Wall clock time and date at job start Wed Apr 1 2020 04:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47015 * 2 1 4 4 N 1.28478 * 124.88112 * 270.32795 * 3 2 1 5 5 C 1.31809 * 110.07040 * 180.13029 * 4 3 2 6 6 C 1.47711 * 126.51684 * 179.85561 * 5 4 3 7 7 O 1.21569 * 119.99751 * 179.68767 * 6 5 4 8 8 N 1.34776 * 119.99637 * 359.68891 * 6 5 4 9 9 C 1.46504 * 119.99628 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.49815 * 34.99773 * 9 8 6 11 11 C 1.53041 * 109.49651 * 155.06236 * 9 8 6 12 12 C 1.53042 * 109.53653 * 181.34567 * 11 9 8 13 13 C 1.53181 * 109.31526 * 298.63904 * 12 11 9 14 14 H 1.09006 * 109.58611 * 294.70473 * 13 12 11 15 15 C 1.53007 * 109.58898 * 174.42331 * 13 12 11 16 16 N 1.46924 * 108.77915 * 54.63026 * 13 12 11 17 17 C 1.36940 * 120.62821 * 126.41262 * 16 13 12 18 18 H 1.07998 * 120.00273 * 330.85019 * 17 16 13 19 19 C 1.38820 * 119.99974 * 150.85369 * 17 16 13 20 20 N 1.31617 * 119.99503 * 343.81210 * 19 17 16 21 21 Si 1.86792 * 120.00123 * 163.81420 * 19 17 16 22 22 H 1.48497 * 109.47133 * 94.30767 * 21 19 17 23 23 H 1.48497 * 109.47171 * 214.30730 * 21 19 17 24 24 H 1.48500 * 109.47181 * 334.30917 * 21 19 17 25 25 C 1.46920 * 118.73961 * 306.39536 * 16 13 12 26 26 C 1.41500 * 106.96422 * 359.59172 * 5 4 3 27 27 C 1.35027 * 124.88596 * 89.99430 * 3 2 1 28 28 C 1.50698 * 126.38798 * 0.02562 * 27 3 2 29 29 C 1.53003 * 117.49767 * 213.61979 * 28 27 3 30 30 C 1.52998 * 60.00012 * 252.50430 * 29 28 27 31 31 H 1.08997 * 109.47092 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47332 * 299.99981 * 1 2 3 33 33 H 1.08997 * 109.47164 * 60.00841 * 1 2 3 34 34 H 1.09001 * 109.47431 * 239.99472 * 2 1 3 35 35 H 1.09006 * 109.47082 * 119.99374 * 2 1 3 36 36 H 0.96994 * 120.00017 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.46194 * 301.37059 * 11 9 8 38 38 H 1.09003 * 109.45891 * 61.33220 * 11 9 8 39 39 H 1.09007 * 109.49368 * 58.59231 * 12 11 9 40 40 H 1.09003 * 109.49737 * 178.68136 * 12 11 9 41 41 H 1.08997 * 109.46885 * 59.99531 * 15 13 12 42 42 H 1.08998 * 109.47149 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.46744 * 299.99817 * 15 13 12 44 44 H 0.97005 * 119.99443 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.58844 * 293.81817 * 25 16 13 46 46 H 1.09006 * 109.58823 * 173.39381 * 25 16 13 47 47 H 1.07996 * 127.24837 * 180.22058 * 26 5 4 48 48 H 1.08994 * 115.54906 * 359.32436 * 28 27 3 49 49 H 1.09002 * 117.50097 * 359.97438 * 29 28 27 50 50 H 1.08999 * 117.49784 * 145.01666 * 29 28 27 51 51 H 1.08998 * 117.50586 * 252.51249 * 30 29 28 52 52 H 1.09005 * 117.49827 * 107.48653 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2575 2.0760 -1.0539 5 6 2.6867 3.2758 -0.7170 6 6 3.0699 4.3635 -1.6400 7 8 3.4465 5.4315 -1.1978 8 7 3.0018 4.1719 -2.9724 9 6 3.3824 5.2506 -3.8878 10 1 4.2078 5.8181 -3.4582 11 6 3.8162 4.6534 -5.2285 12 6 4.2458 5.7773 -6.1743 13 6 3.0580 6.7120 -6.4230 14 1 2.2754 6.1739 -6.9580 15 6 3.5151 7.9125 -7.2542 16 7 2.5427 7.1770 -5.1280 17 6 2.3988 8.5149 -4.8742 18 1 3.0488 9.2293 -5.3574 19 6 1.4172 8.9531 -3.9958 20 7 0.4325 8.1489 -3.6551 21 14 1.4938 10.6838 -3.2974 22 1 0.6708 11.5926 -4.1352 23 1 0.9692 10.6807 -1.9082 24 1 2.9023 11.1542 -3.2936 25 6 2.1846 6.1793 -4.1108 26 6 2.7048 3.3258 0.6970 27 6 2.2756 2.1094 1.1076 28 6 2.1147 1.6531 2.5348 29 6 1.6872 2.6987 3.5668 30 6 3.1239 2.1727 3.5607 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.7017 3.3197 -3.3251 37 1 4.6528 3.9730 -5.0693 38 1 2.9825 4.1067 -5.6693 39 1 5.0632 6.3399 -5.7231 40 1 4.5768 5.3497 -7.1207 41 1 3.9085 7.5644 -8.2093 42 1 2.6687 8.5764 -7.4297 43 1 4.2940 8.4520 -6.7153 44 1 -0.2531 8.4549 -3.0410 45 1 1.3299 5.5970 -4.4549 46 1 1.9341 6.6830 -3.1771 47 1 2.9994 4.1589 1.3179 48 1 1.7435 0.6366 2.6643 49 1 1.5227 3.7167 3.2135 50 1 1.0344 2.3700 4.3754 51 1 3.4164 1.4980 4.3653 52 1 3.9044 2.8445 3.2033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071561468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:21 Heat of formation + Delta-G solvation = 84.309426 kcal Electronic energy + Delta-G solvation = -31119.829100 eV Core-core repulsion = 27122.356913 eV Total energy + Delta-G solvation = -3997.472187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.72449 -39.14759 -37.52912 -37.38208 -34.76473 -34.26686 -32.72132 -30.95060 -30.33854 -29.91106 -29.58790 -26.13902 -25.10136 -24.42093 -23.70185 -22.66988 -22.37015 -22.05144 -20.57887 -20.20225 -19.42742 -18.95795 -17.65759 -16.53297 -16.32862 -15.92469 -15.48548 -15.32648 -14.92793 -14.74361 -14.44659 -14.09851 -13.84041 -13.69875 -13.53854 -13.34044 -13.27634 -12.88161 -12.59225 -12.48242 -12.30287 -12.04272 -11.85047 -11.75185 -11.70691 -11.38302 -11.25718 -11.07352 -11.03984 -10.82163 -10.62357 -10.60237 -10.42263 -10.31735 -10.17549 -9.89612 -9.74247 -9.38087 -9.35407 -9.04278 -8.77536 -8.38172 -8.32285 -6.52082 -5.65263 -3.09074 1.68900 2.11110 2.34110 3.47369 3.55740 3.57969 3.62411 3.64068 3.88034 4.09791 4.22618 4.53622 4.55847 4.61499 4.67200 4.69433 4.78645 4.84653 5.14713 5.30898 5.34007 5.34965 5.44366 5.46558 5.49164 5.59976 5.64569 5.67650 5.71742 5.74348 5.80713 5.83709 5.98456 6.06061 6.20947 6.35490 6.38009 6.46323 6.47510 6.53722 6.60413 6.71274 6.73751 6.84879 7.07397 7.12362 7.20788 7.42846 7.84551 7.86719 7.95154 8.17218 8.58894 8.77187 9.33381 9.98192 10.53727 11.42859 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.002894 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.161334 B = 9672.836151 C =10954.915880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.280 5.280 4 N -0.262 5.262 5 C -0.001 4.001 6 C 0.598 3.402 7 O -0.526 6.526 8 N -0.707 5.707 9 C 0.117 3.883 10 H 0.083 0.917 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.024 0.976 15 C -0.136 4.136 16 N -0.583 5.583 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.899 3.101 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.169 3.831 26 C -0.177 4.177 27 C 0.042 3.958 28 C -0.096 4.096 29 C -0.162 4.162 30 C -0.163 4.163 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.398 0.602 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.252 0.748 45 H 0.017 0.983 46 H 0.094 0.906 47 H 0.158 0.842 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.101 0.899 51 H 0.100 0.900 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -20.287 9.811 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 N -0.068 5.068 4 N -0.097 5.097 5 C -0.162 4.162 6 C 0.381 3.619 7 O -0.399 6.399 8 N -0.357 5.357 9 C 0.012 3.988 10 H 0.101 0.899 11 C -0.154 4.154 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.307 5.307 17 C -0.382 4.382 18 H 0.088 0.912 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.042 3.958 26 C -0.205 4.205 27 C -0.082 4.082 28 C -0.116 4.116 29 C -0.199 4.199 30 C -0.201 4.201 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.231 0.769 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.035 0.965 46 H 0.112 0.888 47 H 0.176 0.824 48 H 0.131 0.869 49 H 0.122 0.878 50 H 0.119 0.881 51 H 0.119 0.881 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.961 -20.229 9.255 22.442 hybrid contribution -0.187 0.728 0.936 1.200 sum 2.773 -19.501 10.191 22.177 Atomic orbital electron populations 1.22187 0.93511 1.03383 1.03893 1.21930 0.95977 0.77492 1.05020 1.45386 1.46801 1.12174 1.02442 1.73528 1.17699 1.05010 1.13428 1.22060 1.07099 0.92902 0.94128 1.16841 0.78044 0.85247 0.81722 1.90827 1.46961 1.25217 1.76935 1.45914 1.67092 1.17385 1.05286 1.22008 1.01250 0.87940 0.87611 0.89918 1.21675 1.00113 0.97995 0.95626 1.22045 1.00011 0.96844 0.97639 1.20485 0.92590 0.93168 0.87946 0.95811 1.21801 1.01438 0.98726 0.97396 1.44025 1.75525 1.02637 1.08473 1.19130 1.11251 0.82830 1.24996 0.91245 1.25065 0.95041 0.97491 1.01680 1.70019 1.11852 1.35872 1.36580 0.86334 0.77685 0.84569 0.78514 1.21633 1.21595 1.20356 1.21070 0.90364 0.89042 0.95328 1.21404 1.07765 0.97607 0.93747 1.20355 1.06253 0.92570 0.89005 1.20242 1.06927 0.99164 0.85250 1.23108 0.97805 0.99086 0.99948 1.23099 0.93311 1.03578 1.00088 0.90181 0.91663 0.91103 0.88021 0.88455 0.76869 0.93072 0.92281 0.92051 0.92728 0.94395 0.92048 0.92768 0.93801 0.96509 0.88808 0.82400 0.86860 0.87794 0.88079 0.88130 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.12 0.83 6.74 -4.04 -0.03 0.81 16 3 N -0.28 -3.32 3.30 -57.11 -0.19 -3.51 16 4 N -0.26 -3.93 11.67 33.42 0.39 -3.54 16 5 C 0.00 -0.02 7.13 -82.77 -0.59 -0.61 16 6 C 0.60 12.17 7.79 -12.39 -0.10 12.07 16 7 O -0.53 -12.70 16.59 5.30 0.09 -12.61 16 8 N -0.71 -13.30 5.08 -54.67 -0.28 -13.57 16 9 C 0.12 2.44 2.60 -67.81 -0.18 2.27 16 10 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 11 C -0.12 -2.01 5.35 -26.69 -0.14 -2.15 16 12 C -0.13 -2.24 5.37 -26.62 -0.14 -2.38 16 13 C 0.16 3.50 3.50 -67.60 -0.24 3.26 16 14 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 15 C -0.14 -2.63 7.95 37.16 0.30 -2.34 16 16 N -0.58 -15.03 2.99 -164.78 -0.49 -15.53 16 17 C -0.25 -7.10 8.60 -15.05 -0.13 -7.23 16 18 H 0.07 1.90 6.21 -52.49 -0.33 1.57 16 19 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 20 N -0.90 -27.45 11.22 55.49 0.62 -26.83 16 21 Si 0.90 22.93 29.58 -169.99 -5.03 17.90 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 25 C 0.17 4.30 4.87 -3.71 -0.02 4.28 16 26 C -0.18 -2.68 9.86 -39.36 -0.39 -3.06 16 27 C 0.04 0.50 6.60 -82.21 -0.54 -0.04 16 28 C -0.10 -0.79 5.93 -91.77 -0.54 -1.34 16 29 C -0.16 -1.24 10.05 -26.73 -0.27 -1.51 16 30 C -0.16 -1.19 10.05 -26.73 -0.27 -1.46 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.45 7.13 -51.93 -0.37 0.08 16 36 H 0.40 6.49 8.33 -40.82 -0.34 6.15 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 43 H 0.05 1.07 7.40 -51.93 -0.38 0.68 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 2.80 6.11 -51.93 -0.32 2.48 16 47 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 48 H 0.11 0.68 7.18 -51.93 -0.37 0.30 16 49 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 50 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.10 0.86 7.97 -51.93 -0.41 0.44 16 LS Contribution 415.02 15.07 6.25 6.25 Total: -1.00 -34.99 415.02 -10.40 -45.38 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.78 Total: 6.14 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.98 Total: -0.10 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.05 Total: -62.97 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.99 -10.40 -45.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071561468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.692 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds