Wall clock time and date at job start Wed Apr 1 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47188 * 2 1 4 4 N 1.28444 * 125.19542 * 264.83962 * 3 2 1 5 5 C 1.30860 * 110.92494 * 180.27806 * 4 3 2 6 6 C 1.39668 * 107.86690 * 359.71294 * 5 4 3 7 7 C 1.36600 * 125.18402 * 84.62509 * 3 2 1 8 8 C 1.47164 * 126.88529 * 359.97438 * 7 3 2 9 9 O 1.21621 * 120.00252 * 4.98388 * 8 7 3 10 10 N 1.34778 * 119.99899 * 184.98236 * 8 7 3 11 11 C 1.46501 * 120.00075 * 184.84910 * 10 8 7 12 12 H 1.08999 * 113.34276 * 28.42478 * 11 10 8 13 13 C 1.50003 * 114.12559 * 255.49665 * 11 10 8 14 14 H 1.08998 * 112.50576 * 170.15155 * 13 11 10 15 15 C 1.51205 * 126.16324 * 27.75585 * 13 11 10 16 16 C 1.55147 * 105.66990 * 198.22318 * 15 13 11 17 17 C 1.52500 * 112.59687 * 55.75400 * 16 15 13 18 18 N 1.48410 * 111.86070 * 313.00171 * 17 16 15 19 19 C 1.36937 * 123.17118 * 231.81535 * 18 17 16 20 20 H 1.08001 * 120.00191 * 213.95042 * 19 18 17 21 21 C 1.38815 * 119.99779 * 33.95029 * 19 18 17 22 22 N 1.31627 * 119.99632 * 12.35970 * 21 19 18 23 23 Si 1.86799 * 119.99935 * 192.35767 * 21 19 18 24 24 H 1.48491 * 109.47120 * 60.00139 * 23 21 19 25 25 H 1.48502 * 109.46907 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47024 * 299.99984 * 23 21 19 27 27 C 1.45377 * 113.65904 * 51.84643 * 18 17 16 28 28 H 1.08998 * 112.09394 * 59.74668 * 27 18 17 29 29 C 1.49967 * 126.22317 * 204.16251 * 27 18 17 30 30 C 1.52997 * 114.08639 * 253.24440 * 29 27 18 31 31 C 1.53001 * 114.08502 * 25.66365 * 29 27 18 32 32 H 1.08998 * 109.47533 * 299.99489 * 1 2 3 33 33 H 1.09002 * 109.47534 * 59.99462 * 1 2 3 34 34 H 1.09002 * 109.47319 * 179.97438 * 1 2 3 35 35 H 1.09006 * 109.46932 * 240.00356 * 2 1 3 36 36 H 1.08993 * 109.47480 * 120.00739 * 2 1 3 37 37 H 1.08003 * 126.06676 * 179.74816 * 5 4 3 38 38 H 1.08000 * 127.32496 * 179.97438 * 6 5 4 39 39 H 0.96999 * 119.99905 * 4.85377 * 10 8 7 40 40 H 1.09003 * 110.10028 * 317.75952 * 15 13 11 41 41 H 1.09000 * 110.10274 * 79.41705 * 15 13 11 42 42 H 1.08999 * 109.04573 * 294.84073 * 16 15 13 43 43 H 1.09004 * 108.63735 * 176.38420 * 16 15 13 44 44 H 1.09002 * 109.00181 * 192.39704 * 17 16 15 45 45 H 1.08994 * 108.94152 * 73.57403 * 17 16 15 46 46 H 0.96997 * 119.99004 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.47453 * 59.99728 * 30 29 27 48 48 H 1.09001 * 109.47283 * 180.02562 * 30 29 27 49 49 H 1.09003 * 109.47005 * 299.99998 * 30 29 27 50 50 H 1.09008 * 109.47075 * 54.61519 * 31 29 27 51 51 H 1.09002 * 109.47280 * 174.61832 * 31 29 27 52 52 H 1.09000 * 109.46954 * 294.61644 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3541 2.0477 -1.0454 5 6 2.7551 3.2511 -0.7236 6 6 2.6638 3.3763 0.6645 7 6 2.1821 2.1581 1.1115 8 6 1.9069 1.7749 2.5055 9 8 1.5745 0.6349 2.7685 10 7 2.0232 2.6872 3.4907 11 6 1.8535 2.2818 4.8882 12 1 2.1233 1.2419 5.0721 13 6 0.5417 2.6905 5.4902 14 1 0.3695 2.2337 6.4647 15 6 -0.7555 2.9023 4.7429 16 6 -1.6517 3.7439 5.6892 17 6 -0.9852 5.0448 6.1242 18 7 0.4138 4.8271 6.5690 19 6 0.8970 5.2763 7.7689 20 1 1.9240 5.6006 7.8503 21 6 0.0669 5.3147 8.8808 22 7 -1.0977 4.7018 8.8542 23 14 0.6024 6.2364 10.4148 24 1 0.8222 7.6666 10.0816 25 1 -0.4540 6.1261 11.4527 26 1 1.8651 5.6484 10.9300 27 6 1.2231 4.0926 5.6103 28 1 1.2881 4.6053 4.6507 29 6 2.4492 3.2861 5.9193 30 6 3.7569 3.9407 5.4697 31 6 2.5008 2.7526 7.3524 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8898 37 1 3.0955 4.0125 -1.4097 38 1 2.9159 4.2398 1.2621 39 1 2.2193 3.6122 3.2744 40 1 -0.5686 3.4385 3.8124 41 1 -1.2291 1.9428 4.5350 42 1 -1.8850 3.1543 6.5758 43 1 -2.5805 3.9807 5.1702 44 1 -1.5554 5.4782 6.9459 45 1 -0.9868 5.7408 5.2854 46 1 -1.6775 4.7284 9.6313 47 1 3.8718 4.9030 5.9684 48 1 4.5950 3.2941 5.7294 49 1 3.7355 4.0912 4.3903 50 1 1.5927 2.1873 7.5626 51 1 3.3682 2.1026 7.4671 52 1 2.5781 3.5878 8.0485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087283009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:35 Heat of formation + Delta-G solvation = 113.559212 kcal Electronic energy + Delta-G solvation = -32769.950799 eV Core-core repulsion = 28773.746978 eV Total energy + Delta-G solvation = -3996.203821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.64733 -41.10664 -38.62856 -35.31784 -34.69939 -33.30903 -32.80900 -30.95986 -30.14985 -29.88079 -29.22973 -26.95056 -25.85144 -24.95392 -24.14876 -22.98200 -22.35674 -21.64543 -20.48039 -19.96548 -19.07852 -18.39280 -17.68628 -16.69746 -16.33069 -15.94026 -15.38209 -14.86213 -14.79351 -14.54068 -14.37813 -14.04608 -13.91936 -13.74357 -13.70735 -13.30762 -13.05162 -12.76738 -12.66842 -12.55066 -12.42633 -12.23860 -11.96973 -11.53520 -11.46408 -11.28843 -11.15432 -10.97150 -10.93798 -10.90735 -10.67571 -10.45048 -10.27983 -10.19227 -9.97574 -9.84859 -9.51691 -9.33948 -9.28645 -9.16886 -8.87234 -8.65723 -8.41703 -6.48660 -5.78230 -3.26080 1.19359 2.25320 2.50144 3.20406 3.21829 3.35369 3.41858 3.43041 4.36339 4.46107 4.54955 4.74436 4.79506 4.86963 5.00907 5.03259 5.08607 5.23360 5.30954 5.41687 5.43476 5.45880 5.58306 5.60202 5.66907 5.88031 5.89691 5.90913 5.93657 5.99823 6.11007 6.11438 6.34048 6.35485 6.36223 6.40289 6.49994 6.54606 6.60857 6.62826 6.67506 6.75208 6.82458 6.96793 7.06634 7.10137 7.28665 7.48024 7.52607 7.68271 7.77128 7.93774 8.18900 8.47464 9.15689 9.80409 10.49947 11.28827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.003125 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.716462 B = 8957.276000 C = 9359.310006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.255 5.255 4 N -0.281 5.281 5 C -0.005 4.005 6 C -0.192 4.192 7 C -0.031 4.031 8 C 0.591 3.409 9 O -0.540 6.540 10 N -0.684 5.684 11 C 0.138 3.862 12 H 0.094 0.906 13 C -0.165 4.165 14 H 0.107 0.893 15 C -0.085 4.085 16 C -0.121 4.121 17 C 0.160 3.840 18 N -0.569 5.569 19 C -0.239 4.239 20 H 0.063 0.937 21 C 0.008 3.992 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.145 3.855 28 H 0.045 0.955 29 C -0.062 4.062 30 C -0.135 4.135 31 C -0.116 4.116 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.185 0.815 38 H 0.160 0.840 39 H 0.402 0.598 40 H 0.044 0.956 41 H 0.039 0.961 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.093 0.907 45 H -0.007 1.007 46 H 0.253 0.747 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.046 0.954 50 H 0.064 0.936 51 H 0.036 0.964 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -5.290 -14.989 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.043 5.043 4 N -0.114 5.114 5 C -0.181 4.181 6 C -0.221 4.221 7 C -0.160 4.160 8 C 0.376 3.624 9 O -0.417 6.417 10 N -0.335 5.335 11 C 0.033 3.967 12 H 0.112 0.888 13 C -0.186 4.186 14 H 0.125 0.875 15 C -0.122 4.122 16 C -0.160 4.160 17 C 0.035 3.965 18 N -0.291 5.291 19 C -0.368 4.368 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.540 5.540 23 Si 0.726 3.274 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.209 1.209 27 C 0.037 3.963 28 H 0.062 0.938 29 C -0.063 4.063 30 C -0.192 4.192 31 C -0.173 4.173 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.202 0.798 38 H 0.177 0.823 39 H 0.239 0.761 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.111 0.889 45 H 0.011 0.989 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.055 0.945 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.682 -6.944 -15.501 17.910 hybrid contribution 0.301 1.547 1.322 2.057 sum 5.983 -5.397 -14.179 16.308 Atomic orbital electron populations 1.22085 0.93388 1.03562 1.03166 1.22153 0.96250 0.76568 1.05587 1.45850 1.44149 1.12287 1.02011 1.73187 1.17079 1.07235 1.13897 1.23540 1.04898 0.94599 0.95031 1.22279 1.06683 0.97335 0.95781 1.21495 1.10869 0.93546 0.90113 1.16842 0.77538 0.85216 0.82839 1.90773 1.47626 1.19655 1.83681 1.45392 1.70828 1.11552 1.05683 1.21647 0.98066 0.98420 0.78615 0.88768 1.23321 0.93093 1.01818 1.00398 0.87523 1.21221 0.95651 0.98175 0.97192 1.21993 0.96487 0.99190 0.98355 1.20831 0.86040 0.92673 0.96935 1.43747 1.06087 1.63386 1.15890 1.18848 0.96810 1.35925 0.85248 0.91989 1.25103 0.97723 0.99245 0.97071 1.69906 1.10907 1.43675 1.29466 0.86481 0.77670 0.80035 0.83189 1.21164 1.21759 1.20902 1.21781 0.92016 0.89742 0.92768 0.93776 1.21853 0.93940 0.95058 0.95439 1.21695 0.96635 1.00913 0.99973 1.21598 1.00496 1.01629 0.93569 0.91286 0.92078 0.90084 0.88468 0.86741 0.79774 0.82273 0.76064 0.93759 0.94189 0.91336 0.94394 0.88854 0.98886 0.93703 0.91966 0.93015 0.93481 0.91704 0.94494 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.11 1.20 6.41 -4.04 -0.03 1.17 16 3 N -0.25 -3.21 3.35 -57.14 -0.19 -3.40 16 4 N -0.28 -3.52 11.90 30.59 0.36 -3.16 16 5 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 6 C -0.19 -2.09 10.50 -38.98 -0.41 -2.50 16 7 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16 8 C 0.59 8.55 7.79 -12.64 -0.10 8.45 16 9 O -0.54 -9.00 14.43 5.26 0.08 -8.93 16 10 N -0.68 -9.40 4.23 -58.82 -0.25 -9.65 16 11 C 0.14 2.18 3.86 -71.82 -0.28 1.90 16 12 H 0.09 1.56 7.67 -51.93 -0.40 1.16 16 13 C -0.17 -3.03 2.96 -95.83 -0.28 -3.32 16 14 H 0.11 2.26 5.88 -51.93 -0.31 1.95 16 15 C -0.08 -1.56 6.01 -26.50 -0.16 -1.72 16 16 C -0.12 -2.47 5.93 -25.85 -0.15 -2.63 16 17 C 0.16 3.62 5.71 -3.24 -0.02 3.61 16 18 N -0.57 -12.99 2.88 -169.41 -0.49 -13.48 16 19 C -0.24 -5.95 7.55 -15.06 -0.11 -6.06 16 20 H 0.06 1.54 7.47 -52.49 -0.39 1.15 16 21 C 0.01 0.20 5.14 -17.43 -0.09 0.11 16 22 N -0.90 -24.15 11.22 55.49 0.62 -23.53 16 23 Si 0.90 20.66 29.57 -169.99 -5.03 15.63 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.15 2.73 2.94 -72.13 -0.21 2.52 16 28 H 0.04 0.81 6.60 -51.93 -0.34 0.47 16 29 C -0.06 -1.01 1.38 -159.15 -0.22 -1.23 16 30 C -0.13 -1.87 9.22 37.16 0.34 -1.53 16 31 C -0.12 -2.05 8.41 37.16 0.31 -1.73 16 32 H 0.07 0.84 8.06 -51.93 -0.42 0.43 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.11 1.28 6.53 -51.93 -0.34 0.94 16 37 H 0.19 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.16 1.34 7.62 -52.49 -0.40 0.94 16 39 H 0.40 4.92 5.30 -40.82 -0.22 4.70 16 40 H 0.04 0.79 7.97 -51.93 -0.41 0.37 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.39 5.87 -51.93 -0.30 2.09 16 45 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 46 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.05 0.56 6.32 -51.93 -0.33 0.24 16 50 H 0.06 1.26 5.92 -51.92 -0.31 0.95 16 51 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.08 1.70 6.17 -51.93 -0.32 1.38 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -28.83 397.09 -8.99 -37.82 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.27 Total: 8.17 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.81 Total: -5.45 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.06 Total: -53.22 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.83 -8.99 -37.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.381 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds