 15.88 16 8 O -0.59 -26.01 15.46 -3.05 -0.05 -26.06 16 9 N -0.61 -15.96 2.59 -820.19 -2.13 -18.08 16 10 C 0.10 1.47 6.32 86.36 0.55 2.02 16 11 C -0.13 -2.15 5.92 30.72 0.18 -1.96 16 12 C -0.10 -2.14 4.52 30.40 0.14 -2.00 16 13 C -0.07 -2.33 0.54 -51.94 -0.03 -2.36 16 14 C -0.12 -4.51 5.99 31.79 0.19 -4.32 16 15 C 0.16 8.24 5.59 86.88 0.49 8.72 16 16 N -0.63 -34.72 3.40 -692.47 -2.36 -37.08 16 17 C -0.24 -14.29 10.28 84.03 0.86 -13.43 16 18 H 0.07 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 20 N -0.95 -59.90 10.09 21.65 0.22 -59.68 16 21 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 25 C 0.16 6.90 5.42 86.47 0.47 7.37 16 26 C 0.14 4.58 4.88 86.03 0.42 5.00 16 27 C 0.05 1.29 11.96 85.23 1.02 2.31 16 28 N -0.33 -9.67 12.42 -57.02 -0.71 -10.38 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.12 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.19 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.12 1.68 7.70 -2.39 -0.02 1.66 16 36 H 0.13 1.54 7.94 -2.39 -0.02 1.52 16 37 H 0.12 0.93 5.94 -2.39 -0.01 0.91 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 1.05 7.28 -2.39 -0.02 1.03 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.48 8.11 -2.39 -0.02 1.46 16 43 H 0.08 2.72 7.98 -2.39 -0.02 2.70 16 44 H 0.07 2.61 8.02 -2.39 -0.02 2.59 16 45 H 0.07 4.15 5.88 -2.39 -0.01 4.13 16 46 H -0.03 -1.69 7.91 -2.39 -0.02 -1.71 16 47 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 48 H 0.02 1.02 7.61 -2.39 -0.02 1.00 16 49 H 0.00 -0.05 7.55 -2.39 -0.02 -0.07 16 50 H 0.04 1.77 6.58 -2.39 -0.02 1.75 16 51 H 0.08 2.33 8.10 -2.38 -0.02 2.31 16 52 H 0.20 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -89.88 404.84 4.39 -85.49 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.89 Total: 15.93 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.76 Total: 10.54 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -6.25 Total: -136.14 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -89.88 4.39 -85.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054226373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.136 kcal (2) G-P(sol) polarization free energy of solvation -89.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds