Wall clock time and date at job start Wed Apr 1 2020 04:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47015 * 2 1 4 4 N 1.28478 * 124.88112 * 270.32795 * 3 2 1 5 5 C 1.31809 * 110.07040 * 180.13029 * 4 3 2 6 6 C 1.47711 * 126.51684 * 179.85561 * 5 4 3 7 7 O 1.21569 * 119.99751 * 179.68767 * 6 5 4 8 8 N 1.34776 * 119.99637 * 359.68891 * 6 5 4 9 9 C 1.46504 * 119.99628 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.49815 * 34.99773 * 9 8 6 11 11 C 1.53041 * 109.49651 * 155.06236 * 9 8 6 12 12 C 1.53042 * 109.53653 * 181.34567 * 11 9 8 13 13 C 1.53181 * 109.31526 * 298.63904 * 12 11 9 14 14 H 1.09006 * 109.58611 * 294.70473 * 13 12 11 15 15 C 1.53007 * 109.58898 * 174.42331 * 13 12 11 16 16 N 1.46924 * 108.77915 * 54.63026 * 13 12 11 17 17 C 1.36940 * 120.62821 * 126.41262 * 16 13 12 18 18 H 1.07998 * 120.00273 * 330.85019 * 17 16 13 19 19 C 1.38820 * 119.99974 * 150.85369 * 17 16 13 20 20 N 1.31617 * 119.99503 * 343.81210 * 19 17 16 21 21 Si 1.86792 * 120.00123 * 163.81420 * 19 17 16 22 22 H 1.48497 * 109.47133 * 94.30767 * 21 19 17 23 23 H 1.48497 * 109.47171 * 214.30730 * 21 19 17 24 24 H 1.48500 * 109.47181 * 334.30917 * 21 19 17 25 25 C 1.46920 * 118.73961 * 306.39536 * 16 13 12 26 26 C 1.41500 * 106.96422 * 359.59172 * 5 4 3 27 27 C 1.35027 * 124.88596 * 89.99430 * 3 2 1 28 28 C 1.50698 * 126.38798 * 0.02562 * 27 3 2 29 29 C 1.53003 * 117.49767 * 213.61979 * 28 27 3 30 30 C 1.52998 * 60.00012 * 252.50430 * 29 28 27 31 31 H 1.08997 * 109.47092 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47332 * 299.99981 * 1 2 3 33 33 H 1.08997 * 109.47164 * 60.00841 * 1 2 3 34 34 H 1.09001 * 109.47431 * 239.99472 * 2 1 3 35 35 H 1.09006 * 109.47082 * 119.99374 * 2 1 3 36 36 H 0.96994 * 120.00017 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.46194 * 301.37059 * 11 9 8 38 38 H 1.09003 * 109.45891 * 61.33220 * 11 9 8 39 39 H 1.09007 * 109.49368 * 58.59231 * 12 11 9 40 40 H 1.09003 * 109.49737 * 178.68136 * 12 11 9 41 41 H 1.08997 * 109.46885 * 59.99531 * 15 13 12 42 42 H 1.08998 * 109.47149 * 180.02562 * 15 13 12 43 43 H 1.08997 * 109.46744 * 299.99817 * 15 13 12 44 44 H 0.97005 * 119.99443 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.58844 * 293.81817 * 25 16 13 46 46 H 1.09006 * 109.58823 * 173.39381 * 25 16 13 47 47 H 1.07996 * 127.24837 * 180.22058 * 26 5 4 48 48 H 1.08994 * 115.54906 * 359.32436 * 28 27 3 49 49 H 1.09002 * 117.50097 * 359.97438 * 29 28 27 50 50 H 1.08999 * 117.49784 * 145.01666 * 29 28 27 51 51 H 1.08998 * 117.50586 * 252.51249 * 30 29 28 52 52 H 1.09005 * 117.49827 * 107.48653 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2575 2.0760 -1.0539 5 6 2.6867 3.2758 -0.7170 6 6 3.0699 4.3635 -1.6400 7 8 3.4465 5.4315 -1.1978 8 7 3.0018 4.1719 -2.9724 9 6 3.3824 5.2506 -3.8878 10 1 4.2078 5.8181 -3.4582 11 6 3.8162 4.6534 -5.2285 12 6 4.2458 5.7773 -6.1743 13 6 3.0580 6.7120 -6.4230 14 1 2.2754 6.1739 -6.9580 15 6 3.5151 7.9125 -7.2542 16 7 2.5427 7.1770 -5.1280 17 6 2.3988 8.5149 -4.8742 18 1 3.0488 9.2293 -5.3574 19 6 1.4172 8.9531 -3.9958 20 7 0.4325 8.1489 -3.6551 21 14 1.4938 10.6838 -3.2974 22 1 0.6708 11.5926 -4.1352 23 1 0.9692 10.6807 -1.9082 24 1 2.9023 11.1542 -3.2936 25 6 2.1846 6.1793 -4.1108 26 6 2.7048 3.3258 0.6970 27 6 2.2756 2.1094 1.1076 28 6 2.1147 1.6531 2.5348 29 6 1.6872 2.6987 3.5668 30 6 3.1239 2.1727 3.5607 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.7017 3.3197 -3.3251 37 1 4.6528 3.9730 -5.0693 38 1 2.9825 4.1067 -5.6693 39 1 5.0632 6.3399 -5.7231 40 1 4.5768 5.3497 -7.1207 41 1 3.9085 7.5644 -8.2093 42 1 2.6687 8.5764 -7.4297 43 1 4.2940 8.4520 -6.7153 44 1 -0.2531 8.4549 -3.0410 45 1 1.3299 5.5970 -4.4549 46 1 1.9341 6.6830 -3.1771 47 1 2.9994 4.1589 1.3179 48 1 1.7435 0.6366 2.6643 49 1 1.5227 3.7167 3.2135 50 1 1.0344 2.3700 4.3754 51 1 3.4164 1.4980 4.3653 52 1 3.9044 2.8445 3.2033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071561468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:20 Heat of formation + Delta-G solvation = 61.422956 kcal Electronic energy + Delta-G solvation = -31120.821532 eV Core-core repulsion = 27122.356913 eV Total energy + Delta-G solvation = -3998.464619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.79547 -40.81175 -39.18677 -38.14104 -36.03771 -35.58971 -34.66406 -32.45205 -31.77875 -31.38597 -30.77116 -27.83956 -26.95129 -25.50340 -24.69939 -23.99590 -23.26297 -23.19139 -22.11591 -21.57515 -21.04066 -20.28422 -18.66834 -18.33813 -17.69608 -17.30994 -17.05309 -16.63649 -16.06884 -15.88490 -15.66963 -15.46858 -15.42571 -15.23257 -14.99109 -14.85520 -14.49856 -14.41189 -14.14346 -13.55960 -13.47858 -13.11262 -13.06824 -12.79535 -12.77764 -12.69769 -12.54815 -12.41777 -12.31984 -12.29898 -12.13899 -12.03609 -12.01634 -11.95652 -11.69334 -11.48943 -11.35045 -11.17834 -11.08133 -10.54026 -10.27752 -10.00013 -9.76386 -8.63726 -7.85632 -5.31509 0.47720 0.96208 1.39656 1.44602 1.46016 1.52568 2.13255 2.36063 2.50843 3.01942 3.20329 3.31598 3.43735 3.65484 3.81438 3.92880 3.97089 3.99465 4.00506 4.07599 4.08678 4.23505 4.32554 4.32865 4.37894 4.47334 4.59058 4.69121 4.70303 4.76957 4.80079 4.80912 4.82227 4.88216 5.00283 5.01446 5.05454 5.15730 5.17224 5.21470 5.24862 5.26423 5.28737 5.31275 5.43771 5.55007 5.60444 5.70179 5.76942 5.82973 6.39379 6.49094 6.88275 7.13832 7.21817 7.89138 8.39294 9.19996 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.002894 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.161334 B = 9672.836151 C =10954.915880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.267 5.267 4 N -0.265 5.265 5 C -0.037 4.037 6 C 0.594 3.406 7 O -0.577 6.577 8 N -0.696 5.696 9 C 0.131 3.869 10 H 0.055 0.945 11 C -0.107 4.107 12 C -0.116 4.116 13 C 0.152 3.848 14 H 0.021 0.979 15 C -0.128 4.128 16 N -0.602 5.602 17 C -0.251 4.251 18 H 0.077 0.923 19 C -0.055 4.055 20 N -0.935 5.935 21 Si 0.958 3.042 22 H -0.278 1.278 23 H -0.301 1.301 24 H -0.269 1.269 25 C 0.183 3.817 26 C -0.207 4.207 27 C 0.061 3.939 28 C -0.101 4.101 29 C -0.164 4.164 30 C -0.155 4.155 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.412 0.588 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.244 0.756 45 H -0.006 1.006 46 H 0.041 0.959 47 H 0.148 0.852 48 H 0.150 0.850 49 H 0.079 0.921 50 H 0.127 0.873 51 H 0.130 0.870 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.119 -23.723 9.874 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 N -0.056 5.056 4 N -0.101 5.101 5 C -0.195 4.195 6 C 0.379 3.621 7 O -0.455 6.455 8 N -0.346 5.346 9 C 0.025 3.975 10 H 0.073 0.927 11 C -0.145 4.145 12 C -0.156 4.156 13 C 0.047 3.953 14 H 0.039 0.961 15 C -0.186 4.186 16 N -0.326 5.326 17 C -0.381 4.381 18 H 0.095 0.905 19 C -0.250 4.250 20 N -0.582 5.582 21 Si 0.786 3.214 22 H -0.205 1.205 23 H -0.228 1.228 24 H -0.193 1.193 25 C 0.055 3.945 26 C -0.235 4.235 27 C -0.064 4.064 28 C -0.120 4.120 29 C -0.202 4.202 30 C -0.193 4.193 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.248 0.752 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.012 0.988 46 H 0.059 0.941 47 H 0.166 0.834 48 H 0.168 0.832 49 H 0.098 0.902 50 H 0.145 0.855 51 H 0.148 0.852 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.990 -23.707 9.261 25.762 hybrid contribution -0.541 1.670 0.922 1.983 sum 3.449 -22.036 10.183 24.519 Atomic orbital electron populations 1.22178 0.92871 1.05052 1.02424 1.22510 0.96455 0.74953 1.07582 1.45946 1.44708 1.13348 1.01617 1.73436 1.17593 1.04288 1.14812 1.21646 1.10172 0.93337 0.94363 1.17344 0.76951 0.85429 0.82353 1.90779 1.49366 1.27535 1.77833 1.45767 1.66653 1.17390 1.04827 1.21614 0.97946 0.87965 0.89995 0.92672 1.21651 1.01712 0.98323 0.92822 1.21953 0.97852 0.96064 0.99698 1.20825 0.93758 0.94796 0.85927 0.96114 1.21729 1.00340 0.97527 0.98988 1.44319 1.75697 1.02026 1.10581 1.19505 1.10309 0.84305 1.24004 0.90515 1.25833 0.95242 1.01077 1.02865 1.70190 1.12791 1.37595 1.37608 0.85396 0.78044 0.80825 0.77127 1.20482 1.22811 1.19321 1.20708 0.91648 0.89131 0.92983 1.21481 1.09817 0.99227 0.92993 1.20798 1.03549 0.91205 0.90862 1.20509 1.07991 1.00863 0.82645 1.23160 0.98829 0.97879 1.00317 1.23171 0.92560 1.03430 1.00141 0.86914 0.91918 0.93779 0.86845 0.84621 0.75200 0.89740 0.91053 0.92702 0.88356 0.90142 0.94284 0.93452 0.94744 0.98750 0.94086 0.83431 0.83240 0.90193 0.85494 0.85216 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.24 71.98 0.74 -1.00 16 2 C 0.10 1.13 6.74 86.38 0.58 1.71 16 3 N -0.27 -5.96 3.30 -334.58 -1.10 -7.06 16 4 N -0.26 -7.98 11.67 -48.18 -0.56 -8.54 16 5 C -0.04 -1.35 7.13 42.46 0.30 -1.04 16 6 C 0.59 25.98 7.79 86.75 0.68 26.66 16 7 O -0.58 -30.49 16.59 -3.93 -0.07 -30.55 16 8 N -0.70 -27.40 5.08 -445.16 -2.26 -29.66 16 9 C 0.13 5.65 2.60 45.07 0.12 5.77 16 10 H 0.06 2.70 7.58 -2.39 -0.02 2.69 16 11 C -0.11 -3.52 5.35 30.62 0.16 -3.36 16 12 C -0.12 -3.85 5.37 30.67 0.16 -3.68 16 13 C 0.15 6.34 3.50 44.97 0.16 6.50 16 14 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 15 C -0.13 -4.78 7.95 71.98 0.57 -4.21 16 16 N -0.60 -32.04 2.99 -675.23 -2.02 -34.06 16 17 C -0.25 -14.59 8.60 84.03 0.72 -13.87 16 18 H 0.08 4.26 6.21 -2.91 -0.02 4.25 16 19 C -0.06 -3.36 4.93 84.86 0.42 -2.94 16 20 N -0.94 -60.62 11.22 21.65 0.24 -60.38 16 21 Si 0.96 49.15 29.58 68.60 2.03 51.18 16 22 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 24 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 25 C 0.18 9.84 4.87 86.36 0.42 10.26 16 26 C -0.21 -6.62 9.86 22.41 0.22 -6.40 16 27 C 0.06 1.41 6.60 41.40 0.27 1.68 16 28 C -0.10 -1.39 5.93 -11.54 -0.07 -1.46 16 29 C -0.16 -2.26 10.05 30.59 0.31 -1.95 16 30 C -0.16 -1.94 10.05 30.59 0.31 -1.64 16 31 H 0.11 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.14 0.53 7.13 -2.38 -0.02 0.51 16 36 H 0.41 13.68 8.33 -92.71 -0.77 12.91 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.04 1.59 7.66 -2.39 -0.02 1.58 16 43 H 0.05 1.80 7.40 -2.39 -0.02 1.79 16 44 H 0.24 15.48 8.31 -92.70 -0.77 14.71 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.04 2.64 6.11 -2.38 -0.01 2.63 16 47 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 48 H 0.15 1.01 7.18 -2.39 -0.02 0.99 16 49 H 0.08 1.50 7.94 -2.39 -0.02 1.48 16 50 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.08 1.39 7.97 -2.38 -0.02 1.37 16 Total: -1.00 -84.96 415.02 2.48 -82.48 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.14 Total: 25.57 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.07 Total: 11.03 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -5.70 Total: -139.71 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.07 Total: -30.55 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.18 kcal Total: -84.96 2.48 -82.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071561468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.903 kcal (2) G-P(sol) polarization free energy of solvation -84.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds